data_7GSR # _model_server_result.job_id gkpD3c4JN6cZ3b8LfvMIMw _model_server_result.datetime_utc '2024-11-22 06:41:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GSR # _exptl.entry_id 7GSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.268 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(piperidin-1-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GSR _cell.length_a 89.533 _cell.length_b 89.533 _cell.length_c 106.193 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N2 O' _chem_comp.formula_weight 204.268 _chem_comp.id A1AA9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(piperidin-1-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 A1AA9 doub 1 n y C06 C07 A1AA9 sing 2 n y C05 C04 A1AA9 sing 3 n y C07 C08 A1AA9 doub 4 n y C02 O03 A1AA9 doub 5 n n C02 C04 A1AA9 sing 6 n n C02 N01 A1AA9 sing 7 n n C04 C09 A1AA9 doub 8 n y C08 C09 A1AA9 sing 9 n y C09 N10 A1AA9 sing 10 n n C15 N10 A1AA9 sing 11 n n C15 C14 A1AA9 sing 12 n n N10 C11 A1AA9 sing 13 n n C14 C13 A1AA9 sing 14 n n C13 C12 A1AA9 sing 15 n n C11 C12 A1AA9 sing 16 n n C13 H132 A1AA9 sing 17 n n C13 H131 A1AA9 sing 18 n n C15 H151 A1AA9 sing 19 n n C15 H152 A1AA9 sing 20 n n C05 H051 A1AA9 sing 21 n n C06 H061 A1AA9 sing 22 n n C07 H071 A1AA9 sing 23 n n C08 H081 A1AA9 sing 24 n n C11 H112 A1AA9 sing 25 n n C11 H111 A1AA9 sing 26 n n C12 H122 A1AA9 sing 27 n n C12 H121 A1AA9 sing 28 n n C14 H142 A1AA9 sing 29 n n C14 H141 A1AA9 sing 30 n n N01 H012 A1AA9 sing 31 n n N01 H011 A1AA9 sing 32 n n # _atom_sites.entry_id 7GSR _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0.006448 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 A1AA9 A 1 402 301 A1AA9 LIG . D 4 HOH A 1 501 696 HOH HOH . D 4 HOH A 2 502 621 HOH HOH . D 4 HOH A 3 503 566 HOH HOH . D 4 HOH A 4 504 673 HOH HOH . D 4 HOH A 5 505 685 HOH HOH . D 4 HOH A 6 506 482 HOH HOH . D 4 HOH A 7 507 589 HOH HOH . D 4 HOH A 8 508 576 HOH HOH . D 4 HOH A 9 509 689 HOH HOH . D 4 HOH A 10 510 627 HOH HOH . D 4 HOH A 11 511 421 HOH HOH . D 4 HOH A 12 512 443 HOH HOH . D 4 HOH A 13 513 538 HOH HOH . D 4 HOH A 14 514 470 HOH HOH . D 4 HOH A 15 515 507 HOH HOH . D 4 HOH A 16 516 678 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 664 HOH HOH . D 4 HOH A 19 519 569 HOH HOH . D 4 HOH A 20 520 429 HOH HOH . D 4 HOH A 21 521 419 HOH HOH . D 4 HOH A 22 522 491 HOH HOH . D 4 HOH A 23 523 464 HOH HOH . D 4 HOH A 24 524 536 HOH HOH . D 4 HOH A 25 525 559 HOH HOH . D 4 HOH A 26 526 654 HOH HOH . D 4 HOH A 27 527 704 HOH HOH . D 4 HOH A 28 528 611 HOH HOH . D 4 HOH A 29 529 448 HOH HOH . D 4 HOH A 30 530 688 HOH HOH . D 4 HOH A 31 531 465 HOH HOH . D 4 HOH A 32 532 524 HOH HOH . D 4 HOH A 33 533 695 HOH HOH . D 4 HOH A 34 534 402 HOH HOH . D 4 HOH A 35 535 590 HOH HOH . D 4 HOH A 36 536 628 HOH HOH . D 4 HOH A 37 537 693 HOH HOH . D 4 HOH A 38 538 466 HOH HOH . D 4 HOH A 39 539 631 HOH HOH . D 4 HOH A 40 540 441 HOH HOH . D 4 HOH A 41 541 413 HOH HOH . D 4 HOH A 42 542 501 HOH HOH . D 4 HOH A 43 543 587 HOH HOH . D 4 HOH A 44 544 625 HOH HOH . D 4 HOH A 45 545 658 HOH HOH . D 4 HOH A 46 546 417 HOH HOH . D 4 HOH A 47 547 556 HOH HOH . D 4 HOH A 48 548 479 HOH HOH . D 4 HOH A 49 549 412 HOH HOH . D 4 HOH A 50 550 405 HOH HOH . D 4 HOH A 51 551 549 HOH HOH . D 4 HOH A 52 552 406 HOH HOH . D 4 HOH A 53 553 409 HOH HOH . D 4 HOH A 54 554 634 HOH HOH . D 4 HOH A 55 555 577 HOH HOH . D 4 HOH A 56 556 430 HOH HOH . D 4 HOH A 57 557 660 HOH HOH . D 4 HOH A 58 558 427 HOH HOH . D 4 HOH A 59 559 481 HOH HOH . D 4 HOH A 60 560 407 HOH HOH . D 4 HOH A 61 561 431 HOH HOH . D 4 HOH A 62 562 504 HOH HOH . D 4 HOH A 63 563 493 HOH HOH . D 4 HOH A 64 564 698 HOH HOH . D 4 HOH A 65 565 444 HOH HOH . D 4 HOH A 66 566 404 HOH HOH . D 4 HOH A 67 567 581 HOH HOH . D 4 HOH A 68 568 666 HOH HOH . D 4 HOH A 69 569 436 HOH HOH . D 4 HOH A 70 570 435 HOH HOH . D 4 HOH A 71 571 411 HOH HOH . D 4 HOH A 72 572 519 HOH HOH . D 4 HOH A 73 573 676 HOH HOH . D 4 HOH A 74 574 540 HOH HOH . D 4 HOH A 75 575 447 HOH HOH . D 4 HOH A 76 576 619 HOH HOH . D 4 HOH A 77 577 489 HOH HOH . D 4 HOH A 78 578 426 HOH HOH . D 4 HOH A 79 579 509 HOH HOH . D 4 HOH A 80 580 434 HOH HOH . D 4 HOH A 81 581 486 HOH HOH . D 4 HOH A 82 582 522 HOH HOH . D 4 HOH A 83 583 648 HOH HOH . D 4 HOH A 84 584 497 HOH HOH . D 4 HOH A 85 585 415 HOH HOH . D 4 HOH A 86 586 635 HOH HOH . D 4 HOH A 87 587 580 HOH HOH . D 4 HOH A 88 588 496 HOH HOH . D 4 HOH A 89 589 530 HOH HOH . D 4 HOH A 90 590 452 HOH HOH . D 4 HOH A 91 591 575 HOH HOH . D 4 HOH A 92 592 423 HOH HOH . D 4 HOH A 93 593 468 HOH HOH . D 4 HOH A 94 594 410 HOH HOH . D 4 HOH A 95 595 554 HOH HOH . D 4 HOH A 96 596 449 HOH HOH . D 4 HOH A 97 597 408 HOH HOH . D 4 HOH A 98 598 675 HOH HOH . D 4 HOH A 99 599 528 HOH HOH . D 4 HOH A 100 600 521 HOH HOH . D 4 HOH A 101 601 418 HOH HOH . D 4 HOH A 102 602 437 HOH HOH . D 4 HOH A 103 603 460 HOH HOH . D 4 HOH A 104 604 539 HOH HOH . D 4 HOH A 105 605 703 HOH HOH . D 4 HOH A 106 606 602 HOH HOH . D 4 HOH A 107 607 420 HOH HOH . D 4 HOH A 108 608 403 HOH HOH . D 4 HOH A 109 609 503 HOH HOH . D 4 HOH A 110 610 605 HOH HOH . D 4 HOH A 111 611 520 HOH HOH . D 4 HOH A 112 612 699 HOH HOH . D 4 HOH A 113 613 636 HOH HOH . D 4 HOH A 114 614 446 HOH HOH . D 4 HOH A 115 615 475 HOH HOH . D 4 HOH A 116 616 616 HOH HOH . D 4 HOH A 117 617 450 HOH HOH . D 4 HOH A 118 618 459 HOH HOH . D 4 HOH A 119 619 451 HOH HOH . D 4 HOH A 120 620 552 HOH HOH . D 4 HOH A 121 621 455 HOH HOH . D 4 HOH A 122 622 463 HOH HOH . D 4 HOH A 123 623 424 HOH HOH . D 4 HOH A 124 624 440 HOH HOH . D 4 HOH A 125 625 527 HOH HOH . D 4 HOH A 126 626 492 HOH HOH . D 4 HOH A 127 627 533 HOH HOH . D 4 HOH A 128 628 668 HOH HOH . D 4 HOH A 129 629 690 HOH HOH . D 4 HOH A 130 630 467 HOH HOH . D 4 HOH A 131 631 505 HOH HOH . D 4 HOH A 132 632 422 HOH HOH . D 4 HOH A 133 633 646 HOH HOH . D 4 HOH A 134 634 474 HOH HOH . D 4 HOH A 135 635 561 HOH HOH . D 4 HOH A 136 636 416 HOH HOH . D 4 HOH A 137 637 414 HOH HOH . D 4 HOH A 138 638 546 HOH HOH . D 4 HOH A 139 639 638 HOH HOH . D 4 HOH A 140 640 657 HOH HOH . D 4 HOH A 141 641 488 HOH HOH . D 4 HOH A 142 642 439 HOH HOH . D 4 HOH A 143 643 477 HOH HOH . D 4 HOH A 144 644 442 HOH HOH . D 4 HOH A 145 645 562 HOH HOH . D 4 HOH A 146 646 553 HOH HOH . D 4 HOH A 147 647 484 HOH HOH . D 4 HOH A 148 648 684 HOH HOH . D 4 HOH A 149 649 456 HOH HOH . D 4 HOH A 150 650 478 HOH HOH . D 4 HOH A 151 651 669 HOH HOH . D 4 HOH A 152 652 700 HOH HOH . D 4 HOH A 153 653 476 HOH HOH . D 4 HOH A 154 654 659 HOH HOH . D 4 HOH A 155 655 672 HOH HOH . D 4 HOH A 156 656 535 HOH HOH . D 4 HOH A 157 657 506 HOH HOH . D 4 HOH A 158 658 454 HOH HOH . D 4 HOH A 159 659 483 HOH HOH . D 4 HOH A 160 660 526 HOH HOH . D 4 HOH A 161 661 438 HOH HOH . D 4 HOH A 162 662 563 HOH HOH . D 4 HOH A 163 663 432 HOH HOH . D 4 HOH A 164 664 560 HOH HOH . D 4 HOH A 165 665 457 HOH HOH . D 4 HOH A 166 666 510 HOH HOH . D 4 HOH A 167 667 551 HOH HOH . D 4 HOH A 168 668 490 HOH HOH . D 4 HOH A 169 669 624 HOH HOH . D 4 HOH A 170 670 458 HOH HOH . D 4 HOH A 171 671 661 HOH HOH . D 4 HOH A 172 672 472 HOH HOH . D 4 HOH A 173 673 543 HOH HOH . D 4 HOH A 174 674 702 HOH HOH . D 4 HOH A 175 675 597 HOH HOH . D 4 HOH A 176 676 523 HOH HOH . D 4 HOH A 177 677 542 HOH HOH . D 4 HOH A 178 678 637 HOH HOH . D 4 HOH A 179 679 469 HOH HOH . D 4 HOH A 180 680 653 HOH HOH . D 4 HOH A 181 681 694 HOH HOH . D 4 HOH A 182 682 514 HOH HOH . D 4 HOH A 183 683 567 HOH HOH . D 4 HOH A 184 684 677 HOH HOH . D 4 HOH A 185 685 687 HOH HOH . D 4 HOH A 186 686 555 HOH HOH . D 4 HOH A 187 687 565 HOH HOH . D 4 HOH A 188 688 594 HOH HOH . D 4 HOH A 189 689 665 HOH HOH . D 4 HOH A 190 690 656 HOH HOH . D 4 HOH A 191 691 701 HOH HOH . D 4 HOH A 192 692 652 HOH HOH . D 4 HOH A 193 693 541 HOH HOH . D 4 HOH A 194 694 614 HOH HOH . D 4 HOH A 195 695 502 HOH HOH . D 4 HOH A 196 696 630 HOH HOH . D 4 HOH A 197 697 453 HOH HOH . D 4 HOH A 198 698 598 HOH HOH . D 4 HOH A 199 699 487 HOH HOH . D 4 HOH A 200 700 674 HOH HOH . D 4 HOH A 201 701 617 HOH HOH . D 4 HOH A 202 702 662 HOH HOH . D 4 HOH A 203 703 462 HOH HOH . D 4 HOH A 204 704 574 HOH HOH . D 4 HOH A 205 705 679 HOH HOH . D 4 HOH A 206 706 433 HOH HOH . D 4 HOH A 207 707 595 HOH HOH . D 4 HOH A 208 708 647 HOH HOH . D 4 HOH A 209 709 579 HOH HOH . D 4 HOH A 210 710 529 HOH HOH . D 4 HOH A 211 711 548 HOH HOH . D 4 HOH A 212 712 650 HOH HOH . D 4 HOH A 213 713 649 HOH HOH . D 4 HOH A 214 714 670 HOH HOH . D 4 HOH A 215 715 608 HOH HOH . D 4 HOH A 216 716 663 HOH HOH . D 4 HOH A 217 717 651 HOH HOH . D 4 HOH A 218 718 655 HOH HOH . D 4 HOH A 219 719 512 HOH HOH . D 4 HOH A 220 720 682 HOH HOH . D 4 HOH A 221 721 639 HOH HOH . D 4 HOH A 222 722 606 HOH HOH . D 4 HOH A 223 723 471 HOH HOH . D 4 HOH A 224 724 686 HOH HOH . D 4 HOH A 225 725 525 HOH HOH . D 4 HOH A 226 726 671 HOH HOH . D 4 HOH A 227 727 642 HOH HOH . D 4 HOH A 228 728 681 HOH HOH . D 4 HOH A 229 729 645 HOH HOH . D 4 HOH A 230 730 473 HOH HOH . D 4 HOH A 231 731 578 HOH HOH . D 4 HOH A 232 732 596 HOH HOH . D 4 HOH A 233 733 644 HOH HOH . D 4 HOH A 234 734 667 HOH HOH . D 4 HOH A 235 735 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1AA9 . . . C 3 47.184 -44.367 -4.801 0.44 37.66 ? C13 A1AA9 402 A 1 HETATM 2 C C15 A1AA9 . . . C 3 49.304 -44.324 -6.167 0.44 42.48 ? C15 A1AA9 402 A 1 HETATM 3 C C02 A1AA9 . . . C 3 48.071 -47.999 -7.747 0.44 40.69 ? C02 A1AA9 402 A 1 HETATM 4 C C04 A1AA9 . . . C 3 49.517 -47.613 -7.741 0.44 40.43 ? C04 A1AA9 402 A 1 HETATM 5 C C05 A1AA9 . . . C 3 50.383 -48.361 -8.552 0.44 41.43 ? C05 A1AA9 402 A 1 HETATM 6 C C06 A1AA9 . . . C 3 51.771 -48.074 -8.595 0.44 43.32 ? C06 A1AA9 402 A 1 HETATM 7 C C07 A1AA9 . . . C 3 52.283 -47.031 -7.825 0.44 40.46 ? C07 A1AA9 402 A 1 HETATM 8 C C08 A1AA9 . . . C 3 51.439 -46.278 -6.993 0.44 40.61 ? C08 A1AA9 402 A 1 HETATM 9 C C09 A1AA9 . . . C 3 50.045 -46.552 -6.946 0.44 40.88 ? C09 A1AA9 402 A 1 HETATM 10 C C11 A1AA9 . . . C 3 48.888 -46.266 -4.738 0.44 43.27 ? C11 A1AA9 402 A 1 HETATM 11 C C12 A1AA9 . . . C 3 47.868 -45.428 -3.914 0.44 40.93 ? C12 A1AA9 402 A 1 HETATM 12 C C14 A1AA9 . . . C 3 48.219 -43.492 -5.516 0.44 37.21 ? C14 A1AA9 402 A 1 HETATM 13 N N01 A1AA9 . . . C 3 47.72 -49.342 -7.736 0.44 37.69 ? N01 A1AA9 402 A 1 HETATM 14 N N10 A1AA9 . . . C 3 49.138 -45.805 -6.113 0.44 43.39 ? N10 A1AA9 402 A 1 HETATM 15 O O03 A1AA9 . . . C 3 47.169 -47.172 -7.744 0.44 39.4 ? O03 A1AA9 402 A 1 HETATM 16 H H132 A1AA9 . . . C 3 46.491 -44.839 -5.527 0.44 38.3 ? H132 A1AA9 402 A 1 HETATM 17 H H131 A1AA9 . . . C 3 46.516 -43.734 -4.187 0.44 38.25 ? H131 A1AA9 402 A 1 HETATM 18 H H151 A1AA9 . . . C 3 49.464 -43.98 -7.204 0.44 41.38 ? H151 A1AA9 402 A 1 HETATM 19 H H152 A1AA9 . . . C 3 50.258 -44.125 -5.63 0.44 41.39 ? H152 A1AA9 402 A 1 HETATM 20 H H051 A1AA9 . . . C 3 49.997 -49.175 -9.164 0.44 41.59 ? H051 A1AA9 402 A 1 HETATM 21 H H061 A1AA9 . . . C 3 52.429 -48.66 -9.238 0.44 42.12 ? H061 A1AA9 402 A 1 HETATM 22 H H071 A1AA9 . . . C 3 53.353 -46.809 -7.857 0.44 41.18 ? H071 A1AA9 402 A 1 HETATM 23 H H081 A1AA9 . . . C 3 51.864 -45.475 -6.406 0.44 40.74 ? H081 A1AA9 402 A 1 HETATM 24 H H112 A1AA9 . . . C 3 49.833 -46.374 -4.172 0.44 42.75 ? H112 A1AA9 402 A 1 HETATM 25 H H111 A1AA9 . . . C 3 48.481 -47.295 -4.863 0.44 42.75 ? H111 A1AA9 402 A 1 HETATM 26 H H122 A1AA9 . . . C 3 47.106 -46.105 -3.485 0.44 40.67 ? H122 A1AA9 402 A 1 HETATM 27 H H121 A1AA9 . . . C 3 48.346 -44.948 -3.042 0.44 40.67 ? H121 A1AA9 402 A 1 HETATM 28 H H142 A1AA9 . . . C 3 47.724 -42.825 -6.243 0.44 38.49 ? H142 A1AA9 402 A 1 HETATM 29 H H141 A1AA9 . . . C 3 48.688 -42.802 -4.788 0.44 38.51 ? H141 A1AA9 402 A 1 HETATM 30 H H012 A1AA9 . . . C 3 46.788 -49.686 -7.738 0.44 38.65 ? H012 A1AA9 402 A 1 HETATM 31 H H011 A1AA9 . . . C 3 48.441 -50.047 -7.734 0.44 38.66 ? H011 A1AA9 402 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #