data_7GSP
#
_model_server_result.job_id            I8Ob_SxgvGreWdyLyUECSg 
_model_server_result.datetime_utc      '2024-11-25 00:48:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gsp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":107}' 
#
_entry.id    7GSP 
#
_exptl.entry_id    7GSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              361.271 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7GSP 
_cell.length_a            58.5 
_cell.length_b            58.5 
_cell.length_c            133.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 10 B CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P S' 
_chem_comp.formula_weight    361.271 
_chem_comp.id                SGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P S1P SGP doub 275 n n 
P O1P SGP sing 276 n n 
P O3' SGP sing 277 n n 
P O2' SGP sing 278 n n 
O1P HOP1 SGP sing 279 n n 
O5' C5' SGP sing 280 n n 
O5' HO5' SGP sing 281 n n 
C5' C4' SGP sing 282 n n 
C5' "H5'1" SGP sing 283 n n 
C5' "H5'2" SGP sing 284 n n 
C4' O4' SGP sing 285 n n 
C4' C3' SGP sing 286 n n 
C4' H4' SGP sing 287 n n 
O4' C1' SGP sing 288 n n 
C3' O3' SGP sing 289 n n 
C3' C2' SGP sing 290 n n 
C3' H3' SGP sing 291 n n 
C2' O2' SGP sing 292 n n 
C2' C1' SGP sing 293 n n 
C2' H2' SGP sing 294 n n 
C1' N9 SGP sing 295 n n 
C1' H1' SGP sing 296 n n 
N9 C8 SGP sing 297 n y 
N9 C4 SGP sing 298 n y 
C8 N7 SGP doub 299 n y 
C8 H8 SGP sing 300 n n 
N7 C5 SGP sing 301 n y 
C5 C6 SGP sing 302 n n 
C5 C4 SGP doub 303 n y 
C6 O6 SGP doub 304 n n 
C6 N1 SGP sing 305 n n 
N1 C2 SGP sing 306 n n 
N1 HN1 SGP sing 307 n n 
C2 N2 SGP sing 308 n n 
C2 N3 SGP doub 309 n n 
N2 HN21 SGP sing 310 n n 
N2 HN22 SGP sing 311 n n 
N3 C4 SGP sing 312 n n 
#
_atom_sites.entry_id                     7GSP 
_atom_sites.fract_transf_matrix[1][1]    0.017094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 105 105 PO4 PO4 . 
D 3 SGP A 1 107 107 SGP SGP . 
E 2 PO4 B 1 106 106 PO4 PO4 . 
F 3 SGP B 1 108 108 SGP SGP . 
G 4 HOH A 1 111 111 HOH HOH . 
G 4 HOH A 2 112 112 HOH HOH . 
G 4 HOH A 3 116 116 HOH HOH . 
G 4 HOH A 4 119 119 HOH HOH . 
G 4 HOH A 5 120 120 HOH HOH . 
G 4 HOH A 6 123 123 HOH HOH . 
G 4 HOH A 7 125 125 HOH HOH . 
G 4 HOH A 8 126 126 HOH HOH . 
G 4 HOH A 9 127 127 HOH HOH . 
G 4 HOH A 10 128 128 HOH HOH . 
G 4 HOH A 11 129 129 HOH HOH . 
G 4 HOH A 12 133 133 HOH HOH . 
G 4 HOH A 13 134 134 HOH HOH . 
G 4 HOH A 14 135 135 HOH HOH . 
G 4 HOH A 15 136 136 HOH HOH . 
G 4 HOH A 16 139 139 HOH HOH . 
G 4 HOH A 17 140 140 HOH HOH . 
G 4 HOH A 18 144 144 HOH HOH . 
G 4 HOH A 19 145 145 HOH HOH . 
G 4 HOH A 20 146 146 HOH HOH . 
G 4 HOH A 21 147 147 HOH HOH . 
G 4 HOH A 22 149 149 HOH HOH . 
G 4 HOH A 23 151 151 HOH HOH . 
G 4 HOH A 24 152 152 HOH HOH . 
G 4 HOH A 25 153 153 HOH HOH . 
G 4 HOH A 26 155 155 HOH HOH . 
G 4 HOH A 27 156 156 HOH HOH . 
G 4 HOH A 28 157 157 HOH HOH . 
G 4 HOH A 29 158 158 HOH HOH . 
G 4 HOH A 30 159 159 HOH HOH . 
G 4 HOH A 31 160 160 HOH HOH . 
G 4 HOH A 32 161 161 HOH HOH . 
G 4 HOH A 33 162 162 HOH HOH . 
G 4 HOH A 34 163 163 HOH HOH . 
G 4 HOH A 35 166 166 HOH HOH . 
G 4 HOH A 36 167 167 HOH HOH . 
G 4 HOH A 37 169 169 HOH HOH . 
G 4 HOH A 38 171 171 HOH HOH . 
G 4 HOH A 39 172 172 HOH HOH . 
G 4 HOH A 40 174 174 HOH HOH . 
G 4 HOH A 41 175 175 HOH HOH . 
G 4 HOH A 42 176 176 HOH HOH . 
G 4 HOH A 43 179 179 HOH HOH . 
G 4 HOH A 44 180 180 HOH HOH . 
G 4 HOH A 45 182 182 HOH HOH . 
G 4 HOH A 46 183 183 HOH HOH . 
G 4 HOH A 47 187 187 HOH HOH . 
G 4 HOH A 48 188 188 HOH HOH . 
G 4 HOH A 49 190 190 HOH HOH . 
G 4 HOH A 50 191 191 HOH HOH . 
G 4 HOH A 51 192 192 HOH HOH . 
G 4 HOH A 52 193 193 HOH HOH . 
G 4 HOH A 53 196 196 HOH HOH . 
G 4 HOH A 54 200 200 HOH HOH . 
G 4 HOH A 55 205 205 HOH HOH . 
G 4 HOH A 56 208 208 HOH HOH . 
G 4 HOH A 57 210 210 HOH HOH . 
G 4 HOH A 58 211 211 HOH HOH . 
G 4 HOH A 59 212 212 HOH HOH . 
G 4 HOH A 60 214 214 HOH HOH . 
G 4 HOH A 61 215 215 HOH HOH . 
G 4 HOH A 62 217 217 HOH HOH . 
G 4 HOH A 63 218 218 HOH HOH . 
G 4 HOH A 64 219 219 HOH HOH . 
G 4 HOH A 65 221 221 HOH HOH . 
G 4 HOH A 66 222 222 HOH HOH . 
G 4 HOH A 67 224 224 HOH HOH . 
G 4 HOH A 68 226 226 HOH HOH . 
G 4 HOH A 69 229 229 HOH HOH . 
G 4 HOH A 70 230 230 HOH HOH . 
G 4 HOH A 71 231 231 HOH HOH . 
G 4 HOH A 72 233 233 HOH HOH . 
G 4 HOH A 73 234 234 HOH HOH . 
G 4 HOH A 74 235 235 HOH HOH . 
G 4 HOH A 75 237 237 HOH HOH . 
G 4 HOH A 76 240 240 HOH HOH . 
G 4 HOH A 77 241 241 HOH HOH . 
G 4 HOH A 78 246 246 HOH HOH . 
G 4 HOH A 79 247 247 HOH HOH . 
H 4 HOH B 1 109 109 HOH HOH . 
H 4 HOH B 2 110 110 HOH HOH . 
H 4 HOH B 3 113 113 HOH HOH . 
H 4 HOH B 4 114 114 HOH HOH . 
H 4 HOH B 5 115 115 HOH HOH . 
H 4 HOH B 6 117 117 HOH HOH . 
H 4 HOH B 7 118 118 HOH HOH . 
H 4 HOH B 8 121 121 HOH HOH . 
H 4 HOH B 9 122 122 HOH HOH . 
H 4 HOH B 10 124 124 HOH HOH . 
H 4 HOH B 11 130 130 HOH HOH . 
H 4 HOH B 12 131 131 HOH HOH . 
H 4 HOH B 13 132 132 HOH HOH . 
H 4 HOH B 14 137 137 HOH HOH . 
H 4 HOH B 15 138 138 HOH HOH . 
H 4 HOH B 16 141 141 HOH HOH . 
H 4 HOH B 17 142 142 HOH HOH . 
H 4 HOH B 18 143 143 HOH HOH . 
H 4 HOH B 19 148 148 HOH HOH . 
H 4 HOH B 20 150 150 HOH HOH . 
H 4 HOH B 21 154 154 HOH HOH . 
H 4 HOH B 22 164 164 HOH HOH . 
H 4 HOH B 23 165 165 HOH HOH . 
H 4 HOH B 24 168 168 HOH HOH . 
H 4 HOH B 25 170 170 HOH HOH . 
H 4 HOH B 26 173 173 HOH HOH . 
H 4 HOH B 27 177 177 HOH HOH . 
H 4 HOH B 28 178 178 HOH HOH . 
H 4 HOH B 29 181 181 HOH HOH . 
H 4 HOH B 30 184 184 HOH HOH . 
H 4 HOH B 31 185 185 HOH HOH . 
H 4 HOH B 32 186 186 HOH HOH . 
H 4 HOH B 33 189 189 HOH HOH . 
H 4 HOH B 34 194 194 HOH HOH . 
H 4 HOH B 35 195 195 HOH HOH . 
H 4 HOH B 36 197 197 HOH HOH . 
H 4 HOH B 37 198 198 HOH HOH . 
H 4 HOH B 38 199 199 HOH HOH . 
H 4 HOH B 39 201 201 HOH HOH . 
H 4 HOH B 40 202 202 HOH HOH . 
H 4 HOH B 41 203 203 HOH HOH . 
H 4 HOH B 42 204 204 HOH HOH . 
H 4 HOH B 43 206 206 HOH HOH . 
H 4 HOH B 44 207 207 HOH HOH . 
H 4 HOH B 45 209 209 HOH HOH . 
H 4 HOH B 46 213 213 HOH HOH . 
H 4 HOH B 47 216 216 HOH HOH . 
H 4 HOH B 48 220 220 HOH HOH . 
H 4 HOH B 49 223 223 HOH HOH . 
H 4 HOH B 50 225 225 HOH HOH . 
H 4 HOH B 51 227 227 HOH HOH . 
H 4 HOH B 52 228 228 HOH HOH . 
H 4 HOH B 53 232 232 HOH HOH . 
H 4 HOH B 54 236 236 HOH HOH . 
H 4 HOH B 55 238 238 HOH HOH . 
H 4 HOH B 56 239 239 HOH HOH . 
H 4 HOH B 57 242 242 HOH HOH . 
H 4 HOH B 58 243 243 HOH HOH . 
H 4 HOH B 59 244 244 HOH HOH . 
H 4 HOH B 60 245 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P SGP . . . D 3 19.583 46.021 46.752 1 33.71 ? P SGP 107 A 1 
HETATM 2 S S1P SGP . . . D 3 19.022 45.989 48.564 1 31.26 ? S1P SGP 107 A 1 
HETATM 3 O O1P SGP . . . D 3 19.063 47.303 46.234 1 29.63 ? O1P SGP 107 A 1 
HETATM 4 O O5' SGP . . . D 3 22.764 42.316 44.888 1 25.19 ? O5' SGP 107 A 1 
HETATM 5 C C5' SGP . . . D 3 23.425 43.579 44.995 1 22.53 ? C5' SGP 107 A 1 
HETATM 6 C C4' SGP . . . D 3 22.544 44.806 44.951 1 21.07 ? C4' SGP 107 A 1 
HETATM 7 O O4' SGP . . . D 3 21.865 44.828 43.685 1 22.36 ? O4' SGP 107 A 1 
HETATM 8 C C3' SGP . . . D 3 21.437 44.817 45.986 1 22.55 ? C3' SGP 107 A 1 
HETATM 9 O O3' SGP . . . D 3 21.11 46.17 46.351 1 23.99 ? O3' SGP 107 A 1 
HETATM 10 C C2' SGP . . . D 3 20.137 44.259 45.196 1 20.44 ? C2' SGP 107 A 1 
HETATM 11 O O2' SGP . . . D 3 18.966 44.911 45.665 1 25.79 ? O2' SGP 107 A 1 
HETATM 12 C C1' SGP . . . D 3 20.415 44.892 43.838 1 18.41 ? C1' SGP 107 A 1 
HETATM 13 N N9 SGP . . . D 3 19.801 44.168 42.7 1 16.47 ? N9 SGP 107 A 1 
HETATM 14 C C8 SGP . . . D 3 19.028 44.718 41.69 1 13.45 ? C8 SGP 107 A 1 
HETATM 15 N N7 SGP . . . D 3 18.782 43.855 40.715 1 11.87 ? N7 SGP 107 A 1 
HETATM 16 C C5 SGP . . . D 3 19.427 42.675 41.108 1 13.08 ? C5 SGP 107 A 1 
HETATM 17 C C6 SGP . . . D 3 19.552 41.409 40.47 1 16.15 ? C6 SGP 107 A 1 
HETATM 18 O O6 SGP . . . D 3 19.069 41.089 39.382 1 14.06 ? O6 SGP 107 A 1 
HETATM 19 N N1 SGP . . . D 3 20.301 40.491 41.177 1 14.12 ? N1 SGP 107 A 1 
HETATM 20 C C2 SGP . . . D 3 20.873 40.733 42.373 1 14.53 ? C2 SGP 107 A 1 
HETATM 21 N N2 SGP . . . D 3 21.556 39.739 42.934 1 11.35 ? N2 SGP 107 A 1 
HETATM 22 N N3 SGP . . . D 3 20.76 41.912 42.978 1 12.13 ? N3 SGP 107 A 1 
HETATM 23 C C4 SGP . . . D 3 20.041 42.84 42.315 1 12.75 ? C4 SGP 107 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#