data_7GRT # _model_server_result.job_id KTIobbgQb1XHltlVRKVWuQ _model_server_result.datetime_utc '2024-11-05 23:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":607}' # _entry.id 7GRT # _exptl.entry_id 7GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GRT _cell.length_a 67.78 _cell.length_b 99.79 _cell.length_c 103.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASN 221 B ASN 221 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc2 B OD1 ASN 221 B ASN 221 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 B O PHE 223 B PHE 223 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 B O ASP 263 B ASP 263 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 B OD1 ASP 263 B ASP 263 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 K NA NA . B NA 402 1_555 O O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GRT _atom_sites.fract_transf_matrix[1][1] 0.014754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y0L A 1 601 601 Y0L LIG . D 3 DMS A 1 602 12 DMS DMS . E 3 DMS A 1 603 4 DMS DMS . F 3 DMS A 1 604 5 DMS DMS . G 3 DMS A 1 605 8 DMS DMS . H 3 DMS A 1 606 9 DMS DMS . I 3 DMS A 1 607 10 DMS DMS . J 3 DMS B 1 401 401 DMS DMS . K 4 NA B 1 402 1 NA NA . L 3 DMS B 1 403 23 DMS DMS . M 3 DMS B 1 404 34 DMS DMS . N 5 HOH A 1 701 174 HOH HOH . N 5 HOH A 2 702 60 HOH HOH . N 5 HOH A 3 703 109 HOH HOH . N 5 HOH A 4 704 327 HOH HOH . N 5 HOH A 5 705 175 HOH HOH . N 5 HOH A 6 706 330 HOH HOH . N 5 HOH A 7 707 227 HOH HOH . N 5 HOH A 8 708 43 HOH HOH . N 5 HOH A 9 709 135 HOH HOH . N 5 HOH A 10 710 138 HOH HOH . N 5 HOH A 11 711 6 HOH HOH . N 5 HOH A 12 712 130 HOH HOH . N 5 HOH A 13 713 36 HOH HOH . N 5 HOH A 14 714 68 HOH HOH . N 5 HOH A 15 715 262 HOH HOH . N 5 HOH A 16 716 313 HOH HOH . N 5 HOH A 17 717 225 HOH HOH . N 5 HOH A 18 718 315 HOH HOH . N 5 HOH A 19 719 22 HOH HOH . N 5 HOH A 20 720 177 HOH HOH . N 5 HOH A 21 721 340 HOH HOH . N 5 HOH A 22 722 25 HOH HOH . N 5 HOH A 23 723 204 HOH HOH . N 5 HOH A 24 724 3 HOH HOH . N 5 HOH A 25 725 85 HOH HOH . N 5 HOH A 26 726 41 HOH HOH . N 5 HOH A 27 727 277 HOH HOH . N 5 HOH A 28 728 333 HOH HOH . N 5 HOH A 29 729 58 HOH HOH . N 5 HOH A 30 730 44 HOH HOH . N 5 HOH A 31 731 14 HOH HOH . N 5 HOH A 32 732 66 HOH HOH . N 5 HOH A 33 733 184 HOH HOH . N 5 HOH A 34 734 83 HOH HOH . N 5 HOH A 35 735 106 HOH HOH . N 5 HOH A 36 736 10 HOH HOH . N 5 HOH A 37 737 338 HOH HOH . N 5 HOH A 38 738 7 HOH HOH . N 5 HOH A 39 739 236 HOH HOH . N 5 HOH A 40 740 167 HOH HOH . N 5 HOH A 41 741 235 HOH HOH . N 5 HOH A 42 742 33 HOH HOH . N 5 HOH A 43 743 132 HOH HOH . N 5 HOH A 44 744 73 HOH HOH . N 5 HOH A 45 745 134 HOH HOH . N 5 HOH A 46 746 1 HOH HOH . N 5 HOH A 47 747 164 HOH HOH . N 5 HOH A 48 748 242 HOH HOH . N 5 HOH A 49 749 21 HOH HOH . N 5 HOH A 50 750 122 HOH HOH . N 5 HOH A 51 751 226 HOH HOH . N 5 HOH A 52 752 11 HOH HOH . N 5 HOH A 53 753 341 HOH HOH . N 5 HOH A 54 754 20 HOH HOH . N 5 HOH A 55 755 13 HOH HOH . N 5 HOH A 56 756 172 HOH HOH . N 5 HOH A 57 757 252 HOH HOH . N 5 HOH A 58 758 70 HOH HOH . N 5 HOH A 59 759 121 HOH HOH . N 5 HOH A 60 760 9 HOH HOH . N 5 HOH A 61 761 165 HOH HOH . N 5 HOH A 62 762 53 HOH HOH . N 5 HOH A 63 763 187 HOH HOH . N 5 HOH A 64 764 72 HOH HOH . N 5 HOH A 65 765 319 HOH HOH . N 5 HOH A 66 766 317 HOH HOH . N 5 HOH A 67 767 94 HOH HOH . N 5 HOH A 68 768 326 HOH HOH . N 5 HOH A 69 769 26 HOH HOH . N 5 HOH A 70 770 69 HOH HOH . N 5 HOH A 71 771 62 HOH HOH . N 5 HOH A 72 772 332 HOH HOH . N 5 HOH A 73 773 90 HOH HOH . N 5 HOH A 74 774 115 HOH HOH . N 5 HOH A 75 775 78 HOH HOH . N 5 HOH A 76 776 15 HOH HOH . N 5 HOH A 77 777 82 HOH HOH . N 5 HOH A 78 778 250 HOH HOH . N 5 HOH A 79 779 334 HOH HOH . N 5 HOH A 80 780 152 HOH HOH . N 5 HOH A 81 781 88 HOH HOH . N 5 HOH A 82 782 316 HOH HOH . N 5 HOH A 83 783 97 HOH HOH . N 5 HOH A 84 784 312 HOH HOH . N 5 HOH A 85 785 120 HOH HOH . N 5 HOH A 86 786 151 HOH HOH . N 5 HOH A 87 787 76 HOH HOH . N 5 HOH A 88 788 12 HOH HOH . N 5 HOH A 89 789 116 HOH HOH . N 5 HOH A 90 790 276 HOH HOH . N 5 HOH A 91 791 127 HOH HOH . N 5 HOH A 92 792 329 HOH HOH . N 5 HOH A 93 793 29 HOH HOH . N 5 HOH A 94 794 311 HOH HOH . N 5 HOH A 95 795 105 HOH HOH . N 5 HOH A 96 796 61 HOH HOH . N 5 HOH A 97 797 258 HOH HOH . N 5 HOH A 98 798 270 HOH HOH . N 5 HOH A 99 799 49 HOH HOH . N 5 HOH A 100 800 294 HOH HOH . N 5 HOH A 101 801 318 HOH HOH . N 5 HOH A 102 802 52 HOH HOH . N 5 HOH A 103 803 38 HOH HOH . N 5 HOH A 104 804 314 HOH HOH . N 5 HOH A 105 805 157 HOH HOH . N 5 HOH A 106 806 93 HOH HOH . N 5 HOH A 107 807 19 HOH HOH . N 5 HOH A 108 808 114 HOH HOH . N 5 HOH A 109 809 166 HOH HOH . N 5 HOH A 110 810 8 HOH HOH . N 5 HOH A 111 811 118 HOH HOH . N 5 HOH A 112 812 108 HOH HOH . N 5 HOH A 113 813 142 HOH HOH . N 5 HOH A 114 814 64 HOH HOH . N 5 HOH A 115 815 89 HOH HOH . N 5 HOH A 116 816 47 HOH HOH . N 5 HOH A 117 817 81 HOH HOH . N 5 HOH A 118 818 30 HOH HOH . N 5 HOH A 119 819 103 HOH HOH . N 5 HOH A 120 820 216 HOH HOH . N 5 HOH A 121 821 192 HOH HOH . N 5 HOH A 122 822 215 HOH HOH . N 5 HOH A 123 823 213 HOH HOH . N 5 HOH A 124 824 107 HOH HOH . N 5 HOH A 125 825 5 HOH HOH . N 5 HOH A 126 826 128 HOH HOH . N 5 HOH A 127 827 79 HOH HOH . N 5 HOH A 128 828 285 HOH HOH . N 5 HOH A 129 829 99 HOH HOH . N 5 HOH A 130 830 17 HOH HOH . N 5 HOH A 131 831 195 HOH HOH . N 5 HOH A 132 832 146 HOH HOH . N 5 HOH A 133 833 59 HOH HOH . N 5 HOH A 134 834 284 HOH HOH . N 5 HOH A 135 835 160 HOH HOH . N 5 HOH A 136 836 173 HOH HOH . N 5 HOH A 137 837 208 HOH HOH . N 5 HOH A 138 838 185 HOH HOH . N 5 HOH A 139 839 133 HOH HOH . N 5 HOH A 140 840 123 HOH HOH . N 5 HOH A 141 841 199 HOH HOH . N 5 HOH A 142 842 303 HOH HOH . N 5 HOH A 143 843 321 HOH HOH . N 5 HOH A 144 844 331 HOH HOH . N 5 HOH A 145 845 266 HOH HOH . N 5 HOH A 146 846 305 HOH HOH . N 5 HOH A 147 847 267 HOH HOH . N 5 HOH A 148 848 80 HOH HOH . N 5 HOH A 149 849 335 HOH HOH . N 5 HOH A 150 850 336 HOH HOH . N 5 HOH A 151 851 323 HOH HOH . O 5 HOH B 1 501 256 HOH HOH . O 5 HOH B 2 502 310 HOH HOH . O 5 HOH B 3 503 63 HOH HOH . O 5 HOH B 4 504 339 HOH HOH . O 5 HOH B 5 505 197 HOH HOH . O 5 HOH B 6 506 198 HOH HOH . O 5 HOH B 7 507 147 HOH HOH . O 5 HOH B 8 508 40 HOH HOH . O 5 HOH B 9 509 35 HOH HOH . O 5 HOH B 10 510 74 HOH HOH . O 5 HOH B 11 511 55 HOH HOH . O 5 HOH B 12 512 144 HOH HOH . O 5 HOH B 13 513 229 HOH HOH . O 5 HOH B 14 514 279 HOH HOH . O 5 HOH B 15 515 234 HOH HOH . O 5 HOH B 16 516 288 HOH HOH . O 5 HOH B 17 517 249 HOH HOH . O 5 HOH B 18 518 34 HOH HOH . O 5 HOH B 19 519 51 HOH HOH . O 5 HOH B 20 520 4 HOH HOH . O 5 HOH B 21 521 87 HOH HOH . O 5 HOH B 22 522 289 HOH HOH . O 5 HOH B 23 523 322 HOH HOH . O 5 HOH B 24 524 328 HOH HOH . O 5 HOH B 25 525 292 HOH HOH . O 5 HOH B 26 526 56 HOH HOH . O 5 HOH B 27 527 324 HOH HOH . O 5 HOH B 28 528 238 HOH HOH . O 5 HOH B 29 529 263 HOH HOH . O 5 HOH B 30 530 119 HOH HOH . O 5 HOH B 31 531 101 HOH HOH . O 5 HOH B 32 532 57 HOH HOH . O 5 HOH B 33 533 18 HOH HOH . O 5 HOH B 34 534 42 HOH HOH . O 5 HOH B 35 535 180 HOH HOH . O 5 HOH B 36 536 2 HOH HOH . O 5 HOH B 37 537 264 HOH HOH . O 5 HOH B 38 538 28 HOH HOH . O 5 HOH B 39 539 27 HOH HOH . O 5 HOH B 40 540 39 HOH HOH . O 5 HOH B 41 541 307 HOH HOH . O 5 HOH B 42 542 222 HOH HOH . O 5 HOH B 43 543 16 HOH HOH . O 5 HOH B 44 544 139 HOH HOH . O 5 HOH B 45 545 104 HOH HOH . O 5 HOH B 46 546 50 HOH HOH . O 5 HOH B 47 547 169 HOH HOH . O 5 HOH B 48 548 178 HOH HOH . O 5 HOH B 49 549 183 HOH HOH . O 5 HOH B 50 550 75 HOH HOH . O 5 HOH B 51 551 278 HOH HOH . O 5 HOH B 52 552 280 HOH HOH . O 5 HOH B 53 553 273 HOH HOH . O 5 HOH B 54 554 111 HOH HOH . O 5 HOH B 55 555 251 HOH HOH . O 5 HOH B 56 556 84 HOH HOH . O 5 HOH B 57 557 48 HOH HOH . O 5 HOH B 58 558 212 HOH HOH . O 5 HOH B 59 559 96 HOH HOH . O 5 HOH B 60 560 220 HOH HOH . O 5 HOH B 61 561 129 HOH HOH . O 5 HOH B 62 562 112 HOH HOH . O 5 HOH B 63 563 291 HOH HOH . O 5 HOH B 64 564 301 HOH HOH . O 5 HOH B 65 565 141 HOH HOH . O 5 HOH B 66 566 320 HOH HOH . O 5 HOH B 67 567 23 HOH HOH . O 5 HOH B 68 568 296 HOH HOH . O 5 HOH B 69 569 54 HOH HOH . O 5 HOH B 70 570 77 HOH HOH . O 5 HOH B 71 571 91 HOH HOH . O 5 HOH B 72 572 206 HOH HOH . O 5 HOH B 73 573 253 HOH HOH . O 5 HOH B 74 574 325 HOH HOH . O 5 HOH B 75 575 287 HOH HOH . O 5 HOH B 76 576 32 HOH HOH . O 5 HOH B 77 577 275 HOH HOH . O 5 HOH B 78 578 297 HOH HOH . O 5 HOH B 79 579 102 HOH HOH . O 5 HOH B 80 580 194 HOH HOH . O 5 HOH B 81 581 176 HOH HOH . O 5 HOH B 82 582 274 HOH HOH . O 5 HOH B 83 583 286 HOH HOH . O 5 HOH B 84 584 143 HOH HOH . O 5 HOH B 85 585 125 HOH HOH . O 5 HOH B 86 586 168 HOH HOH . O 5 HOH B 87 587 188 HOH HOH . O 5 HOH B 88 588 117 HOH HOH . O 5 HOH B 89 589 221 HOH HOH . O 5 HOH B 90 590 342 HOH HOH . O 5 HOH B 91 591 218 HOH HOH . O 5 HOH B 92 592 309 HOH HOH . O 5 HOH B 93 593 300 HOH HOH . O 5 HOH B 94 594 210 HOH HOH . O 5 HOH B 95 595 243 HOH HOH . O 5 HOH B 96 596 126 HOH HOH . O 5 HOH B 97 597 231 HOH HOH . O 5 HOH B 98 598 161 HOH HOH . O 5 HOH B 99 599 24 HOH HOH . O 5 HOH B 100 600 230 HOH HOH . O 5 HOH B 101 601 45 HOH HOH . O 5 HOH B 102 602 205 HOH HOH . O 5 HOH B 103 603 308 HOH HOH . O 5 HOH B 104 604 150 HOH HOH . O 5 HOH B 105 605 268 HOH HOH . O 5 HOH B 106 606 154 HOH HOH . O 5 HOH B 107 607 223 HOH HOH . O 5 HOH B 108 608 136 HOH HOH . O 5 HOH B 109 609 245 HOH HOH . O 5 HOH B 110 610 158 HOH HOH . O 5 HOH B 111 611 261 HOH HOH . O 5 HOH B 112 612 248 HOH HOH . O 5 HOH B 113 613 337 HOH HOH . O 5 HOH B 114 614 293 HOH HOH . O 5 HOH B 115 615 269 HOH HOH . O 5 HOH B 116 616 214 HOH HOH . O 5 HOH B 117 617 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 3 -19.236 -5.716 -34.619 1 73.79 ? S DMS 607 A 1 HETATM 2 O O DMS . . . I 3 -20.263 -5.966 -35.639 1 49.39 ? O DMS 607 A 1 HETATM 3 C C1 DMS . . . I 3 -18.246 -7.231 -34.548 1 45.72 ? C1 DMS 607 A 1 HETATM 4 C C2 DMS . . . I 3 -20.02 -5.874 -32.985 1 54.92 ? C2 DMS 607 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #