data_7GS5 # _model_server_result.job_id RuLd3enwuRLoIk35IBPbyA _model_server_result.datetime_utc '2024-11-21 12:47:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gs5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":409}' # _entry.id 7GS5 # _exptl.entry_id 7GS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GS5 _cell.length_a 67.92 _cell.length_b 99.96 _cell.length_c 104.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C6 0TI . A 0TI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale2 B SG CYS 44 B CYS 44 1_555 N C6 0TI . B 0TI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale3 B SG CYS 145 B CYS 145 1_555 M C6 0TI . B 0TI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc1 B O ASN 221 B ASN 221 1_555 Q MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 B OD1 ASN 221 B ASN 221 1_555 Q MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 B O PHE 223 B PHE 223 1_555 Q MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 B OD1 ASP 263 B ASP 263 1_555 Q MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc5 Q MG MG . B MG 405 1_555 S O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 102 n n S C1 DMS sing 103 n n S C2 DMS sing 104 n n C1 H11 DMS sing 105 n n C1 H12 DMS sing 106 n n C1 H13 DMS sing 107 n n C2 H21 DMS sing 108 n n C2 H22 DMS sing 109 n n C2 H23 DMS sing 110 n n # _atom_sites.entry_id 7GS5 _atom_sites.fract_transf_matrix[1][1] 0.014723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0TI A 1 401 401 0TI LIG . D 3 DMS A 1 402 501 DMS DMS . E 3 DMS A 1 403 601 DMS DMS . F 3 DMS A 1 404 701 DMS DMS . G 3 DMS A 1 405 801 DMS DMS . H 3 DMS A 1 406 901 DMS DMS . I 3 DMS A 1 407 1001 DMS DMS . J 3 DMS A 1 408 1201 DMS DMS . K 3 DMS A 1 409 1301 DMS DMS . L 4 SO4 A 1 410 2 SO4 SO4 . M 2 0TI B 1 401 401 0TI LIG . N 2 0TI B 1 402 702 0TI LIG . O 3 DMS B 1 403 402 DMS DMS . P 4 SO4 B 1 404 1 SO4 SO4 . Q 5 MG B 1 405 1 MG MG . R 6 HOH A 1 501 105 HOH HOH . R 6 HOH A 2 502 170 HOH HOH . R 6 HOH A 3 503 166 HOH HOH . R 6 HOH A 4 504 149 HOH HOH . R 6 HOH A 5 505 174 HOH HOH . R 6 HOH A 6 506 74 HOH HOH . R 6 HOH A 7 507 46 HOH HOH . R 6 HOH A 8 508 2 HOH HOH . R 6 HOH A 9 509 148 HOH HOH . R 6 HOH A 10 510 36 HOH HOH . R 6 HOH A 11 511 144 HOH HOH . R 6 HOH A 12 512 99 HOH HOH . R 6 HOH A 13 513 146 HOH HOH . R 6 HOH A 14 514 87 HOH HOH . R 6 HOH A 15 515 100 HOH HOH . R 6 HOH A 16 516 3 HOH HOH . R 6 HOH A 17 517 49 HOH HOH . R 6 HOH A 18 518 71 HOH HOH . R 6 HOH A 19 519 70 HOH HOH . R 6 HOH A 20 520 154 HOH HOH . R 6 HOH A 21 521 54 HOH HOH . R 6 HOH A 22 522 6 HOH HOH . R 6 HOH A 23 523 29 HOH HOH . R 6 HOH A 24 524 60 HOH HOH . R 6 HOH A 25 525 83 HOH HOH . R 6 HOH A 26 526 62 HOH HOH . R 6 HOH A 27 527 185 HOH HOH . R 6 HOH A 28 528 32 HOH HOH . R 6 HOH A 29 529 110 HOH HOH . R 6 HOH A 30 530 76 HOH HOH . R 6 HOH A 31 531 93 HOH HOH . R 6 HOH A 32 532 43 HOH HOH . R 6 HOH A 33 533 33 HOH HOH . R 6 HOH A 34 534 16 HOH HOH . R 6 HOH A 35 535 117 HOH HOH . R 6 HOH A 36 536 48 HOH HOH . R 6 HOH A 37 537 35 HOH HOH . R 6 HOH A 38 538 122 HOH HOH . R 6 HOH A 39 539 175 HOH HOH . R 6 HOH A 40 540 81 HOH HOH . R 6 HOH A 41 541 96 HOH HOH . R 6 HOH A 42 542 38 HOH HOH . R 6 HOH A 43 543 155 HOH HOH . R 6 HOH A 44 544 85 HOH HOH . R 6 HOH A 45 545 181 HOH HOH . R 6 HOH A 46 546 42 HOH HOH . R 6 HOH A 47 547 27 HOH HOH . R 6 HOH A 48 548 10 HOH HOH . R 6 HOH A 49 549 31 HOH HOH . R 6 HOH A 50 550 106 HOH HOH . R 6 HOH A 51 551 187 HOH HOH . R 6 HOH A 52 552 18 HOH HOH . R 6 HOH A 53 553 88 HOH HOH . R 6 HOH A 54 554 113 HOH HOH . R 6 HOH A 55 555 24 HOH HOH . R 6 HOH A 56 556 68 HOH HOH . R 6 HOH A 57 557 128 HOH HOH . R 6 HOH A 58 558 101 HOH HOH . R 6 HOH A 59 559 79 HOH HOH . R 6 HOH A 60 560 78 HOH HOH . R 6 HOH A 61 561 82 HOH HOH . R 6 HOH A 62 562 188 HOH HOH . R 6 HOH A 63 563 25 HOH HOH . R 6 HOH A 64 564 9 HOH HOH . R 6 HOH A 65 565 64 HOH HOH . R 6 HOH A 66 566 151 HOH HOH . R 6 HOH A 67 567 14 HOH HOH . R 6 HOH A 68 568 94 HOH HOH . R 6 HOH A 69 569 75 HOH HOH . R 6 HOH A 70 570 145 HOH HOH . R 6 HOH A 71 571 92 HOH HOH . R 6 HOH A 72 572 26 HOH HOH . R 6 HOH A 73 573 143 HOH HOH . R 6 HOH A 74 574 50 HOH HOH . R 6 HOH A 75 575 132 HOH HOH . R 6 HOH A 76 576 86 HOH HOH . R 6 HOH A 77 577 59 HOH HOH . R 6 HOH A 78 578 112 HOH HOH . R 6 HOH A 79 579 23 HOH HOH . R 6 HOH A 80 580 73 HOH HOH . R 6 HOH A 81 581 172 HOH HOH . R 6 HOH A 82 582 66 HOH HOH . R 6 HOH A 83 583 103 HOH HOH . R 6 HOH A 84 584 116 HOH HOH . R 6 HOH A 85 585 147 HOH HOH . R 6 HOH A 86 586 77 HOH HOH . R 6 HOH A 87 587 108 HOH HOH . R 6 HOH A 88 588 126 HOH HOH . R 6 HOH A 89 589 12 HOH HOH . R 6 HOH A 90 590 52 HOH HOH . R 6 HOH A 91 591 141 HOH HOH . R 6 HOH A 92 592 11 HOH HOH . R 6 HOH A 93 593 95 HOH HOH . R 6 HOH A 94 594 183 HOH HOH . R 6 HOH A 95 595 98 HOH HOH . R 6 HOH A 96 596 8 HOH HOH . R 6 HOH A 97 597 182 HOH HOH . R 6 HOH A 98 598 171 HOH HOH . R 6 HOH A 99 599 179 HOH HOH . R 6 HOH A 100 600 57 HOH HOH . R 6 HOH A 101 601 15 HOH HOH . R 6 HOH A 102 602 44 HOH HOH . R 6 HOH A 103 603 114 HOH HOH . R 6 HOH A 104 604 169 HOH HOH . R 6 HOH A 105 605 142 HOH HOH . R 6 HOH A 106 606 102 HOH HOH . R 6 HOH A 107 607 156 HOH HOH . R 6 HOH A 108 608 176 HOH HOH . R 6 HOH A 109 609 186 HOH HOH . R 6 HOH A 110 610 180 HOH HOH . R 6 HOH A 111 611 134 HOH HOH . R 6 HOH A 112 612 150 HOH HOH . R 6 HOH A 113 613 123 HOH HOH . R 6 HOH A 114 614 129 HOH HOH . R 6 HOH A 115 615 130 HOH HOH . R 6 HOH A 116 616 184 HOH HOH . R 6 HOH A 117 617 157 HOH HOH . R 6 HOH A 118 618 163 HOH HOH . R 6 HOH A 119 619 118 HOH HOH . R 6 HOH A 120 620 161 HOH HOH . R 6 HOH A 121 621 164 HOH HOH . R 6 HOH A 122 622 135 HOH HOH . R 6 HOH A 123 623 115 HOH HOH . R 6 HOH A 124 624 133 HOH HOH . R 6 HOH A 125 625 124 HOH HOH . R 6 HOH A 126 626 121 HOH HOH . R 6 HOH A 127 627 119 HOH HOH . R 6 HOH A 128 628 125 HOH HOH . S 6 HOH B 1 501 89 HOH HOH . S 6 HOH B 2 502 39 HOH HOH . S 6 HOH B 3 503 7 HOH HOH . S 6 HOH B 4 504 111 HOH HOH . S 6 HOH B 5 505 56 HOH HOH . S 6 HOH B 6 506 167 HOH HOH . S 6 HOH B 7 507 178 HOH HOH . S 6 HOH B 8 508 30 HOH HOH . S 6 HOH B 9 509 160 HOH HOH . S 6 HOH B 10 510 153 HOH HOH . S 6 HOH B 11 511 21 HOH HOH . S 6 HOH B 12 512 136 HOH HOH . S 6 HOH B 13 513 91 HOH HOH . S 6 HOH B 14 514 138 HOH HOH . S 6 HOH B 15 515 159 HOH HOH . S 6 HOH B 16 516 19 HOH HOH . S 6 HOH B 17 517 104 HOH HOH . S 6 HOH B 18 518 53 HOH HOH . S 6 HOH B 19 519 22 HOH HOH . S 6 HOH B 20 520 34 HOH HOH . S 6 HOH B 21 521 28 HOH HOH . S 6 HOH B 22 522 107 HOH HOH . S 6 HOH B 23 523 20 HOH HOH . S 6 HOH B 24 524 41 HOH HOH . S 6 HOH B 25 525 17 HOH HOH . S 6 HOH B 26 526 58 HOH HOH . S 6 HOH B 27 527 72 HOH HOH . S 6 HOH B 28 528 1 HOH HOH . S 6 HOH B 29 529 140 HOH HOH . S 6 HOH B 30 530 45 HOH HOH . S 6 HOH B 31 531 152 HOH HOH . S 6 HOH B 32 532 51 HOH HOH . S 6 HOH B 33 533 67 HOH HOH . S 6 HOH B 34 534 162 HOH HOH . S 6 HOH B 35 535 61 HOH HOH . S 6 HOH B 36 536 90 HOH HOH . S 6 HOH B 37 537 69 HOH HOH . S 6 HOH B 38 538 55 HOH HOH . S 6 HOH B 39 539 40 HOH HOH . S 6 HOH B 40 540 37 HOH HOH . S 6 HOH B 41 541 47 HOH HOH . S 6 HOH B 42 542 137 HOH HOH . S 6 HOH B 43 543 63 HOH HOH . S 6 HOH B 44 544 177 HOH HOH . S 6 HOH B 45 545 139 HOH HOH . S 6 HOH B 46 546 168 HOH HOH . S 6 HOH B 47 547 65 HOH HOH . S 6 HOH B 48 548 173 HOH HOH . S 6 HOH B 49 549 84 HOH HOH . S 6 HOH B 50 550 4 HOH HOH . S 6 HOH B 51 551 80 HOH HOH . S 6 HOH B 52 552 5 HOH HOH . S 6 HOH B 53 553 97 HOH HOH . S 6 HOH B 54 554 165 HOH HOH . S 6 HOH B 55 555 13 HOH HOH . S 6 HOH B 56 556 131 HOH HOH . S 6 HOH B 57 557 109 HOH HOH . S 6 HOH B 58 558 120 HOH HOH . S 6 HOH B 59 559 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . K 3 -26.586 -4.973 -27.104 1 106.86 ? S DMS 409 A 1 HETATM 2 O O DMS . . . K 3 -27.11 -3.906 -27.967 1 70.53 ? O DMS 409 A 1 HETATM 3 C C1 DMS . . . K 3 -25.403 -4.161 -25.99 1 59.89 ? C1 DMS 409 A 1 HETATM 4 C C2 DMS . . . K 3 -27.887 -5.372 -25.895 1 52.3 ? C2 DMS 409 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #