data_7GSN # _model_server_result.job_id 51AY89bguhcFDIyxibB7iQ _model_server_result.datetime_utc '2024-11-22 06:39:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GSN # _exptl.entry_id 7GSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.272 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(thiophen-2-yl)methyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GSN _cell.length_a 89.81 _cell.length_b 89.81 _cell.length_c 106.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 O2 S' _chem_comp.formula_weight 218.272 _chem_comp.id R7T _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(thiophen-2-yl)methyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C12 R7T sing 277 n y S C9 R7T sing 278 n y C8 C9 R7T sing 279 n n C8 C1 R7T sing 280 n n C12 C11 R7T doub 281 n y C9 C10 R7T doub 282 n y C1 C6 R7T doub 283 n y C1 C2 R7T sing 284 n y C6 C5 R7T sing 285 n y C11 C10 R7T sing 286 n y C2 C3 R7T doub 287 n y C5 C4 R7T doub 288 n y C3 C4 R7T sing 289 n y C4 C7 R7T sing 290 n n C7 O2 R7T doub 291 n n C7 O1 R7T sing 292 n n O1 H1 R7T sing 293 n n C5 H2 R7T sing 294 n n C6 H3 R7T sing 295 n n C3 H4 R7T sing 296 n n C2 H5 R7T sing 297 n n C8 H6 R7T sing 298 n n C8 H7 R7T sing 299 n n C12 H8 R7T sing 300 n n C11 H9 R7T sing 301 n n C10 H10 R7T sing 302 n n # _atom_sites.entry_id 7GSN _atom_sites.fract_transf_matrix[1][1] 0.011135 _atom_sites.fract_transf_matrix[1][2] 0.006429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 R7T A 1 402 301 R7T LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 696 HOH HOH . D 4 HOH A 4 504 678 HOH HOH . D 4 HOH A 5 505 621 HOH HOH . D 4 HOH A 6 506 673 HOH HOH . D 4 HOH A 7 507 482 HOH HOH . D 4 HOH A 8 508 566 HOH HOH . D 4 HOH A 9 509 569 HOH HOH . D 4 HOH A 10 510 589 HOH HOH . D 4 HOH A 11 511 421 HOH HOH . D 4 HOH A 12 512 419 HOH HOH . D 4 HOH A 13 513 689 HOH HOH . D 4 HOH A 14 514 491 HOH HOH . D 4 HOH A 15 515 464 HOH HOH . D 4 HOH A 16 516 448 HOH HOH . D 4 HOH A 17 517 423 HOH HOH . D 4 HOH A 18 518 628 HOH HOH . D 4 HOH A 19 519 501 HOH HOH . D 4 HOH A 20 520 664 HOH HOH . D 4 HOH A 21 521 461 HOH HOH . D 4 HOH A 22 522 517 HOH HOH . D 4 HOH A 23 523 627 HOH HOH . D 4 HOH A 24 524 634 HOH HOH . D 4 HOH A 25 525 590 HOH HOH . D 4 HOH A 26 526 685 HOH HOH . D 4 HOH A 27 527 470 HOH HOH . D 4 HOH A 28 528 688 HOH HOH . D 4 HOH A 29 529 507 HOH HOH . D 4 HOH A 30 530 402 HOH HOH . D 4 HOH A 31 531 695 HOH HOH . D 4 HOH A 32 532 539 HOH HOH . D 4 HOH A 33 533 611 HOH HOH . D 4 HOH A 34 534 406 HOH HOH . D 4 HOH A 35 535 536 HOH HOH . D 4 HOH A 36 536 524 HOH HOH . D 4 HOH A 37 537 443 HOH HOH . D 4 HOH A 38 538 493 HOH HOH . D 4 HOH A 39 539 481 HOH HOH . D 4 HOH A 40 540 704 HOH HOH . D 4 HOH A 41 541 466 HOH HOH . D 4 HOH A 42 542 497 HOH HOH . D 4 HOH A 43 543 698 HOH HOH . D 4 HOH A 44 544 577 HOH HOH . D 4 HOH A 45 545 417 HOH HOH . D 4 HOH A 46 546 666 HOH HOH . D 4 HOH A 47 547 404 HOH HOH . D 4 HOH A 48 548 587 HOH HOH . D 4 HOH A 49 549 452 HOH HOH . D 4 HOH A 50 550 556 HOH HOH . D 4 HOH A 51 551 658 HOH HOH . D 4 HOH A 52 552 479 HOH HOH . D 4 HOH A 53 553 625 HOH HOH . D 4 HOH A 54 554 405 HOH HOH . D 4 HOH A 55 555 509 HOH HOH . D 4 HOH A 56 556 450 HOH HOH . D 4 HOH A 57 557 435 HOH HOH . D 4 HOH A 58 558 693 HOH HOH . D 4 HOH A 59 559 465 HOH HOH . D 4 HOH A 60 560 538 HOH HOH . D 4 HOH A 61 561 660 HOH HOH . D 4 HOH A 62 562 441 HOH HOH . D 4 HOH A 63 563 436 HOH HOH . D 4 HOH A 64 564 431 HOH HOH . D 4 HOH A 65 565 496 HOH HOH . D 4 HOH A 66 566 540 HOH HOH . D 4 HOH A 67 567 426 HOH HOH . D 4 HOH A 68 568 414 HOH HOH . D 4 HOH A 69 569 407 HOH HOH . D 4 HOH A 70 570 619 HOH HOH . D 4 HOH A 71 571 411 HOH HOH . D 4 HOH A 72 572 460 HOH HOH . D 4 HOH A 73 573 429 HOH HOH . D 4 HOH A 74 574 409 HOH HOH . D 4 HOH A 75 575 631 HOH HOH . D 4 HOH A 76 576 427 HOH HOH . D 4 HOH A 77 577 580 HOH HOH . D 4 HOH A 78 578 449 HOH HOH . D 4 HOH A 79 579 683 HOH HOH . D 4 HOH A 80 580 552 HOH HOH . D 4 HOH A 81 581 413 HOH HOH . D 4 HOH A 82 582 519 HOH HOH . D 4 HOH A 83 583 447 HOH HOH . D 4 HOH A 84 584 504 HOH HOH . D 4 HOH A 85 585 559 HOH HOH . D 4 HOH A 86 586 408 HOH HOH . D 4 HOH A 87 587 676 HOH HOH . D 4 HOH A 88 588 703 HOH HOH . D 4 HOH A 89 589 434 HOH HOH . D 4 HOH A 90 590 486 HOH HOH . D 4 HOH A 91 591 635 HOH HOH . D 4 HOH A 92 592 533 HOH HOH . D 4 HOH A 93 593 412 HOH HOH . D 4 HOH A 94 594 636 HOH HOH . D 4 HOH A 95 595 430 HOH HOH . D 4 HOH A 96 596 440 HOH HOH . D 4 HOH A 97 597 468 HOH HOH . D 4 HOH A 98 598 410 HOH HOH . D 4 HOH A 99 599 444 HOH HOH . D 4 HOH A 100 600 528 HOH HOH . D 4 HOH A 101 601 549 HOH HOH . D 4 HOH A 102 602 503 HOH HOH . D 4 HOH A 103 603 467 HOH HOH . D 4 HOH A 104 604 530 HOH HOH . D 4 HOH A 105 605 475 HOH HOH . D 4 HOH A 106 606 415 HOH HOH . D 4 HOH A 107 607 403 HOH HOH . D 4 HOH A 108 608 697 HOH HOH . D 4 HOH A 109 609 581 HOH HOH . D 4 HOH A 110 610 437 HOH HOH . D 4 HOH A 111 611 446 HOH HOH . D 4 HOH A 112 612 554 HOH HOH . D 4 HOH A 113 613 522 HOH HOH . D 4 HOH A 114 614 527 HOH HOH . D 4 HOH A 115 615 513 HOH HOH . D 4 HOH A 116 616 418 HOH HOH . D 4 HOH A 117 617 575 HOH HOH . D 4 HOH A 118 618 416 HOH HOH . D 4 HOH A 119 619 520 HOH HOH . D 4 HOH A 120 620 489 HOH HOH . D 4 HOH A 121 621 677 HOH HOH . D 4 HOH A 122 622 632 HOH HOH . D 4 HOH A 123 623 459 HOH HOH . D 4 HOH A 124 624 616 HOH HOH . D 4 HOH A 125 625 561 HOH HOH . D 4 HOH A 126 626 602 HOH HOH . D 4 HOH A 127 627 456 HOH HOH . D 4 HOH A 128 628 521 HOH HOH . D 4 HOH A 129 629 526 HOH HOH . D 4 HOH A 130 630 700 HOH HOH . D 4 HOH A 131 631 451 HOH HOH . D 4 HOH A 132 632 420 HOH HOH . D 4 HOH A 133 633 424 HOH HOH . D 4 HOH A 134 634 439 HOH HOH . D 4 HOH A 135 635 484 HOH HOH . D 4 HOH A 136 636 638 HOH HOH . D 4 HOH A 137 637 463 HOH HOH . D 4 HOH A 138 638 488 HOH HOH . D 4 HOH A 139 639 668 HOH HOH . D 4 HOH A 140 640 657 HOH HOH . D 4 HOH A 141 641 438 HOH HOH . D 4 HOH A 142 642 654 HOH HOH . D 4 HOH A 143 643 474 HOH HOH . D 4 HOH A 144 644 690 HOH HOH . D 4 HOH A 145 645 672 HOH HOH . D 4 HOH A 146 646 562 HOH HOH . D 4 HOH A 147 647 699 HOH HOH . D 4 HOH A 148 648 546 HOH HOH . D 4 HOH A 149 649 553 HOH HOH . D 4 HOH A 150 650 455 HOH HOH . D 4 HOH A 151 651 605 HOH HOH . D 4 HOH A 152 652 442 HOH HOH . D 4 HOH A 153 653 477 HOH HOH . D 4 HOH A 154 654 492 HOH HOH . D 4 HOH A 155 655 422 HOH HOH . D 4 HOH A 156 656 454 HOH HOH . D 4 HOH A 157 657 535 HOH HOH . D 4 HOH A 158 658 563 HOH HOH . D 4 HOH A 159 659 543 HOH HOH . D 4 HOH A 160 660 457 HOH HOH . D 4 HOH A 161 661 510 HOH HOH . D 4 HOH A 162 662 560 HOH HOH . D 4 HOH A 163 663 633 HOH HOH . D 4 HOH A 164 664 506 HOH HOH . D 4 HOH A 165 665 458 HOH HOH . D 4 HOH A 166 666 472 HOH HOH . D 4 HOH A 167 667 646 HOH HOH . D 4 HOH A 168 668 478 HOH HOH . D 4 HOH A 169 669 669 HOH HOH . D 4 HOH A 170 670 551 HOH HOH . D 4 HOH A 171 671 505 HOH HOH . D 4 HOH A 172 672 702 HOH HOH . D 4 HOH A 173 673 661 HOH HOH . D 4 HOH A 174 674 498 HOH HOH . D 4 HOH A 175 675 648 HOH HOH . D 4 HOH A 176 676 476 HOH HOH . D 4 HOH A 177 677 624 HOH HOH . D 4 HOH A 178 678 432 HOH HOH . D 4 HOH A 179 679 684 HOH HOH . D 4 HOH A 180 680 659 HOH HOH . D 4 HOH A 181 681 694 HOH HOH . D 4 HOH A 182 682 514 HOH HOH . D 4 HOH A 183 683 542 HOH HOH . D 4 HOH A 184 684 565 HOH HOH . D 4 HOH A 185 685 490 HOH HOH . D 4 HOH A 186 686 523 HOH HOH . D 4 HOH A 187 687 618 HOH HOH . D 4 HOH A 188 688 469 HOH HOH . D 4 HOH A 189 689 594 HOH HOH . D 4 HOH A 190 690 675 HOH HOH . D 4 HOH A 191 691 483 HOH HOH . D 4 HOH A 192 692 567 HOH HOH . D 4 HOH A 193 693 637 HOH HOH . D 4 HOH A 194 694 656 HOH HOH . D 4 HOH A 195 695 555 HOH HOH . D 4 HOH A 196 696 665 HOH HOH . D 4 HOH A 197 697 597 HOH HOH . D 4 HOH A 198 698 687 HOH HOH . D 4 HOH A 199 699 701 HOH HOH . D 4 HOH A 200 700 647 HOH HOH . D 4 HOH A 201 701 653 HOH HOH . D 4 HOH A 202 702 453 HOH HOH . D 4 HOH A 203 703 487 HOH HOH . D 4 HOH A 204 704 617 HOH HOH . D 4 HOH A 205 705 662 HOH HOH . D 4 HOH A 206 706 541 HOH HOH . D 4 HOH A 207 707 579 HOH HOH . D 4 HOH A 208 708 433 HOH HOH . D 4 HOH A 209 709 614 HOH HOH . D 4 HOH A 210 710 679 HOH HOH . D 4 HOH A 211 711 574 HOH HOH . D 4 HOH A 212 712 674 HOH HOH . D 4 HOH A 213 713 529 HOH HOH . D 4 HOH A 214 714 595 HOH HOH . D 4 HOH A 215 715 630 HOH HOH . D 4 HOH A 216 716 682 HOH HOH . D 4 HOH A 217 717 650 HOH HOH . D 4 HOH A 218 718 655 HOH HOH . D 4 HOH A 219 719 462 HOH HOH . D 4 HOH A 220 720 670 HOH HOH . D 4 HOH A 221 721 651 HOH HOH . D 4 HOH A 222 722 598 HOH HOH . D 4 HOH A 223 723 663 HOH HOH . D 4 HOH A 224 724 608 HOH HOH . D 4 HOH A 225 725 649 HOH HOH . D 4 HOH A 226 726 548 HOH HOH . D 4 HOH A 227 727 639 HOH HOH . D 4 HOH A 228 728 606 HOH HOH . D 4 HOH A 229 729 681 HOH HOH . D 4 HOH A 230 730 642 HOH HOH . D 4 HOH A 231 731 645 HOH HOH . D 4 HOH A 232 732 471 HOH HOH . D 4 HOH A 233 733 512 HOH HOH . D 4 HOH A 234 734 525 HOH HOH . D 4 HOH A 235 735 686 HOH HOH . D 4 HOH A 236 736 671 HOH HOH . D 4 HOH A 237 737 518 HOH HOH . D 4 HOH A 238 738 596 HOH HOH . D 4 HOH A 239 739 473 HOH HOH . D 4 HOH A 240 740 680 HOH HOH . D 4 HOH A 241 741 643 HOH HOH . D 4 HOH A 242 742 578 HOH HOH . D 4 HOH A 243 743 667 HOH HOH . D 4 HOH A 244 744 644 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 R7T . . . C 3 27.531 -8.611 -25.595 0.48 58.23 ? O1 R7T 402 A 1 HETATM 2 C C7 R7T . . . C 3 28.057 -7.909 -26.487 0.48 53.36 ? C7 R7T 402 A 1 HETATM 3 O O2 R7T . . . C 3 27.671 -6.719 -26.644 0.48 57.96 -1 O2 R7T 402 A 1 HETATM 4 C C4 R7T . . . C 3 29.133 -8.52 -27.38 0.48 52.8 ? C4 R7T 402 A 1 HETATM 5 C C5 R7T . . . C 3 29.453 -7.878 -28.568 0.48 50.88 ? C5 R7T 402 A 1 HETATM 6 C C6 R7T . . . C 3 30.421 -8.42 -29.399 0.48 50.3 ? C6 R7T 402 A 1 HETATM 7 C C3 R7T . . . C 3 29.785 -9.707 -27.021 0.48 48.89 ? C3 R7T 402 A 1 HETATM 8 C C2 R7T . . . C 3 30.753 -10.244 -27.86 0.48 49.4 ? C2 R7T 402 A 1 HETATM 9 C C1 R7T . . . C 3 31.071 -9.593 -29.053 0.48 50.5 ? C1 R7T 402 A 1 HETATM 10 C C8 R7T . . . C 3 32.118 -10.084 -30.052 0.48 53.15 ? C8 R7T 402 A 1 HETATM 11 C C9 R7T . . . C 3 32.671 -11.486 -29.782 0.48 53.84 ? C9 R7T 402 A 1 HETATM 12 S S R7T . . . C 3 33.708 -11.99 -28.497 0.48 58.52 ? S R7T 402 A 1 HETATM 13 C C12 R7T . . . C 3 33.856 -13.636 -28.963 0.48 48.92 ? C12 R7T 402 A 1 HETATM 14 C C11 R7T . . . C 3 33.101 -13.762 -30.108 0.48 46.19 ? C11 R7T 402 A 1 HETATM 15 C C10 R7T . . . C 3 32.467 -12.62 -30.553 0.48 49.18 ? C10 R7T 402 A 1 HETATM 16 H H2 R7T . . . C 3 28.95 -6.96 -28.851 0.48 51.14 ? H2 R7T 402 A 1 HETATM 17 H H3 R7T . . . C 3 30.674 -7.919 -30.327 0.48 50.5 ? H3 R7T 402 A 1 HETATM 18 H H4 R7T . . . C 3 29.533 -10.213 -26.095 0.48 50 ? H4 R7T 402 A 1 HETATM 19 H H5 R7T . . . C 3 31.248 -11.163 -27.571 0.48 49.69 ? H5 R7T 402 A 1 HETATM 20 H H6 R7T . . . C 3 32.956 -9.378 -30.046 0.48 52.65 ? H6 R7T 402 A 1 HETATM 21 H H7 R7T . . . C 3 31.669 -10.078 -31.052 0.48 52.65 ? H7 R7T 402 A 1 HETATM 22 H H8 R7T . . . C 3 34.416 -14.415 -28.457 0.48 50.36 ? H8 R7T 402 A 1 HETATM 23 H H9 R7T . . . C 3 33.003 -14.709 -30.626 0.48 47.76 ? H9 R7T 402 A 1 HETATM 24 H H10 R7T . . . C 3 31.851 -12.611 -31.447 0.48 49.6 ? H10 R7T 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #