data_7GQU # _model_server_result.job_id Zf1f3RH1zHQOFcsvXqgwcA _model_server_result.datetime_utc '2024-11-14 18:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 7GQU # _exptl.entry_id 7GQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GQU _cell.length_a 46.255 _cell.length_b 83.802 _cell.length_c 119.624 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 212 A CYS 727 1_555 D C7 X1L . A X1L 1002 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.82 ? covale ? covale2 A SG CYS 212 A CYS 727 1_555 D C7 X1L . A X1L 1002 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A O GLY 30 A GLY 545 1_555 F NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A SG CYS 393 A CYS 908 1_555 B ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 420 A CYS 935 1_555 B ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A SG CYS 421 A CYS 936 1_555 B ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A SG CYS 424 A CYS 939 1_555 B ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 E O1 GOL . A GOL 1003 1_555 F NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 F NA NA . A NA 1004 1_555 G O HOH . A HOH 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 F NA NA . A NA 1004 1_555 G O HOH . A HOH 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc9 F NA NA . A NA 1004 1_555 G O HOH . A HOH 1268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 7GQU _atom_sites.fract_transf_matrix[1][1] 0.021619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1000 1000 ZN ZN . C 3 ADP A 1 1001 1001 ADP ADP . D 4 X1L A 1 1002 1002 X1L XXX . E 5 GOL A 1 1003 1003 GOL GOL . F 6 NA A 1 1004 1004 NA NA . G 7 HOH A 1 1101 155 HOH HOH . G 7 HOH A 2 1102 111 HOH HOH . G 7 HOH A 3 1103 106 HOH HOH . G 7 HOH A 4 1104 117 HOH HOH . G 7 HOH A 5 1105 115 HOH HOH . G 7 HOH A 6 1106 114 HOH HOH . G 7 HOH A 7 1107 75 HOH HOH . G 7 HOH A 8 1108 169 HOH HOH . G 7 HOH A 9 1109 45 HOH HOH . G 7 HOH A 10 1110 170 HOH HOH . G 7 HOH A 11 1111 80 HOH HOH . G 7 HOH A 12 1112 149 HOH HOH . G 7 HOH A 13 1113 96 HOH HOH . G 7 HOH A 14 1114 113 HOH HOH . G 7 HOH A 15 1115 124 HOH HOH . G 7 HOH A 16 1116 109 HOH HOH . G 7 HOH A 17 1117 35 HOH HOH . G 7 HOH A 18 1118 76 HOH HOH . G 7 HOH A 19 1119 203 HOH HOH . G 7 HOH A 20 1120 16 HOH HOH . G 7 HOH A 21 1121 110 HOH HOH . G 7 HOH A 22 1122 74 HOH HOH . G 7 HOH A 23 1123 134 HOH HOH . G 7 HOH A 24 1124 88 HOH HOH . G 7 HOH A 25 1125 77 HOH HOH . G 7 HOH A 26 1126 108 HOH HOH . G 7 HOH A 27 1127 116 HOH HOH . G 7 HOH A 28 1128 176 HOH HOH . G 7 HOH A 29 1129 142 HOH HOH . G 7 HOH A 30 1130 13 HOH HOH . G 7 HOH A 31 1131 21 HOH HOH . G 7 HOH A 32 1132 11 HOH HOH . G 7 HOH A 33 1133 175 HOH HOH . G 7 HOH A 34 1134 99 HOH HOH . G 7 HOH A 35 1135 23 HOH HOH . G 7 HOH A 36 1136 72 HOH HOH . G 7 HOH A 37 1137 39 HOH HOH . G 7 HOH A 38 1138 54 HOH HOH . G 7 HOH A 39 1139 132 HOH HOH . G 7 HOH A 40 1140 4 HOH HOH . G 7 HOH A 41 1141 112 HOH HOH . G 7 HOH A 42 1142 196 HOH HOH . G 7 HOH A 43 1143 152 HOH HOH . G 7 HOH A 44 1144 9 HOH HOH . G 7 HOH A 45 1145 6 HOH HOH . G 7 HOH A 46 1146 7 HOH HOH . G 7 HOH A 47 1147 37 HOH HOH . G 7 HOH A 48 1148 154 HOH HOH . G 7 HOH A 49 1149 162 HOH HOH . G 7 HOH A 50 1150 119 HOH HOH . G 7 HOH A 51 1151 33 HOH HOH . G 7 HOH A 52 1152 24 HOH HOH . G 7 HOH A 53 1153 199 HOH HOH . G 7 HOH A 54 1154 123 HOH HOH . G 7 HOH A 55 1155 73 HOH HOH . G 7 HOH A 56 1156 194 HOH HOH . G 7 HOH A 57 1157 5 HOH HOH . G 7 HOH A 58 1158 17 HOH HOH . G 7 HOH A 59 1159 122 HOH HOH . G 7 HOH A 60 1160 189 HOH HOH . G 7 HOH A 61 1161 129 HOH HOH . G 7 HOH A 62 1162 150 HOH HOH . G 7 HOH A 63 1163 161 HOH HOH . G 7 HOH A 64 1164 58 HOH HOH . G 7 HOH A 65 1165 65 HOH HOH . G 7 HOH A 66 1166 81 HOH HOH . G 7 HOH A 67 1167 78 HOH HOH . G 7 HOH A 68 1168 107 HOH HOH . G 7 HOH A 69 1169 191 HOH HOH . G 7 HOH A 70 1170 52 HOH HOH . G 7 HOH A 71 1171 43 HOH HOH . G 7 HOH A 72 1172 121 HOH HOH . G 7 HOH A 73 1173 168 HOH HOH . G 7 HOH A 74 1174 183 HOH HOH . G 7 HOH A 75 1175 98 HOH HOH . G 7 HOH A 76 1176 47 HOH HOH . G 7 HOH A 77 1177 93 HOH HOH . G 7 HOH A 78 1178 36 HOH HOH . G 7 HOH A 79 1179 44 HOH HOH . G 7 HOH A 80 1180 163 HOH HOH . G 7 HOH A 81 1181 62 HOH HOH . G 7 HOH A 82 1182 156 HOH HOH . G 7 HOH A 83 1183 135 HOH HOH . G 7 HOH A 84 1184 3 HOH HOH . G 7 HOH A 85 1185 125 HOH HOH . G 7 HOH A 86 1186 63 HOH HOH . G 7 HOH A 87 1187 89 HOH HOH . G 7 HOH A 88 1188 2 HOH HOH . G 7 HOH A 89 1189 195 HOH HOH . G 7 HOH A 90 1190 130 HOH HOH . G 7 HOH A 91 1191 185 HOH HOH . G 7 HOH A 92 1192 177 HOH HOH . G 7 HOH A 93 1193 105 HOH HOH . G 7 HOH A 94 1194 159 HOH HOH . G 7 HOH A 95 1195 167 HOH HOH . G 7 HOH A 96 1196 56 HOH HOH . G 7 HOH A 97 1197 104 HOH HOH . G 7 HOH A 98 1198 87 HOH HOH . G 7 HOH A 99 1199 61 HOH HOH . G 7 HOH A 100 1200 148 HOH HOH . G 7 HOH A 101 1201 49 HOH HOH . G 7 HOH A 102 1202 71 HOH HOH . G 7 HOH A 103 1203 92 HOH HOH . G 7 HOH A 104 1204 8 HOH HOH . G 7 HOH A 105 1205 20 HOH HOH . G 7 HOH A 106 1206 27 HOH HOH . G 7 HOH A 107 1207 32 HOH HOH . G 7 HOH A 108 1208 12 HOH HOH . G 7 HOH A 109 1209 83 HOH HOH . G 7 HOH A 110 1210 139 HOH HOH . G 7 HOH A 111 1211 67 HOH HOH . G 7 HOH A 112 1212 193 HOH HOH . G 7 HOH A 113 1213 48 HOH HOH . G 7 HOH A 114 1214 151 HOH HOH . G 7 HOH A 115 1215 69 HOH HOH . G 7 HOH A 116 1216 85 HOH HOH . G 7 HOH A 117 1217 127 HOH HOH . G 7 HOH A 118 1218 128 HOH HOH . G 7 HOH A 119 1219 188 HOH HOH . G 7 HOH A 120 1220 144 HOH HOH . G 7 HOH A 121 1221 59 HOH HOH . G 7 HOH A 122 1222 60 HOH HOH . G 7 HOH A 123 1223 131 HOH HOH . G 7 HOH A 124 1224 147 HOH HOH . G 7 HOH A 125 1225 101 HOH HOH . G 7 HOH A 126 1226 97 HOH HOH . G 7 HOH A 127 1227 137 HOH HOH . G 7 HOH A 128 1228 94 HOH HOH . G 7 HOH A 129 1229 164 HOH HOH . G 7 HOH A 130 1230 136 HOH HOH . G 7 HOH A 131 1231 55 HOH HOH . G 7 HOH A 132 1232 19 HOH HOH . G 7 HOH A 133 1233 14 HOH HOH . G 7 HOH A 134 1234 158 HOH HOH . G 7 HOH A 135 1235 38 HOH HOH . G 7 HOH A 136 1236 90 HOH HOH . G 7 HOH A 137 1237 66 HOH HOH . G 7 HOH A 138 1238 26 HOH HOH . G 7 HOH A 139 1239 30 HOH HOH . G 7 HOH A 140 1240 1 HOH HOH . G 7 HOH A 141 1241 51 HOH HOH . G 7 HOH A 142 1242 91 HOH HOH . G 7 HOH A 143 1243 103 HOH HOH . G 7 HOH A 144 1244 34 HOH HOH . G 7 HOH A 145 1245 50 HOH HOH . G 7 HOH A 146 1246 29 HOH HOH . G 7 HOH A 147 1247 133 HOH HOH . G 7 HOH A 148 1248 173 HOH HOH . G 7 HOH A 149 1249 190 HOH HOH . G 7 HOH A 150 1250 160 HOH HOH . G 7 HOH A 151 1251 22 HOH HOH . G 7 HOH A 152 1252 157 HOH HOH . G 7 HOH A 153 1253 10 HOH HOH . G 7 HOH A 154 1254 100 HOH HOH . G 7 HOH A 155 1255 64 HOH HOH . G 7 HOH A 156 1256 68 HOH HOH . G 7 HOH A 157 1257 42 HOH HOH . G 7 HOH A 158 1258 192 HOH HOH . G 7 HOH A 159 1259 15 HOH HOH . G 7 HOH A 160 1260 18 HOH HOH . G 7 HOH A 161 1261 25 HOH HOH . G 7 HOH A 162 1262 28 HOH HOH . G 7 HOH A 163 1263 79 HOH HOH . G 7 HOH A 164 1264 40 HOH HOH . G 7 HOH A 165 1265 70 HOH HOH . G 7 HOH A 166 1266 86 HOH HOH . G 7 HOH A 167 1267 197 HOH HOH . G 7 HOH A 168 1268 82 HOH HOH . G 7 HOH A 169 1269 126 HOH HOH . G 7 HOH A 170 1270 84 HOH HOH . G 7 HOH A 171 1271 145 HOH HOH . G 7 HOH A 172 1272 31 HOH HOH . G 7 HOH A 173 1273 165 HOH HOH . G 7 HOH A 174 1274 182 HOH HOH . G 7 HOH A 175 1275 53 HOH HOH . G 7 HOH A 176 1276 143 HOH HOH . G 7 HOH A 177 1277 198 HOH HOH . G 7 HOH A 178 1278 153 HOH HOH . G 7 HOH A 179 1279 120 HOH HOH . G 7 HOH A 180 1280 118 HOH HOH . G 7 HOH A 181 1281 166 HOH HOH . G 7 HOH A 182 1282 201 HOH HOH . G 7 HOH A 183 1283 202 HOH HOH . G 7 HOH A 184 1284 46 HOH HOH . G 7 HOH A 185 1285 102 HOH HOH . G 7 HOH A 186 1286 179 HOH HOH . G 7 HOH A 187 1287 172 HOH HOH . G 7 HOH A 188 1288 200 HOH HOH . G 7 HOH A 189 1289 204 HOH HOH . G 7 HOH A 190 1290 141 HOH HOH . G 7 HOH A 191 1291 146 HOH HOH . G 7 HOH A 192 1292 95 HOH HOH . G 7 HOH A 193 1293 186 HOH HOH . G 7 HOH A 194 1294 181 HOH HOH . G 7 HOH A 195 1295 171 HOH HOH . G 7 HOH A 196 1296 41 HOH HOH . G 7 HOH A 197 1297 174 HOH HOH . G 7 HOH A 198 1298 57 HOH HOH . G 7 HOH A 199 1299 205 HOH HOH . G 7 HOH A 200 1300 180 HOH HOH . G 7 HOH A 201 1301 178 HOH HOH . G 7 HOH A 202 1302 187 HOH HOH . G 7 HOH A 203 1303 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 7.967 39.343 26.098 1 48.27 ? C1 GOL 1003 A 1 HETATM 2 O O1 GOL . . . E 5 8.427 40.168 27.182 1 39.44 ? O1 GOL 1003 A 1 HETATM 3 C C2 GOL . . . E 5 7.244 40.271 25.037 1 51.9 ? C2 GOL 1003 A 1 HETATM 4 O O2 GOL . . . E 5 8.06 41.229 24.509 1 45.36 ? O2 GOL 1003 A 1 HETATM 5 C C3 GOL . . . E 5 6.695 39.368 23.889 1 63.77 ? C3 GOL 1003 A 1 HETATM 6 O O3 GOL . . . E 5 6.185 40.274 22.911 1 58.97 ? O3 GOL 1003 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #