data_7GSD # _model_server_result.job_id U5icv0VN64TKHtDgLuM3Wg _model_server_result.datetime_utc '2024-11-22 06:47:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7GSD # _exptl.entry_id 7GSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GSD _cell.length_a 90.181 _cell.length_b 90.181 _cell.length_c 107.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 355 n n C C2 TRS sing 356 n n C C3 TRS sing 357 n n C N TRS sing 358 n n C1 O1 TRS sing 359 n n C1 H11 TRS sing 360 n n C1 H12 TRS sing 361 n n C2 O2 TRS sing 362 n n C2 H21 TRS sing 363 n n C2 H22 TRS sing 364 n n C3 O3 TRS sing 365 n n C3 H31 TRS sing 366 n n C3 H32 TRS sing 367 n n N HN1 TRS sing 368 n n N HN2 TRS sing 369 n n N HN3 TRS sing 370 n n O1 HO1 TRS sing 371 n n O2 HO2 TRS sing 372 n n O3 HO3 TRS sing 373 n n # _atom_sites.entry_id 7GSD _atom_sites.fract_transf_matrix[1][1] 0.011089 _atom_sites.fract_transf_matrix[1][2] 0.006402 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 GVY A 1 402 301 GVY LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 696 HOH HOH . D 4 HOH A 4 504 621 HOH HOH . D 4 HOH A 5 505 678 HOH HOH . D 4 HOH A 6 506 566 HOH HOH . D 4 HOH A 7 507 673 HOH HOH . D 4 HOH A 8 508 693 HOH HOH . D 4 HOH A 9 509 464 HOH HOH . D 4 HOH A 10 510 509 HOH HOH . D 4 HOH A 11 511 470 HOH HOH . D 4 HOH A 12 512 634 HOH HOH . D 4 HOH A 13 513 695 HOH HOH . D 4 HOH A 14 514 524 HOH HOH . D 4 HOH A 15 515 482 HOH HOH . D 4 HOH A 16 516 517 HOH HOH . D 4 HOH A 17 517 589 HOH HOH . D 4 HOH A 18 518 419 HOH HOH . D 4 HOH A 19 519 704 HOH HOH . D 4 HOH A 20 520 505 HOH HOH . D 4 HOH A 21 521 423 HOH HOH . D 4 HOH A 22 522 569 HOH HOH . D 4 HOH A 23 523 664 HOH HOH . D 4 HOH A 24 524 497 HOH HOH . D 4 HOH A 25 525 507 HOH HOH . D 4 HOH A 26 526 450 HOH HOH . D 4 HOH A 27 527 685 HOH HOH . D 4 HOH A 28 528 538 HOH HOH . D 4 HOH A 29 529 700 HOH HOH . D 4 HOH A 30 530 421 HOH HOH . D 4 HOH A 31 531 448 HOH HOH . D 4 HOH A 32 532 611 HOH HOH . D 4 HOH A 33 533 689 HOH HOH . D 4 HOH A 34 534 408 HOH HOH . D 4 HOH A 35 535 688 HOH HOH . D 4 HOH A 36 536 427 HOH HOH . D 4 HOH A 37 537 677 HOH HOH . D 4 HOH A 38 538 491 HOH HOH . D 4 HOH A 39 539 434 HOH HOH . D 4 HOH A 40 540 658 HOH HOH . D 4 HOH A 41 541 414 HOH HOH . D 4 HOH A 42 542 461 HOH HOH . D 4 HOH A 43 543 590 HOH HOH . D 4 HOH A 44 544 581 HOH HOH . D 4 HOH A 45 545 587 HOH HOH . D 4 HOH A 46 546 466 HOH HOH . D 4 HOH A 47 547 409 HOH HOH . D 4 HOH A 48 548 405 HOH HOH . D 4 HOH A 49 549 429 HOH HOH . D 4 HOH A 50 550 627 HOH HOH . D 4 HOH A 51 551 528 HOH HOH . D 4 HOH A 52 552 404 HOH HOH . D 4 HOH A 53 553 413 HOH HOH . D 4 HOH A 54 554 666 HOH HOH . D 4 HOH A 55 555 481 HOH HOH . D 4 HOH A 56 556 504 HOH HOH . D 4 HOH A 57 557 449 HOH HOH . D 4 HOH A 58 558 465 HOH HOH . D 4 HOH A 59 559 631 HOH HOH . D 4 HOH A 60 560 407 HOH HOH . D 4 HOH A 61 561 501 HOH HOH . D 4 HOH A 62 562 402 HOH HOH . D 4 HOH A 63 563 549 HOH HOH . D 4 HOH A 64 564 628 HOH HOH . D 4 HOH A 65 565 536 HOH HOH . D 4 HOH A 66 566 676 HOH HOH . D 4 HOH A 67 567 430 HOH HOH . D 4 HOH A 68 568 437 HOH HOH . D 4 HOH A 69 569 431 HOH HOH . D 4 HOH A 70 570 467 HOH HOH . D 4 HOH A 71 571 443 HOH HOH . D 4 HOH A 72 572 493 HOH HOH . D 4 HOH A 73 573 619 HOH HOH . D 4 HOH A 74 574 577 HOH HOH . D 4 HOH A 75 575 503 HOH HOH . D 4 HOH A 76 576 411 HOH HOH . D 4 HOH A 77 577 440 HOH HOH . D 4 HOH A 78 578 633 HOH HOH . D 4 HOH A 79 579 412 HOH HOH . D 4 HOH A 80 580 575 HOH HOH . D 4 HOH A 81 581 460 HOH HOH . D 4 HOH A 82 582 406 HOH HOH . D 4 HOH A 83 583 638 HOH HOH . D 4 HOH A 84 584 441 HOH HOH . D 4 HOH A 85 585 522 HOH HOH . D 4 HOH A 86 586 410 HOH HOH . D 4 HOH A 87 587 435 HOH HOH . D 4 HOH A 88 588 520 HOH HOH . D 4 HOH A 89 589 475 HOH HOH . D 4 HOH A 90 590 479 HOH HOH . D 4 HOH A 91 591 540 HOH HOH . D 4 HOH A 92 592 446 HOH HOH . D 4 HOH A 93 593 699 HOH HOH . D 4 HOH A 94 594 415 HOH HOH . D 4 HOH A 95 595 594 HOH HOH . D 4 HOH A 96 596 463 HOH HOH . D 4 HOH A 97 597 533 HOH HOH . D 4 HOH A 98 598 417 HOH HOH . D 4 HOH A 99 599 625 HOH HOH . D 4 HOH A 100 600 635 HOH HOH . D 4 HOH A 101 601 468 HOH HOH . D 4 HOH A 102 602 403 HOH HOH . D 4 HOH A 103 603 438 HOH HOH . D 4 HOH A 104 604 580 HOH HOH . D 4 HOH A 105 605 563 HOH HOH . D 4 HOH A 106 606 496 HOH HOH . D 4 HOH A 107 607 672 HOH HOH . D 4 HOH A 108 608 556 HOH HOH . D 4 HOH A 109 609 444 HOH HOH . D 4 HOH A 110 610 426 HOH HOH . D 4 HOH A 111 611 489 HOH HOH . D 4 HOH A 112 612 418 HOH HOH . D 4 HOH A 113 613 424 HOH HOH . D 4 HOH A 114 614 526 HOH HOH . D 4 HOH A 115 615 636 HOH HOH . D 4 HOH A 116 616 447 HOH HOH . D 4 HOH A 117 617 486 HOH HOH . D 4 HOH A 118 618 559 HOH HOH . D 4 HOH A 119 619 543 HOH HOH . D 4 HOH A 120 620 660 HOH HOH . D 4 HOH A 121 621 703 HOH HOH . D 4 HOH A 122 622 698 HOH HOH . D 4 HOH A 123 623 668 HOH HOH . D 4 HOH A 124 624 455 HOH HOH . D 4 HOH A 125 625 602 HOH HOH . D 4 HOH A 126 626 530 HOH HOH . D 4 HOH A 127 627 560 HOH HOH . D 4 HOH A 128 628 416 HOH HOH . D 4 HOH A 129 629 614 HOH HOH . D 4 HOH A 130 630 554 HOH HOH . D 4 HOH A 131 631 513 HOH HOH . D 4 HOH A 132 632 451 HOH HOH . D 4 HOH A 133 633 459 HOH HOH . D 4 HOH A 134 634 474 HOH HOH . D 4 HOH A 135 635 657 HOH HOH . D 4 HOH A 136 636 562 HOH HOH . D 4 HOH A 137 637 420 HOH HOH . D 4 HOH A 138 638 618 HOH HOH . D 4 HOH A 139 639 519 HOH HOH . D 4 HOH A 140 640 521 HOH HOH . D 4 HOH A 141 641 546 HOH HOH . D 4 HOH A 142 642 439 HOH HOH . D 4 HOH A 143 643 553 HOH HOH . D 4 HOH A 144 644 484 HOH HOH . D 4 HOH A 145 645 472 HOH HOH . D 4 HOH A 146 646 477 HOH HOH . D 4 HOH A 147 647 675 HOH HOH . D 4 HOH A 148 648 648 HOH HOH . D 4 HOH A 149 649 561 HOH HOH . D 4 HOH A 150 650 669 HOH HOH . D 4 HOH A 151 651 527 HOH HOH . D 4 HOH A 152 652 653 HOH HOH . D 4 HOH A 153 653 616 HOH HOH . D 4 HOH A 154 654 454 HOH HOH . D 4 HOH A 155 655 539 HOH HOH . D 4 HOH A 156 656 697 HOH HOH . D 4 HOH A 157 657 662 HOH HOH . D 4 HOH A 158 658 422 HOH HOH . D 4 HOH A 159 659 458 HOH HOH . D 4 HOH A 160 660 702 HOH HOH . D 4 HOH A 161 661 492 HOH HOH . D 4 HOH A 162 662 535 HOH HOH . D 4 HOH A 163 663 456 HOH HOH . D 4 HOH A 164 664 490 HOH HOH . D 4 HOH A 165 665 567 HOH HOH . D 4 HOH A 166 666 514 HOH HOH . D 4 HOH A 167 667 684 HOH HOH . D 4 HOH A 168 668 552 HOH HOH . D 4 HOH A 169 669 457 HOH HOH . D 4 HOH A 170 670 442 HOH HOH . D 4 HOH A 171 671 506 HOH HOH . D 4 HOH A 172 672 469 HOH HOH . D 4 HOH A 173 673 510 HOH HOH . D 4 HOH A 174 674 478 HOH HOH . D 4 HOH A 175 675 665 HOH HOH . D 4 HOH A 176 676 488 HOH HOH . D 4 HOH A 177 677 551 HOH HOH . D 4 HOH A 178 678 498 HOH HOH . D 4 HOH A 179 679 502 HOH HOH . D 4 HOH A 180 680 624 HOH HOH . D 4 HOH A 181 681 432 HOH HOH . D 4 HOH A 182 682 476 HOH HOH . D 4 HOH A 183 683 637 HOH HOH . D 4 HOH A 184 684 687 HOH HOH . D 4 HOH A 185 685 659 HOH HOH . D 4 HOH A 186 686 555 HOH HOH . D 4 HOH A 187 687 647 HOH HOH . D 4 HOH A 188 688 523 HOH HOH . D 4 HOH A 189 689 597 HOH HOH . D 4 HOH A 190 690 679 HOH HOH . D 4 HOH A 191 691 598 HOH HOH . D 4 HOH A 192 692 565 HOH HOH . D 4 HOH A 193 693 652 HOH HOH . D 4 HOH A 194 694 541 HOH HOH . D 4 HOH A 195 695 656 HOH HOH . D 4 HOH A 196 696 632 HOH HOH . D 4 HOH A 197 697 694 HOH HOH . D 4 HOH A 198 698 654 HOH HOH . D 4 HOH A 199 699 542 HOH HOH . D 4 HOH A 200 700 701 HOH HOH . D 4 HOH A 201 701 646 HOH HOH . D 4 HOH A 202 702 433 HOH HOH . D 4 HOH A 203 703 483 HOH HOH . D 4 HOH A 204 704 453 HOH HOH . D 4 HOH A 205 705 529 HOH HOH . D 4 HOH A 206 706 683 HOH HOH . D 4 HOH A 207 707 487 HOH HOH . D 4 HOH A 208 708 690 HOH HOH . D 4 HOH A 209 709 579 HOH HOH . D 4 HOH A 210 710 630 HOH HOH . D 4 HOH A 211 711 674 HOH HOH . D 4 HOH A 212 712 595 HOH HOH . D 4 HOH A 213 713 617 HOH HOH . D 4 HOH A 214 714 574 HOH HOH . D 4 HOH A 215 715 462 HOH HOH . D 4 HOH A 216 716 663 HOH HOH . D 4 HOH A 217 717 670 HOH HOH . D 4 HOH A 218 718 661 HOH HOH . D 4 HOH A 219 719 525 HOH HOH . D 4 HOH A 220 720 645 HOH HOH . D 4 HOH A 221 721 471 HOH HOH . D 4 HOH A 222 722 650 HOH HOH . D 4 HOH A 223 723 512 HOH HOH . D 4 HOH A 224 724 649 HOH HOH . D 4 HOH A 225 725 651 HOH HOH . D 4 HOH A 226 726 686 HOH HOH . D 4 HOH A 227 727 548 HOH HOH . D 4 HOH A 228 728 639 HOH HOH . D 4 HOH A 229 729 608 HOH HOH . D 4 HOH A 230 730 681 HOH HOH . D 4 HOH A 231 731 606 HOH HOH . D 4 HOH A 232 732 671 HOH HOH . D 4 HOH A 233 733 655 HOH HOH . D 4 HOH A 234 734 596 HOH HOH . D 4 HOH A 235 735 518 HOH HOH . D 4 HOH A 236 736 473 HOH HOH . D 4 HOH A 237 737 578 HOH HOH . D 4 HOH A 238 738 667 HOH HOH . D 4 HOH A 239 739 682 HOH HOH . D 4 HOH A 240 740 644 HOH HOH . D 4 HOH A 241 741 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 22.086 -40.479 -22.867 1 58.57 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 22.156 -39.5 -21.683 1 64.04 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 21.512 -39.847 -24.144 1 60.78 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 21.243 -41.663 -22.483 1 38.38 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 23.458 -41.059 -23.158 1 49.32 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 23.456 -38.913 -21.526 1 63.46 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 21.278 -38.453 -24.028 1 74.77 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 21.699 -42.294 -21.245 1 36.05 ? O3 TRS 401 A 1 HETATM 9 H H11 TRS . . . B 2 21.927 -39.98 -20.86 1 62.23 ? H11 TRS 401 A 1 HETATM 10 H H12 TRS . . . B 2 21.495 -38.79 -21.806 1 62.53 ? H12 TRS 401 A 1 HETATM 11 H H21 TRS . . . B 2 20.675 -40.297 -24.38 1 63.18 ? H21 TRS 401 A 1 HETATM 12 H H22 TRS . . . B 2 22.149 -39.991 -24.873 1 63.25 ? H22 TRS 401 A 1 HETATM 13 H H31 TRS . . . B 2 21.262 -42.32 -23.21 1 41.87 ? H31 TRS 401 A 1 HETATM 14 H H32 TRS . . . B 2 20.317 -41.368 -22.37 1 41.89 ? H32 TRS 401 A 1 HETATM 15 H HN1 TRS . . . B 2 23.405 -41.935 -23.397 1 51.92 ? HN1 TRS 401 A 1 HETATM 16 H HN2 TRS . . . B 2 23.988 -40.999 -22.422 1 51.99 ? HN2 TRS 401 A 1 HETATM 17 H HN3 TRS . . . B 2 23.868 -40.608 -23.833 1 52.11 ? HN3 TRS 401 A 1 HETATM 18 H HO1 TRS . . . B 2 23.558 -38.242 -20.744 1 37.47 ? HO1 TRS 401 A 1 HETATM 19 H HO2 TRS . . . B 2 21.749 -37.754 -24.471 1 43.14 ? HO2 TRS 401 A 1 HETATM 20 H HO3 TRS . . . B 2 22.55 -42.327 -21.24 1 37.08 ? HO3 TRS 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #