data_7GSP # _model_server_result.job_id JKhdyoJblJW48TceGKSAkA _model_server_result.datetime_utc '2024-10-15 00:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":108}' # _entry.id 7GSP # _exptl.entry_id 7GSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.271 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GSP _cell.length_a 58.5 _cell.length_b 58.5 _cell.length_c 133.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 10 B CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C10 H12 N5 O6 P S' _chem_comp.formula_weight 361.271 _chem_comp.id SGP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7GSP _atom_sites.fract_transf_matrix[1][1] 0.017094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 105 105 PO4 PO4 . D 3 SGP A 1 107 107 SGP SGP . E 2 PO4 B 1 106 106 PO4 PO4 . F 3 SGP B 1 108 108 SGP SGP . G 4 HOH A 1 111 111 HOH HOH . G 4 HOH A 2 112 112 HOH HOH . G 4 HOH A 3 116 116 HOH HOH . G 4 HOH A 4 119 119 HOH HOH . G 4 HOH A 5 120 120 HOH HOH . G 4 HOH A 6 123 123 HOH HOH . G 4 HOH A 7 125 125 HOH HOH . G 4 HOH A 8 126 126 HOH HOH . G 4 HOH A 9 127 127 HOH HOH . G 4 HOH A 10 128 128 HOH HOH . G 4 HOH A 11 129 129 HOH HOH . G 4 HOH A 12 133 133 HOH HOH . G 4 HOH A 13 134 134 HOH HOH . G 4 HOH A 14 135 135 HOH HOH . G 4 HOH A 15 136 136 HOH HOH . G 4 HOH A 16 139 139 HOH HOH . G 4 HOH A 17 140 140 HOH HOH . G 4 HOH A 18 144 144 HOH HOH . G 4 HOH A 19 145 145 HOH HOH . G 4 HOH A 20 146 146 HOH HOH . G 4 HOH A 21 147 147 HOH HOH . G 4 HOH A 22 149 149 HOH HOH . G 4 HOH A 23 151 151 HOH HOH . G 4 HOH A 24 152 152 HOH HOH . G 4 HOH A 25 153 153 HOH HOH . G 4 HOH A 26 155 155 HOH HOH . G 4 HOH A 27 156 156 HOH HOH . G 4 HOH A 28 157 157 HOH HOH . G 4 HOH A 29 158 158 HOH HOH . G 4 HOH A 30 159 159 HOH HOH . G 4 HOH A 31 160 160 HOH HOH . G 4 HOH A 32 161 161 HOH HOH . G 4 HOH A 33 162 162 HOH HOH . G 4 HOH A 34 163 163 HOH HOH . G 4 HOH A 35 166 166 HOH HOH . G 4 HOH A 36 167 167 HOH HOH . G 4 HOH A 37 169 169 HOH HOH . G 4 HOH A 38 171 171 HOH HOH . G 4 HOH A 39 172 172 HOH HOH . G 4 HOH A 40 174 174 HOH HOH . G 4 HOH A 41 175 175 HOH HOH . G 4 HOH A 42 176 176 HOH HOH . G 4 HOH A 43 179 179 HOH HOH . G 4 HOH A 44 180 180 HOH HOH . G 4 HOH A 45 182 182 HOH HOH . G 4 HOH A 46 183 183 HOH HOH . G 4 HOH A 47 187 187 HOH HOH . G 4 HOH A 48 188 188 HOH HOH . G 4 HOH A 49 190 190 HOH HOH . G 4 HOH A 50 191 191 HOH HOH . G 4 HOH A 51 192 192 HOH HOH . G 4 HOH A 52 193 193 HOH HOH . G 4 HOH A 53 196 196 HOH HOH . G 4 HOH A 54 200 200 HOH HOH . G 4 HOH A 55 205 205 HOH HOH . G 4 HOH A 56 208 208 HOH HOH . G 4 HOH A 57 210 210 HOH HOH . G 4 HOH A 58 211 211 HOH HOH . G 4 HOH A 59 212 212 HOH HOH . G 4 HOH A 60 214 214 HOH HOH . G 4 HOH A 61 215 215 HOH HOH . G 4 HOH A 62 217 217 HOH HOH . G 4 HOH A 63 218 218 HOH HOH . G 4 HOH A 64 219 219 HOH HOH . G 4 HOH A 65 221 221 HOH HOH . G 4 HOH A 66 222 222 HOH HOH . G 4 HOH A 67 224 224 HOH HOH . G 4 HOH A 68 226 226 HOH HOH . G 4 HOH A 69 229 229 HOH HOH . G 4 HOH A 70 230 230 HOH HOH . G 4 HOH A 71 231 231 HOH HOH . G 4 HOH A 72 233 233 HOH HOH . G 4 HOH A 73 234 234 HOH HOH . G 4 HOH A 74 235 235 HOH HOH . G 4 HOH A 75 237 237 HOH HOH . G 4 HOH A 76 240 240 HOH HOH . G 4 HOH A 77 241 241 HOH HOH . G 4 HOH A 78 246 246 HOH HOH . G 4 HOH A 79 247 247 HOH HOH . H 4 HOH B 1 109 109 HOH HOH . H 4 HOH B 2 110 110 HOH HOH . H 4 HOH B 3 113 113 HOH HOH . H 4 HOH B 4 114 114 HOH HOH . H 4 HOH B 5 115 115 HOH HOH . H 4 HOH B 6 117 117 HOH HOH . H 4 HOH B 7 118 118 HOH HOH . H 4 HOH B 8 121 121 HOH HOH . H 4 HOH B 9 122 122 HOH HOH . H 4 HOH B 10 124 124 HOH HOH . H 4 HOH B 11 130 130 HOH HOH . H 4 HOH B 12 131 131 HOH HOH . H 4 HOH B 13 132 132 HOH HOH . H 4 HOH B 14 137 137 HOH HOH . H 4 HOH B 15 138 138 HOH HOH . H 4 HOH B 16 141 141 HOH HOH . H 4 HOH B 17 142 142 HOH HOH . H 4 HOH B 18 143 143 HOH HOH . H 4 HOH B 19 148 148 HOH HOH . H 4 HOH B 20 150 150 HOH HOH . H 4 HOH B 21 154 154 HOH HOH . H 4 HOH B 22 164 164 HOH HOH . H 4 HOH B 23 165 165 HOH HOH . H 4 HOH B 24 168 168 HOH HOH . H 4 HOH B 25 170 170 HOH HOH . H 4 HOH B 26 173 173 HOH HOH . H 4 HOH B 27 177 177 HOH HOH . H 4 HOH B 28 178 178 HOH HOH . H 4 HOH B 29 181 181 HOH HOH . H 4 HOH B 30 184 184 HOH HOH . H 4 HOH B 31 185 185 HOH HOH . H 4 HOH B 32 186 186 HOH HOH . H 4 HOH B 33 189 189 HOH HOH . H 4 HOH B 34 194 194 HOH HOH . H 4 HOH B 35 195 195 HOH HOH . H 4 HOH B 36 197 197 HOH HOH . H 4 HOH B 37 198 198 HOH HOH . H 4 HOH B 38 199 199 HOH HOH . H 4 HOH B 39 201 201 HOH HOH . H 4 HOH B 40 202 202 HOH HOH . H 4 HOH B 41 203 203 HOH HOH . H 4 HOH B 42 204 204 HOH HOH . H 4 HOH B 43 206 206 HOH HOH . H 4 HOH B 44 207 207 HOH HOH . H 4 HOH B 45 209 209 HOH HOH . H 4 HOH B 46 213 213 HOH HOH . H 4 HOH B 47 216 216 HOH HOH . H 4 HOH B 48 220 220 HOH HOH . H 4 HOH B 49 223 223 HOH HOH . H 4 HOH B 50 225 225 HOH HOH . H 4 HOH B 51 227 227 HOH HOH . H 4 HOH B 52 228 228 HOH HOH . H 4 HOH B 53 232 232 HOH HOH . H 4 HOH B 54 236 236 HOH HOH . H 4 HOH B 55 238 238 HOH HOH . H 4 HOH B 56 239 239 HOH HOH . H 4 HOH B 57 242 242 HOH HOH . H 4 HOH B 58 243 243 HOH HOH . H 4 HOH B 59 244 244 HOH HOH . H 4 HOH B 60 245 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P SGP . . . F 3 32.51 41.88 75.974 1 40.36 ? P SGP 108 B 1 HETATM 2 S S1P SGP . . . F 3 33.029 40.901 74.433 1 35.61 ? S1P SGP 108 B 1 HETATM 3 O O1P SGP . . . F 3 32.415 40.808 77.021 1 36.48 ? O1P SGP 108 B 1 HETATM 4 O O5' SGP . . . F 3 32.24 47.104 76.341 1 34.84 ? O5' SGP 108 B 1 HETATM 5 C C5' SGP . . . F 3 33.428 46.562 76.97 1 32.69 ? C5' SGP 108 B 1 HETATM 6 C C4' SGP . . . F 3 33.298 45.139 77.454 1 32.56 ? C4' SGP 108 B 1 HETATM 7 O O4' SGP . . . F 3 32.241 45.136 78.403 1 30.71 ? O4' SGP 108 B 1 HETATM 8 C C3' SGP . . . F 3 32.919 44.145 76.392 1 33.22 ? C3' SGP 108 B 1 HETATM 9 O O3' SGP . . . F 3 33.48 42.838 76.65 1 37.14 ? O3' SGP 108 B 1 HETATM 10 C C2' SGP . . . F 3 31.367 43.966 76.597 1 32.91 ? C2' SGP 108 B 1 HETATM 11 O O2' SGP . . . F 3 31.021 42.592 76.269 1 35.59 ? O2' SGP 108 B 1 HETATM 12 C C1' SGP . . . F 3 31.285 44.119 78.086 1 29.97 ? C1' SGP 108 B 1 HETATM 13 N N9 SGP . . . F 3 29.959 44.548 78.605 1 24.64 ? N9 SGP 108 B 1 HETATM 14 C C8 SGP . . . F 3 29.216 43.954 79.607 1 22.77 ? C8 SGP 108 B 1 HETATM 15 N N7 SGP . . . F 3 28.215 44.676 80.032 1 22.18 ? N7 SGP 108 B 1 HETATM 16 C C5 SGP . . . F 3 28.314 45.82 79.243 1 22.62 ? C5 SGP 108 B 1 HETATM 17 C C6 SGP . . . F 3 27.522 47.013 79.242 1 22.96 ? C6 SGP 108 B 1 HETATM 18 O O6 SGP . . . F 3 26.593 47.264 80.004 1 21.99 ? O6 SGP 108 B 1 HETATM 19 N N1 SGP . . . F 3 27.93 47.953 78.304 1 21.88 ? N1 SGP 108 B 1 HETATM 20 C C2 SGP . . . F 3 28.998 47.786 77.44 1 20.96 ? C2 SGP 108 B 1 HETATM 21 N N2 SGP . . . F 3 29.266 48.804 76.624 1 18.25 ? N2 SGP 108 B 1 HETATM 22 N N3 SGP . . . F 3 29.757 46.666 77.435 1 20.91 ? N3 SGP 108 B 1 HETATM 23 C C4 SGP . . . F 3 29.365 45.734 78.357 1 20.59 ? C4 SGP 108 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 587 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #