data_7GPW # _model_server_result.job_id 5sUiArSJueJ2EaCvdIm9-w _model_server_result.datetime_utc '2024-11-24 19:20:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7GPW # _exptl.entry_id 7GPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-iodanyl-3~{H}-pyridin-2-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GPW _cell.length_a 42.75 _cell.length_b 62.233 _cell.length_c 147.664 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C5 H4 I N O' _chem_comp.formula_weight 220.996 _chem_comp.id HHQ _chem_comp.mon_nstd_flag . _chem_comp.name 4-iodanyl-3~{H}-pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C5 HHQ doub 138 n n N1 C1 HHQ sing 139 n n O1 C1 HHQ doub 140 n n C5 C4 HHQ sing 141 n n C1 C2 HHQ sing 142 n n C4 C3 HHQ doub 143 n n C2 C3 HHQ sing 144 n n C3 I1 HHQ sing 145 n n C4 H1 HHQ sing 146 n n C5 H2 HHQ sing 147 n n C2 H3 HHQ sing 148 n n C2 H4 HHQ sing 149 n n # _atom_sites.entry_id 7GPW _atom_sites.fract_transf_matrix[1][1] 0.023392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HHQ A 1 201 202 HHQ LIG . D 3 DMS A 1 202 203 DMS DMS . E 2 HHQ B 1 201 201 HHQ LIG . F 2 HHQ B 1 202 301 HHQ LIG . G 4 HOH A 1 301 281 HOH HOH . G 4 HOH A 2 302 82 HOH HOH . G 4 HOH A 3 303 245 HOH HOH . G 4 HOH A 4 304 74 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 294 HOH HOH . G 4 HOH A 7 307 49 HOH HOH . G 4 HOH A 8 308 15 HOH HOH . G 4 HOH A 9 309 135 HOH HOH . G 4 HOH A 10 310 225 HOH HOH . G 4 HOH A 11 311 32 HOH HOH . G 4 HOH A 12 312 115 HOH HOH . G 4 HOH A 13 313 327 HOH HOH . G 4 HOH A 14 314 215 HOH HOH . G 4 HOH A 15 315 52 HOH HOH . G 4 HOH A 16 316 242 HOH HOH . G 4 HOH A 17 317 117 HOH HOH . G 4 HOH A 18 318 112 HOH HOH . G 4 HOH A 19 319 53 HOH HOH . G 4 HOH A 20 320 29 HOH HOH . G 4 HOH A 21 321 226 HOH HOH . G 4 HOH A 22 322 322 HOH HOH . G 4 HOH A 23 323 116 HOH HOH . G 4 HOH A 24 324 28 HOH HOH . G 4 HOH A 25 325 40 HOH HOH . G 4 HOH A 26 326 7 HOH HOH . G 4 HOH A 27 327 100 HOH HOH . G 4 HOH A 28 328 105 HOH HOH . G 4 HOH A 29 329 25 HOH HOH . G 4 HOH A 30 330 57 HOH HOH . G 4 HOH A 31 331 279 HOH HOH . G 4 HOH A 32 332 31 HOH HOH . G 4 HOH A 33 333 258 HOH HOH . G 4 HOH A 34 334 127 HOH HOH . G 4 HOH A 35 335 248 HOH HOH . G 4 HOH A 36 336 89 HOH HOH . G 4 HOH A 37 337 20 HOH HOH . G 4 HOH A 38 338 118 HOH HOH . G 4 HOH A 39 339 210 HOH HOH . G 4 HOH A 40 340 10 HOH HOH . G 4 HOH A 41 341 293 HOH HOH . G 4 HOH A 42 342 18 HOH HOH . G 4 HOH A 43 343 216 HOH HOH . G 4 HOH A 44 344 65 HOH HOH . G 4 HOH A 45 345 254 HOH HOH . G 4 HOH A 46 346 204 HOH HOH . G 4 HOH A 47 347 292 HOH HOH . G 4 HOH A 48 348 94 HOH HOH . G 4 HOH A 49 349 97 HOH HOH . G 4 HOH A 50 350 95 HOH HOH . G 4 HOH A 51 351 41 HOH HOH . G 4 HOH A 52 352 50 HOH HOH . G 4 HOH A 53 353 154 HOH HOH . G 4 HOH A 54 354 153 HOH HOH . G 4 HOH A 55 355 218 HOH HOH . G 4 HOH A 56 356 43 HOH HOH . G 4 HOH A 57 357 3 HOH HOH . G 4 HOH A 58 358 299 HOH HOH . G 4 HOH A 59 359 11 HOH HOH . G 4 HOH A 60 360 83 HOH HOH . G 4 HOH A 61 361 30 HOH HOH . G 4 HOH A 62 362 129 HOH HOH . G 4 HOH A 63 363 182 HOH HOH . G 4 HOH A 64 364 93 HOH HOH . G 4 HOH A 65 365 51 HOH HOH . G 4 HOH A 66 366 297 HOH HOH . G 4 HOH A 67 367 172 HOH HOH . G 4 HOH A 68 368 325 HOH HOH . G 4 HOH A 69 369 185 HOH HOH . G 4 HOH A 70 370 326 HOH HOH . G 4 HOH A 71 371 244 HOH HOH . G 4 HOH A 72 372 85 HOH HOH . G 4 HOH A 73 373 164 HOH HOH . G 4 HOH A 74 374 70 HOH HOH . G 4 HOH A 75 375 104 HOH HOH . G 4 HOH A 76 376 250 HOH HOH . G 4 HOH A 77 377 23 HOH HOH . G 4 HOH A 78 378 106 HOH HOH . G 4 HOH A 79 379 60 HOH HOH . G 4 HOH A 80 380 285 HOH HOH . G 4 HOH A 81 381 213 HOH HOH . G 4 HOH A 82 382 128 HOH HOH . G 4 HOH A 83 383 146 HOH HOH . G 4 HOH A 84 384 12 HOH HOH . G 4 HOH A 85 385 120 HOH HOH . G 4 HOH A 86 386 238 HOH HOH . G 4 HOH A 87 387 235 HOH HOH . G 4 HOH A 88 388 262 HOH HOH . G 4 HOH A 89 389 113 HOH HOH . G 4 HOH A 90 390 67 HOH HOH . G 4 HOH A 91 391 58 HOH HOH . G 4 HOH A 92 392 73 HOH HOH . G 4 HOH A 93 393 180 HOH HOH . G 4 HOH A 94 394 263 HOH HOH . G 4 HOH A 95 395 302 HOH HOH . G 4 HOH A 96 396 160 HOH HOH . G 4 HOH A 97 397 21 HOH HOH . G 4 HOH A 98 398 168 HOH HOH . G 4 HOH A 99 399 159 HOH HOH . G 4 HOH A 100 400 132 HOH HOH . G 4 HOH A 101 401 229 HOH HOH . G 4 HOH A 102 402 329 HOH HOH . G 4 HOH A 103 403 291 HOH HOH . G 4 HOH A 104 404 126 HOH HOH . G 4 HOH A 105 405 123 HOH HOH . G 4 HOH A 106 406 209 HOH HOH . G 4 HOH A 107 407 196 HOH HOH . G 4 HOH A 108 408 193 HOH HOH . G 4 HOH A 109 409 124 HOH HOH . G 4 HOH A 110 410 189 HOH HOH . G 4 HOH A 111 411 232 HOH HOH . G 4 HOH A 112 412 169 HOH HOH . G 4 HOH A 113 413 16 HOH HOH . G 4 HOH A 114 414 34 HOH HOH . G 4 HOH A 115 415 151 HOH HOH . G 4 HOH A 116 416 304 HOH HOH . G 4 HOH A 117 417 319 HOH HOH . G 4 HOH A 118 418 186 HOH HOH . G 4 HOH A 119 419 111 HOH HOH . G 4 HOH A 120 420 81 HOH HOH . G 4 HOH A 121 421 47 HOH HOH . G 4 HOH A 122 422 317 HOH HOH . G 4 HOH A 123 423 257 HOH HOH . G 4 HOH A 124 424 88 HOH HOH . G 4 HOH A 125 425 283 HOH HOH . G 4 HOH A 126 426 318 HOH HOH . G 4 HOH A 127 427 321 HOH HOH . G 4 HOH A 128 428 195 HOH HOH . G 4 HOH A 129 429 273 HOH HOH . G 4 HOH A 130 430 249 HOH HOH . G 4 HOH A 131 431 141 HOH HOH . G 4 HOH A 132 432 246 HOH HOH . G 4 HOH A 133 433 320 HOH HOH . G 4 HOH A 134 434 167 HOH HOH . G 4 HOH A 135 435 208 HOH HOH . G 4 HOH A 136 436 328 HOH HOH . G 4 HOH A 137 437 282 HOH HOH . G 4 HOH A 138 438 310 HOH HOH . G 4 HOH A 139 439 199 HOH HOH . G 4 HOH A 140 440 219 HOH HOH . G 4 HOH A 141 441 241 HOH HOH . G 4 HOH A 142 442 170 HOH HOH . G 4 HOH A 143 443 198 HOH HOH . G 4 HOH A 144 444 207 HOH HOH . G 4 HOH A 145 445 188 HOH HOH . G 4 HOH A 146 446 333 HOH HOH . G 4 HOH A 147 447 275 HOH HOH . G 4 HOH A 148 448 243 HOH HOH . G 4 HOH A 149 449 203 HOH HOH . G 4 HOH A 150 450 92 HOH HOH . G 4 HOH A 151 451 45 HOH HOH . G 4 HOH A 152 452 251 HOH HOH . G 4 HOH A 153 453 131 HOH HOH . G 4 HOH A 154 454 290 HOH HOH . G 4 HOH A 155 455 214 HOH HOH . G 4 HOH A 156 456 266 HOH HOH . H 4 HOH B 1 301 90 HOH HOH . H 4 HOH B 2 302 277 HOH HOH . H 4 HOH B 3 303 288 HOH HOH . H 4 HOH B 4 304 286 HOH HOH . H 4 HOH B 5 305 230 HOH HOH . H 4 HOH B 6 306 166 HOH HOH . H 4 HOH B 7 307 98 HOH HOH . H 4 HOH B 8 308 145 HOH HOH . H 4 HOH B 9 309 162 HOH HOH . H 4 HOH B 10 310 4 HOH HOH . H 4 HOH B 11 311 130 HOH HOH . H 4 HOH B 12 312 175 HOH HOH . H 4 HOH B 13 313 298 HOH HOH . H 4 HOH B 14 314 9 HOH HOH . H 4 HOH B 15 315 76 HOH HOH . H 4 HOH B 16 316 59 HOH HOH . H 4 HOH B 17 317 101 HOH HOH . H 4 HOH B 18 318 42 HOH HOH . H 4 HOH B 19 319 142 HOH HOH . H 4 HOH B 20 320 171 HOH HOH . H 4 HOH B 21 321 265 HOH HOH . H 4 HOH B 22 322 295 HOH HOH . H 4 HOH B 23 323 125 HOH HOH . H 4 HOH B 24 324 77 HOH HOH . H 4 HOH B 25 325 197 HOH HOH . H 4 HOH B 26 326 54 HOH HOH . H 4 HOH B 27 327 17 HOH HOH . H 4 HOH B 28 328 39 HOH HOH . H 4 HOH B 29 329 177 HOH HOH . H 4 HOH B 30 330 69 HOH HOH . H 4 HOH B 31 331 80 HOH HOH . H 4 HOH B 32 332 119 HOH HOH . H 4 HOH B 33 333 38 HOH HOH . H 4 HOH B 34 334 24 HOH HOH . H 4 HOH B 35 335 33 HOH HOH . H 4 HOH B 36 336 1 HOH HOH . H 4 HOH B 37 337 109 HOH HOH . H 4 HOH B 38 338 179 HOH HOH . H 4 HOH B 39 339 6 HOH HOH . H 4 HOH B 40 340 278 HOH HOH . H 4 HOH B 41 341 84 HOH HOH . H 4 HOH B 42 342 79 HOH HOH . H 4 HOH B 43 343 26 HOH HOH . H 4 HOH B 44 344 253 HOH HOH . H 4 HOH B 45 345 36 HOH HOH . H 4 HOH B 46 346 14 HOH HOH . H 4 HOH B 47 347 8 HOH HOH . H 4 HOH B 48 348 35 HOH HOH . H 4 HOH B 49 349 37 HOH HOH . H 4 HOH B 50 350 102 HOH HOH . H 4 HOH B 51 351 27 HOH HOH . H 4 HOH B 52 352 2 HOH HOH . H 4 HOH B 53 353 201 HOH HOH . H 4 HOH B 54 354 99 HOH HOH . H 4 HOH B 55 355 152 HOH HOH . H 4 HOH B 56 356 19 HOH HOH . H 4 HOH B 57 357 222 HOH HOH . H 4 HOH B 58 358 284 HOH HOH . H 4 HOH B 59 359 139 HOH HOH . H 4 HOH B 60 360 296 HOH HOH . H 4 HOH B 61 361 173 HOH HOH . H 4 HOH B 62 362 267 HOH HOH . H 4 HOH B 63 363 96 HOH HOH . H 4 HOH B 64 364 144 HOH HOH . H 4 HOH B 65 365 156 HOH HOH . H 4 HOH B 66 366 75 HOH HOH . H 4 HOH B 67 367 231 HOH HOH . H 4 HOH B 68 368 178 HOH HOH . H 4 HOH B 69 369 134 HOH HOH . H 4 HOH B 70 370 149 HOH HOH . H 4 HOH B 71 371 301 HOH HOH . H 4 HOH B 72 372 187 HOH HOH . H 4 HOH B 73 373 252 HOH HOH . H 4 HOH B 74 374 140 HOH HOH . H 4 HOH B 75 375 103 HOH HOH . H 4 HOH B 76 376 72 HOH HOH . H 4 HOH B 77 377 205 HOH HOH . H 4 HOH B 78 378 150 HOH HOH . H 4 HOH B 79 379 212 HOH HOH . H 4 HOH B 80 380 91 HOH HOH . H 4 HOH B 81 381 136 HOH HOH . H 4 HOH B 82 382 22 HOH HOH . H 4 HOH B 83 383 137 HOH HOH . H 4 HOH B 84 384 272 HOH HOH . H 4 HOH B 85 385 147 HOH HOH . H 4 HOH B 86 386 56 HOH HOH . H 4 HOH B 87 387 62 HOH HOH . H 4 HOH B 88 388 108 HOH HOH . H 4 HOH B 89 389 46 HOH HOH . H 4 HOH B 90 390 55 HOH HOH . H 4 HOH B 91 391 190 HOH HOH . H 4 HOH B 92 392 66 HOH HOH . H 4 HOH B 93 393 206 HOH HOH . H 4 HOH B 94 394 194 HOH HOH . H 4 HOH B 95 395 165 HOH HOH . H 4 HOH B 96 396 315 HOH HOH . H 4 HOH B 97 397 110 HOH HOH . H 4 HOH B 98 398 71 HOH HOH . H 4 HOH B 99 399 148 HOH HOH . H 4 HOH B 100 400 48 HOH HOH . H 4 HOH B 101 401 64 HOH HOH . H 4 HOH B 102 402 314 HOH HOH . H 4 HOH B 103 403 330 HOH HOH . H 4 HOH B 104 404 107 HOH HOH . H 4 HOH B 105 405 260 HOH HOH . H 4 HOH B 106 406 44 HOH HOH . H 4 HOH B 107 407 223 HOH HOH . H 4 HOH B 108 408 224 HOH HOH . H 4 HOH B 109 409 61 HOH HOH . H 4 HOH B 110 410 276 HOH HOH . H 4 HOH B 111 411 247 HOH HOH . H 4 HOH B 112 412 78 HOH HOH . H 4 HOH B 113 413 183 HOH HOH . H 4 HOH B 114 414 300 HOH HOH . H 4 HOH B 115 415 280 HOH HOH . H 4 HOH B 116 416 121 HOH HOH . H 4 HOH B 117 417 287 HOH HOH . H 4 HOH B 118 418 86 HOH HOH . H 4 HOH B 119 419 237 HOH HOH . H 4 HOH B 120 420 133 HOH HOH . H 4 HOH B 121 421 236 HOH HOH . H 4 HOH B 122 422 233 HOH HOH . H 4 HOH B 123 423 163 HOH HOH . H 4 HOH B 124 424 220 HOH HOH . H 4 HOH B 125 425 303 HOH HOH . H 4 HOH B 126 426 155 HOH HOH . H 4 HOH B 127 427 234 HOH HOH . H 4 HOH B 128 428 87 HOH HOH . H 4 HOH B 129 429 289 HOH HOH . H 4 HOH B 130 430 138 HOH HOH . H 4 HOH B 131 431 161 HOH HOH . H 4 HOH B 132 432 311 HOH HOH . H 4 HOH B 133 433 239 HOH HOH . H 4 HOH B 134 434 324 HOH HOH . H 4 HOH B 135 435 256 HOH HOH . H 4 HOH B 136 436 274 HOH HOH . H 4 HOH B 137 437 268 HOH HOH . H 4 HOH B 138 438 331 HOH HOH . H 4 HOH B 139 439 217 HOH HOH . H 4 HOH B 140 440 308 HOH HOH . H 4 HOH B 141 441 323 HOH HOH . H 4 HOH B 142 442 332 HOH HOH . H 4 HOH B 143 443 63 HOH HOH . H 4 HOH B 144 444 227 HOH HOH . H 4 HOH B 145 445 306 HOH HOH . H 4 HOH B 146 446 221 HOH HOH . H 4 HOH B 147 447 309 HOH HOH . H 4 HOH B 148 448 122 HOH HOH . H 4 HOH B 149 449 312 HOH HOH . H 4 HOH B 150 450 211 HOH HOH . H 4 HOH B 151 451 264 HOH HOH . H 4 HOH B 152 452 261 HOH HOH . H 4 HOH B 153 453 255 HOH HOH . H 4 HOH B 154 454 158 HOH HOH . H 4 HOH B 155 455 259 HOH HOH . H 4 HOH B 156 456 174 HOH HOH . H 4 HOH B 157 457 271 HOH HOH . H 4 HOH B 158 458 305 HOH HOH . H 4 HOH B 159 459 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HHQ . . . F 2 -19.417 -0.544 -50.517 0.44 60.82 ? C4 HHQ 202 B 1 HETATM 2 C C5 HHQ . . . F 2 -18.767 0.38 -51.248 0.44 60.65 ? C5 HHQ 202 B 1 HETATM 3 N N1 HHQ . . . F 2 -18.938 1.71 -51.025 0.44 59.8 ? N1 HHQ 202 B 1 HETATM 4 C C3 HHQ . . . F 2 -20.278 -0.035 -49.507 0.44 61.15 ? C3 HHQ 202 B 1 HETATM 5 O O1 HHQ . . . F 2 -19.84 3.456 -49.928 0.44 60.87 ? O1 HHQ 202 B 1 HETATM 6 C C1 HHQ . . . F 2 -19.761 2.224 -50.059 0.44 60.08 ? C1 HHQ 202 B 1 HETATM 7 C C2 HHQ . . . F 2 -20.462 1.266 -49.272 0.44 59.95 ? C2 HHQ 202 B 1 HETATM 8 I I1 HHQ . . . F 2 -21.28 -1.414 -48.314 0.44 65.32 ? I1 HHQ 202 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #