data_7GS8 # _model_server_result.job_id 1FLl3PcZGxtsPq8ood8G4g _model_server_result.datetime_utc '2024-11-22 06:55:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GS8 # _exptl.entry_id 7GS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.295 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N},~{N},5,6-tetramethylthieno[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GS8 _cell.length_a 89.816 _cell.length_b 89.816 _cell.length_c 106.543 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H13 N3 S' _chem_comp.formula_weight 207.295 _chem_comp.id GV1 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N},~{N},5,6-tetramethylthieno[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C3 GV1 sing 129 n n C3 S1 GV1 sing 130 n y C3 C2 GV1 doub 131 n y S1 C4 GV1 sing 132 n y C2 C1 GV1 sing 133 n n C2 C5 GV1 sing 134 n y C4 C5 GV1 doub 135 n y C4 N2 GV1 sing 136 n y C5 C6 GV1 sing 137 n y N2 C7 GV1 doub 138 n y C6 N3 GV1 sing 139 n n C6 N1 GV1 doub 140 n y C7 N1 GV1 sing 141 n y C9 N3 GV1 sing 142 n n N3 C8 GV1 sing 143 n n C7 H1 GV1 sing 144 n n C8 H2 GV1 sing 145 n n C8 H3 GV1 sing 146 n n C8 H4 GV1 sing 147 n n C10 H5 GV1 sing 148 n n C10 H6 GV1 sing 149 n n C10 H7 GV1 sing 150 n n C1 H8 GV1 sing 151 n n C1 H9 GV1 sing 152 n n C1 H10 GV1 sing 153 n n C9 H11 GV1 sing 154 n n C9 H12 GV1 sing 155 n n C9 H13 GV1 sing 156 n n # _atom_sites.entry_id 7GS8 _atom_sites.fract_transf_matrix[1][1] 0.011134 _atom_sites.fract_transf_matrix[1][2] 0.006428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GV1 A 1 401 301 GV1 LIG . C 2 GV1 A 1 402 302 GV1 LIG . D 2 GV1 A 1 403 303 GV1 LIG . E 2 GV1 A 1 404 304 GV1 LIG . F 2 GV1 A 1 405 305 GV1 LIG . G 3 TRS A 1 406 500 TRS TRS . H 4 HOH A 1 501 634 HOH HOH . H 4 HOH A 2 502 654 HOH HOH . H 4 HOH A 3 503 703 HOH HOH . H 4 HOH A 4 504 673 HOH HOH . H 4 HOH A 5 505 517 HOH HOH . H 4 HOH A 6 506 569 HOH HOH . H 4 HOH A 7 507 421 HOH HOH . H 4 HOH A 8 508 628 HOH HOH . H 4 HOH A 9 509 589 HOH HOH . H 4 HOH A 10 510 464 HOH HOH . H 4 HOH A 11 511 693 HOH HOH . H 4 HOH A 12 512 482 HOH HOH . H 4 HOH A 13 513 491 HOH HOH . H 4 HOH A 14 514 524 HOH HOH . H 4 HOH A 15 515 423 HOH HOH . H 4 HOH A 16 516 579 HOH HOH . H 4 HOH A 17 517 696 HOH HOH . H 4 HOH A 18 518 536 HOH HOH . H 4 HOH A 19 519 466 HOH HOH . H 4 HOH A 20 520 611 HOH HOH . H 4 HOH A 21 521 470 HOH HOH . H 4 HOH A 22 522 441 HOH HOH . H 4 HOH A 23 523 598 HOH HOH . H 4 HOH A 24 524 566 HOH HOH . H 4 HOH A 25 525 419 HOH HOH . H 4 HOH A 26 526 587 HOH HOH . H 4 HOH A 27 527 430 HOH HOH . H 4 HOH A 28 528 448 HOH HOH . H 4 HOH A 29 529 429 HOH HOH . H 4 HOH A 30 530 688 HOH HOH . H 4 HOH A 31 531 669 HOH HOH . H 4 HOH A 32 532 406 HOH HOH . H 4 HOH A 33 533 689 HOH HOH . H 4 HOH A 34 534 635 HOH HOH . H 4 HOH A 35 535 676 HOH HOH . H 4 HOH A 36 536 481 HOH HOH . H 4 HOH A 37 537 452 HOH HOH . H 4 HOH A 38 538 580 HOH HOH . H 4 HOH A 39 539 402 HOH HOH . H 4 HOH A 40 540 436 HOH HOH . H 4 HOH A 41 541 702 HOH HOH . H 4 HOH A 42 542 631 HOH HOH . H 4 HOH A 43 543 414 HOH HOH . H 4 HOH A 44 544 549 HOH HOH . H 4 HOH A 45 545 449 HOH HOH . H 4 HOH A 46 546 664 HOH HOH . H 4 HOH A 47 547 461 HOH HOH . H 4 HOH A 48 548 658 HOH HOH . H 4 HOH A 49 549 413 HOH HOH . H 4 HOH A 50 550 666 HOH HOH . H 4 HOH A 51 551 404 HOH HOH . H 4 HOH A 52 552 411 HOH HOH . H 4 HOH A 53 553 528 HOH HOH . H 4 HOH A 54 554 497 HOH HOH . H 4 HOH A 55 555 559 HOH HOH . H 4 HOH A 56 556 409 HOH HOH . H 4 HOH A 57 557 405 HOH HOH . H 4 HOH A 58 558 407 HOH HOH . H 4 HOH A 59 559 434 HOH HOH . H 4 HOH A 60 560 479 HOH HOH . H 4 HOH A 61 561 465 HOH HOH . H 4 HOH A 62 562 427 HOH HOH . H 4 HOH A 63 563 605 HOH HOH . H 4 HOH A 64 564 493 HOH HOH . H 4 HOH A 65 565 675 HOH HOH . H 4 HOH A 66 566 625 HOH HOH . H 4 HOH A 67 567 412 HOH HOH . H 4 HOH A 68 568 450 HOH HOH . H 4 HOH A 69 569 501 HOH HOH . H 4 HOH A 70 570 417 HOH HOH . H 4 HOH A 71 571 526 HOH HOH . H 4 HOH A 72 572 683 HOH HOH . H 4 HOH A 73 573 503 HOH HOH . H 4 HOH A 74 574 697 HOH HOH . H 4 HOH A 75 575 504 HOH HOH . H 4 HOH A 76 576 543 HOH HOH . H 4 HOH A 77 577 633 HOH HOH . H 4 HOH A 78 578 699 HOH HOH . H 4 HOH A 79 579 619 HOH HOH . H 4 HOH A 80 580 509 HOH HOH . H 4 HOH A 81 581 698 HOH HOH . H 4 HOH A 82 582 426 HOH HOH . H 4 HOH A 83 583 556 HOH HOH . H 4 HOH A 84 584 446 HOH HOH . H 4 HOH A 85 585 468 HOH HOH . H 4 HOH A 86 586 447 HOH HOH . H 4 HOH A 87 587 431 HOH HOH . H 4 HOH A 88 588 408 HOH HOH . H 4 HOH A 89 589 489 HOH HOH . H 4 HOH A 90 590 460 HOH HOH . H 4 HOH A 91 591 403 HOH HOH . H 4 HOH A 92 592 410 HOH HOH . H 4 HOH A 93 593 415 HOH HOH . H 4 HOH A 94 594 540 HOH HOH . H 4 HOH A 95 595 695 HOH HOH . H 4 HOH A 96 596 467 HOH HOH . H 4 HOH A 97 597 443 HOH HOH . H 4 HOH A 98 598 575 HOH HOH . H 4 HOH A 99 599 463 HOH HOH . H 4 HOH A 100 600 627 HOH HOH . H 4 HOH A 101 601 554 HOH HOH . H 4 HOH A 102 602 692 HOH HOH . H 4 HOH A 103 603 577 HOH HOH . H 4 HOH A 104 604 437 HOH HOH . H 4 HOH A 105 605 420 HOH HOH . H 4 HOH A 106 606 527 HOH HOH . H 4 HOH A 107 607 418 HOH HOH . H 4 HOH A 108 608 533 HOH HOH . H 4 HOH A 109 609 521 HOH HOH . H 4 HOH A 110 610 581 HOH HOH . H 4 HOH A 111 611 530 HOH HOH . H 4 HOH A 112 612 636 HOH HOH . H 4 HOH A 113 613 513 HOH HOH . H 4 HOH A 114 614 520 HOH HOH . H 4 HOH A 115 615 440 HOH HOH . H 4 HOH A 116 616 469 HOH HOH . H 4 HOH A 117 617 459 HOH HOH . H 4 HOH A 118 618 519 HOH HOH . H 4 HOH A 119 619 505 HOH HOH . H 4 HOH A 120 620 553 HOH HOH . H 4 HOH A 121 621 486 HOH HOH . H 4 HOH A 122 622 455 HOH HOH . H 4 HOH A 123 623 535 HOH HOH . H 4 HOH A 124 624 616 HOH HOH . H 4 HOH A 125 625 576 HOH HOH . H 4 HOH A 126 626 438 HOH HOH . H 4 HOH A 127 627 522 HOH HOH . H 4 HOH A 128 628 451 HOH HOH . H 4 HOH A 129 629 490 HOH HOH . H 4 HOH A 130 630 424 HOH HOH . H 4 HOH A 131 631 590 HOH HOH . H 4 HOH A 132 632 704 HOH HOH . H 4 HOH A 133 633 602 HOH HOH . H 4 HOH A 134 634 456 HOH HOH . H 4 HOH A 135 635 700 HOH HOH . H 4 HOH A 136 636 439 HOH HOH . H 4 HOH A 137 637 416 HOH HOH . H 4 HOH A 138 638 454 HOH HOH . H 4 HOH A 139 639 475 HOH HOH . H 4 HOH A 140 640 551 HOH HOH . H 4 HOH A 141 641 561 HOH HOH . H 4 HOH A 142 642 672 HOH HOH . H 4 HOH A 143 643 546 HOH HOH . H 4 HOH A 144 644 507 HOH HOH . H 4 HOH A 145 645 492 HOH HOH . H 4 HOH A 146 646 484 HOH HOH . H 4 HOH A 147 647 496 HOH HOH . H 4 HOH A 148 648 539 HOH HOH . H 4 HOH A 149 649 422 HOH HOH . H 4 HOH A 150 650 488 HOH HOH . H 4 HOH A 151 651 657 HOH HOH . H 4 HOH A 152 652 474 HOH HOH . H 4 HOH A 153 653 552 HOH HOH . H 4 HOH A 154 654 648 HOH HOH . H 4 HOH A 155 655 562 HOH HOH . H 4 HOH A 156 656 555 HOH HOH . H 4 HOH A 157 657 638 HOH HOH . H 4 HOH A 158 658 476 HOH HOH . H 4 HOH A 159 659 442 HOH HOH . H 4 HOH A 160 660 563 HOH HOH . H 4 HOH A 161 661 498 HOH HOH . H 4 HOH A 162 662 506 HOH HOH . H 4 HOH A 163 663 478 HOH HOH . H 4 HOH A 164 664 614 HOH HOH . H 4 HOH A 165 665 684 HOH HOH . H 4 HOH A 166 666 560 HOH HOH . H 4 HOH A 167 667 457 HOH HOH . H 4 HOH A 168 668 668 HOH HOH . H 4 HOH A 169 669 594 HOH HOH . H 4 HOH A 170 670 458 HOH HOH . H 4 HOH A 171 671 472 HOH HOH . H 4 HOH A 172 672 510 HOH HOH . H 4 HOH A 173 673 514 HOH HOH . H 4 HOH A 174 674 432 HOH HOH . H 4 HOH A 175 675 624 HOH HOH . H 4 HOH A 176 676 453 HOH HOH . H 4 HOH A 177 677 646 HOH HOH . H 4 HOH A 178 678 701 HOH HOH . H 4 HOH A 179 679 653 HOH HOH . H 4 HOH A 180 680 665 HOH HOH . H 4 HOH A 181 681 637 HOH HOH . H 4 HOH A 182 682 639 HOH HOH . H 4 HOH A 183 683 523 HOH HOH . H 4 HOH A 184 684 661 HOH HOH . H 4 HOH A 185 685 647 HOH HOH . H 4 HOH A 186 686 679 HOH HOH . H 4 HOH A 187 687 502 HOH HOH . H 4 HOH A 188 688 542 HOH HOH . H 4 HOH A 189 689 567 HOH HOH . H 4 HOH A 190 690 618 HOH HOH . H 4 HOH A 191 691 659 HOH HOH . H 4 HOH A 192 692 538 HOH HOH . H 4 HOH A 193 693 687 HOH HOH . H 4 HOH A 194 694 565 HOH HOH . H 4 HOH A 195 695 656 HOH HOH . H 4 HOH A 196 696 597 HOH HOH . H 4 HOH A 197 697 596 HOH HOH . H 4 HOH A 198 698 662 HOH HOH . H 4 HOH A 199 699 621 HOH HOH . H 4 HOH A 200 700 685 HOH HOH . H 4 HOH A 201 701 645 HOH HOH . H 4 HOH A 202 702 630 HOH HOH . H 4 HOH A 203 703 529 HOH HOH . H 4 HOH A 204 704 617 HOH HOH . H 4 HOH A 205 705 674 HOH HOH . H 4 HOH A 206 706 694 HOH HOH . H 4 HOH A 207 707 574 HOH HOH . H 4 HOH A 208 708 487 HOH HOH . H 4 HOH A 209 709 433 HOH HOH . H 4 HOH A 210 710 652 HOH HOH . H 4 HOH A 211 711 682 HOH HOH . H 4 HOH A 212 712 483 HOH HOH . H 4 HOH A 213 713 541 HOH HOH . H 4 HOH A 214 714 595 HOH HOH . H 4 HOH A 215 715 678 HOH HOH . H 4 HOH A 216 716 650 HOH HOH . H 4 HOH A 217 717 670 HOH HOH . H 4 HOH A 218 718 651 HOH HOH . H 4 HOH A 219 719 548 HOH HOH . H 4 HOH A 220 720 690 HOH HOH . H 4 HOH A 221 721 663 HOH HOH . H 4 HOH A 222 722 512 HOH HOH . H 4 HOH A 223 723 471 HOH HOH . H 4 HOH A 224 724 681 HOH HOH . H 4 HOH A 225 725 525 HOH HOH . H 4 HOH A 226 726 655 HOH HOH . H 4 HOH A 227 727 649 HOH HOH . H 4 HOH A 228 728 671 HOH HOH . H 4 HOH A 229 729 608 HOH HOH . H 4 HOH A 230 730 686 HOH HOH . H 4 HOH A 231 731 518 HOH HOH . H 4 HOH A 232 732 578 HOH HOH . H 4 HOH A 233 733 473 HOH HOH . H 4 HOH A 234 734 667 HOH HOH . H 4 HOH A 235 735 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GV1 . . . C 2 45.021 -17.176 -29.129 0.44 58.26 ? N1 GV1 402 A 1 HETATM 2 N N3 GV1 . . . C 2 42.732 -16.709 -29.499 0.44 55.22 ? N3 GV1 402 A 1 HETATM 3 C C4 GV1 . . . C 2 44.965 -16.412 -26.49 0.44 52.5 ? C4 GV1 402 A 1 HETATM 4 C C5 GV1 . . . C 2 43.762 -16.324 -27.218 0.44 54.11 ? C5 GV1 402 A 1 HETATM 5 C C6 GV1 . . . C 2 43.839 -16.738 -28.597 0.44 56.68 ? C6 GV1 402 A 1 HETATM 6 C C7 GV1 . . . C 2 46.16 -17.232 -28.341 0.44 57.6 ? C7 GV1 402 A 1 HETATM 7 C C8 GV1 . . . C 2 42.178 -15.439 -29.991 0.44 56.07 ? C8 GV1 402 A 1 HETATM 8 C C10 GV1 . . . C 2 41.984 -14.972 -24.024 0.44 53.34 ? C10 GV1 402 A 1 HETATM 9 C C1 GV1 . . . C 2 41.278 -15.641 -26.972 0.44 52.99 ? C1 GV1 402 A 1 HETATM 10 C C2 GV1 . . . C 2 42.64 -15.815 -26.408 0.44 51.83 ? C2 GV1 402 A 1 HETATM 11 C C3 GV1 . . . C 2 42.916 -15.505 -25.082 0.44 53.15 ? C3 GV1 402 A 1 HETATM 12 S S1 GV1 . . . C 2 44.649 -15.856 -24.816 0.44 59.16 ? S1 GV1 402 A 1 HETATM 13 N N2 GV1 . . . C 2 46.153 -16.85 -27.007 0.44 59.39 ? N2 GV1 402 A 1 HETATM 14 C C9 GV1 . . . C 2 42.116 -17.919 -30.072 0.44 51.5 ? C9 GV1 402 A 1 HETATM 15 H H1 GV1 . . . C 2 47.078 -17.592 -28.807 0.44 57.82 ? H1 GV1 402 A 1 HETATM 16 H H2 GV1 . . . C 2 41.158 -15.191 -29.644 0.44 55.78 ? H2 GV1 402 A 1 HETATM 17 H H3 GV1 . . . C 2 42.156 -15.419 -31.085 0.44 55.79 ? H3 GV1 402 A 1 HETATM 18 H H4 GV1 . . . C 2 42.788 -14.556 -29.69 0.44 55.8 ? H4 GV1 402 A 1 HETATM 19 H H5 GV1 . . . C 2 41.509 -13.975 -24.18 0.44 53.28 ? H5 GV1 402 A 1 HETATM 20 H H6 GV1 . . . C 2 42.429 -14.824 -23.018 0.44 53.28 ? H6 GV1 402 A 1 HETATM 21 H H7 GV1 . . . C 2 41.089 -15.575 -23.766 0.44 53.28 ? H7 GV1 402 A 1 HETATM 22 H H8 GV1 . . . C 2 41.043 -14.656 -27.397 0.44 52.65 ? H8 GV1 402 A 1 HETATM 23 H H9 GV1 . . . C 2 40.471 -15.797 -26.233 0.44 52.64 ? H9 GV1 402 A 1 HETATM 24 H H10 GV1 . . . C 2 41.019 -16.361 -27.766 0.44 52.66 ? H10 GV1 402 A 1 HETATM 25 H H11 GV1 . . . C 2 41.834 -17.79 -31.143 0.44 52.61 ? H11 GV1 402 A 1 HETATM 26 H H12 GV1 . . . C 2 41.187 -18.172 -29.558 0.44 52.57 ? H12 GV1 402 A 1 HETATM 27 H H13 GV1 . . . C 2 42.752 -18.819 -30.07 0.44 52.61 ? H13 GV1 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #