data_7GO4 # _model_server_result.job_id bz-8pox-HmdN6soDhxGb0A _model_server_result.datetime_utc '2024-11-22 12:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7go4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GO4 # _exptl.entry_id 7GO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.123 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-imidazo[1,2-a]pyrimidine-5,7-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GO4 _cell.length_a 42.73 _cell.length_b 62.574 _cell.length_c 147.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H5 N3 O2' _chem_comp.formula_weight 151.123 _chem_comp.id K7L _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-imidazo[1,2-a]pyrimidine-5,7-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 K7L sing 173 n n C1 C2 K7L sing 174 n y C2 C3 K7L doub 175 n y C3 O2 K7L sing 176 n n C3 N1 K7L sing 177 n y N1 C4 K7L sing 178 n y C4 C5 K7L doub 179 n y C5 N2 K7L sing 180 n y N2 C6 K7L doub 181 n y C6 N3 K7L sing 182 n y C1 N3 K7L doub 183 n y N1 C6 K7L sing 184 n y C4 H4 K7L sing 185 n n C5 H5 K7L sing 186 n n C2 H2 K7L sing 187 n n O1 H1 K7L sing 188 n n O2 H3 K7L sing 189 n n # _atom_sites.entry_id 7GO4 _atom_sites.fract_transf_matrix[1][1] 0.023403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K7L B 1 201 201 K7L LIG . D 2 K7L B 1 202 301 K7L LIG . E 3 HOH A 1 201 281 HOH HOH . E 3 HOH A 2 202 82 HOH HOH . E 3 HOH A 3 203 74 HOH HOH . E 3 HOH A 4 204 193 HOH HOH . E 3 HOH A 5 205 245 HOH HOH . E 3 HOH A 6 206 215 HOH HOH . E 3 HOH A 7 207 248 HOH HOH . E 3 HOH A 8 208 210 HOH HOH . E 3 HOH A 9 209 135 HOH HOH . E 3 HOH A 10 210 53 HOH HOH . E 3 HOH A 11 211 52 HOH HOH . E 3 HOH A 12 212 32 HOH HOH . E 3 HOH A 13 213 292 HOH HOH . E 3 HOH A 14 214 7 HOH HOH . E 3 HOH A 15 215 29 HOH HOH . E 3 HOH A 16 216 115 HOH HOH . E 3 HOH A 17 217 13 HOH HOH . E 3 HOH A 18 218 15 HOH HOH . E 3 HOH A 19 219 116 HOH HOH . E 3 HOH A 20 220 216 HOH HOH . E 3 HOH A 21 221 10 HOH HOH . E 3 HOH A 22 222 57 HOH HOH . E 3 HOH A 23 223 51 HOH HOH . E 3 HOH A 24 224 28 HOH HOH . E 3 HOH A 25 225 258 HOH HOH . E 3 HOH A 26 226 117 HOH HOH . E 3 HOH A 27 227 100 HOH HOH . E 3 HOH A 28 228 242 HOH HOH . E 3 HOH A 29 229 279 HOH HOH . E 3 HOH A 30 230 49 HOH HOH . E 3 HOH A 31 231 18 HOH HOH . E 3 HOH A 32 232 98 HOH HOH . E 3 HOH A 33 233 105 HOH HOH . E 3 HOH A 34 234 40 HOH HOH . E 3 HOH A 35 235 297 HOH HOH . E 3 HOH A 36 236 50 HOH HOH . E 3 HOH A 37 237 225 HOH HOH . E 3 HOH A 38 238 31 HOH HOH . E 3 HOH A 39 239 25 HOH HOH . E 3 HOH A 40 240 112 HOH HOH . E 3 HOH A 41 241 154 HOH HOH . E 3 HOH A 42 242 127 HOH HOH . E 3 HOH A 43 243 95 HOH HOH . E 3 HOH A 44 244 93 HOH HOH . E 3 HOH A 45 245 83 HOH HOH . E 3 HOH A 46 246 3 HOH HOH . E 3 HOH A 47 247 94 HOH HOH . E 3 HOH A 48 248 43 HOH HOH . E 3 HOH A 49 249 58 HOH HOH . E 3 HOH A 50 250 204 HOH HOH . E 3 HOH A 51 251 89 HOH HOH . E 3 HOH A 52 252 182 HOH HOH . E 3 HOH A 53 253 41 HOH HOH . E 3 HOH A 54 254 185 HOH HOH . E 3 HOH A 55 255 11 HOH HOH . E 3 HOH A 56 256 118 HOH HOH . E 3 HOH A 57 257 213 HOH HOH . E 3 HOH A 58 258 97 HOH HOH . E 3 HOH A 59 259 65 HOH HOH . E 3 HOH A 60 260 164 HOH HOH . E 3 HOH A 61 261 299 HOH HOH . E 3 HOH A 62 262 104 HOH HOH . E 3 HOH A 63 263 20 HOH HOH . E 3 HOH A 64 264 293 HOH HOH . E 3 HOH A 65 265 153 HOH HOH . E 3 HOH A 66 266 285 HOH HOH . E 3 HOH A 67 267 106 HOH HOH . E 3 HOH A 68 268 30 HOH HOH . E 3 HOH A 69 269 85 HOH HOH . E 3 HOH A 70 270 70 HOH HOH . E 3 HOH A 71 271 244 HOH HOH . E 3 HOH A 72 272 181 HOH HOH . E 3 HOH A 73 273 262 HOH HOH . E 3 HOH A 74 274 263 HOH HOH . E 3 HOH A 75 275 257 HOH HOH . E 3 HOH A 76 276 113 HOH HOH . E 3 HOH A 77 277 180 HOH HOH . E 3 HOH A 78 278 128 HOH HOH . E 3 HOH A 79 279 60 HOH HOH . E 3 HOH A 80 280 73 HOH HOH . E 3 HOH A 81 281 172 HOH HOH . E 3 HOH A 82 282 12 HOH HOH . E 3 HOH A 83 283 229 HOH HOH . E 3 HOH A 84 284 120 HOH HOH . E 3 HOH A 85 285 235 HOH HOH . E 3 HOH A 86 286 129 HOH HOH . E 3 HOH A 87 287 291 HOH HOH . E 3 HOH A 88 288 168 HOH HOH . E 3 HOH A 89 289 250 HOH HOH . E 3 HOH A 90 290 160 HOH HOH . E 3 HOH A 91 291 146 HOH HOH . E 3 HOH A 92 292 132 HOH HOH . E 3 HOH A 93 293 67 HOH HOH . E 3 HOH A 94 294 195 HOH HOH . E 3 HOH A 95 295 124 HOH HOH . E 3 HOH A 96 296 21 HOH HOH . E 3 HOH A 97 297 123 HOH HOH . E 3 HOH A 98 298 294 HOH HOH . E 3 HOH A 99 299 23 HOH HOH . E 3 HOH A 100 300 232 HOH HOH . E 3 HOH A 101 301 189 HOH HOH . E 3 HOH A 102 302 302 HOH HOH . E 3 HOH A 103 303 196 HOH HOH . E 3 HOH A 104 304 304 HOH HOH . E 3 HOH A 105 305 218 HOH HOH . E 3 HOH A 106 306 159 HOH HOH . E 3 HOH A 107 307 126 HOH HOH . E 3 HOH A 108 308 88 HOH HOH . E 3 HOH A 109 309 81 HOH HOH . E 3 HOH A 110 310 16 HOH HOH . E 3 HOH A 111 311 151 HOH HOH . E 3 HOH A 112 312 209 HOH HOH . E 3 HOH A 113 313 249 HOH HOH . E 3 HOH A 114 314 238 HOH HOH . E 3 HOH A 115 315 111 HOH HOH . E 3 HOH A 116 316 47 HOH HOH . E 3 HOH A 117 317 186 HOH HOH . E 3 HOH A 118 318 283 HOH HOH . E 3 HOH A 119 319 167 HOH HOH . E 3 HOH A 120 320 198 HOH HOH . E 3 HOH A 121 321 316 HOH HOH . E 3 HOH A 122 322 273 HOH HOH . E 3 HOH A 123 323 226 HOH HOH . E 3 HOH A 124 324 141 HOH HOH . E 3 HOH A 125 325 246 HOH HOH . E 3 HOH A 126 326 310 HOH HOH . E 3 HOH A 127 327 241 HOH HOH . E 3 HOH A 128 328 219 HOH HOH . E 3 HOH A 129 329 282 HOH HOH . E 3 HOH A 130 330 254 HOH HOH . E 3 HOH A 131 331 199 HOH HOH . E 3 HOH A 132 332 188 HOH HOH . E 3 HOH A 133 333 240 HOH HOH . E 3 HOH A 134 334 207 HOH HOH . E 3 HOH A 135 335 208 HOH HOH . E 3 HOH A 136 336 313 HOH HOH . E 3 HOH A 137 337 203 HOH HOH . E 3 HOH A 138 338 275 HOH HOH . E 3 HOH A 139 339 92 HOH HOH . E 3 HOH A 140 340 45 HOH HOH . E 3 HOH A 141 341 170 HOH HOH . E 3 HOH A 142 342 131 HOH HOH . E 3 HOH A 143 343 243 HOH HOH . E 3 HOH A 144 344 251 HOH HOH . E 3 HOH A 145 345 214 HOH HOH . E 3 HOH A 146 346 290 HOH HOH . E 3 HOH A 147 347 266 HOH HOH . E 3 HOH A 148 348 174 HOH HOH . F 3 HOH B 1 301 272 HOH HOH . F 3 HOH B 2 302 157 HOH HOH . F 3 HOH B 3 303 286 HOH HOH . F 3 HOH B 4 304 90 HOH HOH . F 3 HOH B 5 305 4 HOH HOH . F 3 HOH B 6 306 230 HOH HOH . F 3 HOH B 7 307 145 HOH HOH . F 3 HOH B 8 308 288 HOH HOH . F 3 HOH B 9 309 134 HOH HOH . F 3 HOH B 10 310 130 HOH HOH . F 3 HOH B 11 311 5 HOH HOH . F 3 HOH B 12 312 252 HOH HOH . F 3 HOH B 13 313 59 HOH HOH . F 3 HOH B 14 314 200 HOH HOH . F 3 HOH B 15 315 69 HOH HOH . F 3 HOH B 16 316 231 HOH HOH . F 3 HOH B 17 317 102 HOH HOH . F 3 HOH B 18 318 166 HOH HOH . F 3 HOH B 19 319 125 HOH HOH . F 3 HOH B 20 320 152 HOH HOH . F 3 HOH B 21 321 17 HOH HOH . F 3 HOH B 22 322 277 HOH HOH . F 3 HOH B 23 323 42 HOH HOH . F 3 HOH B 24 324 68 HOH HOH . F 3 HOH B 25 325 175 HOH HOH . F 3 HOH B 26 326 295 HOH HOH . F 3 HOH B 27 327 9 HOH HOH . F 3 HOH B 28 328 177 HOH HOH . F 3 HOH B 29 329 38 HOH HOH . F 3 HOH B 30 330 1 HOH HOH . F 3 HOH B 31 331 8 HOH HOH . F 3 HOH B 32 332 84 HOH HOH . F 3 HOH B 33 333 162 HOH HOH . F 3 HOH B 34 334 119 HOH HOH . F 3 HOH B 35 335 35 HOH HOH . F 3 HOH B 36 336 79 HOH HOH . F 3 HOH B 37 337 76 HOH HOH . F 3 HOH B 38 338 284 HOH HOH . F 3 HOH B 39 339 54 HOH HOH . F 3 HOH B 40 340 6 HOH HOH . F 3 HOH B 41 341 171 HOH HOH . F 3 HOH B 42 342 37 HOH HOH . F 3 HOH B 43 343 77 HOH HOH . F 3 HOH B 44 344 139 HOH HOH . F 3 HOH B 45 345 101 HOH HOH . F 3 HOH B 46 346 147 HOH HOH . F 3 HOH B 47 347 142 HOH HOH . F 3 HOH B 48 348 80 HOH HOH . F 3 HOH B 49 349 26 HOH HOH . F 3 HOH B 50 350 179 HOH HOH . F 3 HOH B 51 351 34 HOH HOH . F 3 HOH B 52 352 36 HOH HOH . F 3 HOH B 53 353 14 HOH HOH . F 3 HOH B 54 354 190 HOH HOH . F 3 HOH B 55 355 2 HOH HOH . F 3 HOH B 56 356 103 HOH HOH . F 3 HOH B 57 357 39 HOH HOH . F 3 HOH B 58 358 72 HOH HOH . F 3 HOH B 59 359 136 HOH HOH . F 3 HOH B 60 360 27 HOH HOH . F 3 HOH B 61 361 307 HOH HOH . F 3 HOH B 62 362 149 HOH HOH . F 3 HOH B 63 363 173 HOH HOH . F 3 HOH B 64 364 169 HOH HOH . F 3 HOH B 65 365 19 HOH HOH . F 3 HOH B 66 366 148 HOH HOH . F 3 HOH B 67 367 75 HOH HOH . F 3 HOH B 68 368 267 HOH HOH . F 3 HOH B 69 369 55 HOH HOH . F 3 HOH B 70 370 96 HOH HOH . F 3 HOH B 71 371 312 HOH HOH . F 3 HOH B 72 372 71 HOH HOH . F 3 HOH B 73 373 24 HOH HOH . F 3 HOH B 74 374 253 HOH HOH . F 3 HOH B 75 375 156 HOH HOH . F 3 HOH B 76 376 187 HOH HOH . F 3 HOH B 77 377 91 HOH HOH . F 3 HOH B 78 378 22 HOH HOH . F 3 HOH B 79 379 247 HOH HOH . F 3 HOH B 80 380 140 HOH HOH . F 3 HOH B 81 381 33 HOH HOH . F 3 HOH B 82 382 205 HOH HOH . F 3 HOH B 83 383 109 HOH HOH . F 3 HOH B 84 384 222 HOH HOH . F 3 HOH B 85 385 108 HOH HOH . F 3 HOH B 86 386 61 HOH HOH . F 3 HOH B 87 387 99 HOH HOH . F 3 HOH B 88 388 62 HOH HOH . F 3 HOH B 89 389 137 HOH HOH . F 3 HOH B 90 390 56 HOH HOH . F 3 HOH B 91 391 197 HOH HOH . F 3 HOH B 92 392 46 HOH HOH . F 3 HOH B 93 393 296 HOH HOH . F 3 HOH B 94 394 239 HOH HOH . F 3 HOH B 95 395 66 HOH HOH . F 3 HOH B 96 396 201 HOH HOH . F 3 HOH B 97 397 278 HOH HOH . F 3 HOH B 98 398 48 HOH HOH . F 3 HOH B 99 399 64 HOH HOH . F 3 HOH B 100 400 150 HOH HOH . F 3 HOH B 101 401 107 HOH HOH . F 3 HOH B 102 402 280 HOH HOH . F 3 HOH B 103 403 224 HOH HOH . F 3 HOH B 104 404 314 HOH HOH . F 3 HOH B 105 405 315 HOH HOH . F 3 HOH B 106 406 206 HOH HOH . F 3 HOH B 107 407 287 HOH HOH . F 3 HOH B 108 408 165 HOH HOH . F 3 HOH B 109 409 110 HOH HOH . F 3 HOH B 110 410 44 HOH HOH . F 3 HOH B 111 411 301 HOH HOH . F 3 HOH B 112 412 276 HOH HOH . F 3 HOH B 113 413 194 HOH HOH . F 3 HOH B 114 414 311 HOH HOH . F 3 HOH B 115 415 78 HOH HOH . F 3 HOH B 116 416 300 HOH HOH . F 3 HOH B 117 417 233 HOH HOH . F 3 HOH B 118 418 144 HOH HOH . F 3 HOH B 119 419 155 HOH HOH . F 3 HOH B 120 420 133 HOH HOH . F 3 HOH B 121 421 212 HOH HOH . F 3 HOH B 122 422 183 HOH HOH . F 3 HOH B 123 423 265 HOH HOH . F 3 HOH B 124 424 86 HOH HOH . F 3 HOH B 125 425 87 HOH HOH . F 3 HOH B 126 426 268 HOH HOH . F 3 HOH B 127 427 220 HOH HOH . F 3 HOH B 128 428 121 HOH HOH . F 3 HOH B 129 429 223 HOH HOH . F 3 HOH B 130 430 163 HOH HOH . F 3 HOH B 131 431 161 HOH HOH . F 3 HOH B 132 432 298 HOH HOH . F 3 HOH B 133 433 138 HOH HOH . F 3 HOH B 134 434 303 HOH HOH . F 3 HOH B 135 435 274 HOH HOH . F 3 HOH B 136 436 289 HOH HOH . F 3 HOH B 137 437 178 HOH HOH . F 3 HOH B 138 438 217 HOH HOH . F 3 HOH B 139 439 236 HOH HOH . F 3 HOH B 140 440 234 HOH HOH . F 3 HOH B 141 441 308 HOH HOH . F 3 HOH B 142 442 256 HOH HOH . F 3 HOH B 143 443 237 HOH HOH . F 3 HOH B 144 444 221 HOH HOH . F 3 HOH B 145 445 63 HOH HOH . F 3 HOH B 146 446 306 HOH HOH . F 3 HOH B 147 447 227 HOH HOH . F 3 HOH B 148 448 184 HOH HOH . F 3 HOH B 149 449 269 HOH HOH . F 3 HOH B 150 450 122 HOH HOH . F 3 HOH B 151 451 211 HOH HOH . F 3 HOH B 152 452 255 HOH HOH . F 3 HOH B 153 453 260 HOH HOH . F 3 HOH B 154 454 309 HOH HOH . F 3 HOH B 155 455 264 HOH HOH . F 3 HOH B 156 456 261 HOH HOH . F 3 HOH B 157 457 271 HOH HOH . F 3 HOH B 158 458 305 HOH HOH . F 3 HOH B 159 459 259 HOH HOH . F 3 HOH B 160 460 158 HOH HOH . F 3 HOH B 161 461 191 HOH HOH . F 3 HOH B 162 462 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K7L . . . C 2 2.2 -2.282 -51.702 0.44 24.78 ? N1 K7L 201 B 1 HETATM 2 N N3 K7L . . . C 2 1.629 -0.629 -53.323 0.44 24.63 ? N3 K7L 201 B 1 HETATM 3 C C4 K7L . . . C 2 1.513 -3.208 -50.936 0.44 23.41 ? C4 K7L 201 B 1 HETATM 4 C C5 K7L . . . C 2 0.205 -3.069 -51.284 0.44 23.42 ? C5 K7L 201 B 1 HETATM 5 C C6 K7L . . . C 2 1.254 -1.618 -52.476 0.44 23.63 ? C6 K7L 201 B 1 HETATM 6 C C1 K7L . . . C 2 2.897 -0.315 -53.366 0.44 24.85 ? C1 K7L 201 B 1 HETATM 7 C C2 K7L . . . C 2 3.907 -0.947 -52.62 0.44 25.48 ? C2 K7L 201 B 1 HETATM 8 C C3 K7L . . . C 2 3.537 -1.955 -51.795 0.44 24.61 ? C3 K7L 201 B 1 HETATM 9 N N2 K7L . . . C 2 0.028 -2.084 -52.243 0.44 24.25 ? N2 K7L 201 B 1 HETATM 10 O O1 K7L . . . C 2 3.29 0.674 -54.177 0.44 26.89 ? O1 K7L 201 B 1 HETATM 11 O O2 K7L . . . C 2 4.348 -2.696 -51.097 0.44 32.69 ? O2 K7L 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 11 #