data_7GSY # _model_server_result.job_id lJXaaBL6wOc9W4swLeu28Q _model_server_result.datetime_utc '2025-07-28 00:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7GSY # _exptl.entry_id 7GSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GSY _cell.length_a 90.373 _cell.length_b 90.373 _cell.length_c 107.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 358 n n C C2 TRS sing 359 n n C C3 TRS sing 360 n n C N TRS sing 361 n n C1 O1 TRS sing 362 n n C1 H11 TRS sing 363 n n C1 H12 TRS sing 364 n n C2 O2 TRS sing 365 n n C2 H21 TRS sing 366 n n C2 H22 TRS sing 367 n n C3 O3 TRS sing 368 n n C3 H31 TRS sing 369 n n C3 H32 TRS sing 370 n n N HN1 TRS sing 371 n n N HN2 TRS sing 372 n n N HN3 TRS sing 373 n n O1 HO1 TRS sing 374 n n O2 HO2 TRS sing 375 n n O3 HO3 TRS sing 376 n n # _atom_sites.entry_id 7GSY _atom_sites.fract_transf_matrix[1][1] 0.011065 _atom_sites.fract_transf_matrix[1][2] 0.006389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 A1ABF A 1 402 301 A1ABF LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 621 HOH HOH . D 4 HOH A 4 504 696 HOH HOH . D 4 HOH A 5 505 673 HOH HOH . D 4 HOH A 6 506 678 HOH HOH . D 4 HOH A 7 507 482 HOH HOH . D 4 HOH A 8 508 524 HOH HOH . D 4 HOH A 9 509 517 HOH HOH . D 4 HOH A 10 510 689 HOH HOH . D 4 HOH A 11 511 423 HOH HOH . D 4 HOH A 12 512 688 HOH HOH . D 4 HOH A 13 513 634 HOH HOH . D 4 HOH A 14 514 538 HOH HOH . D 4 HOH A 15 515 452 HOH HOH . D 4 HOH A 16 516 677 HOH HOH . D 4 HOH A 17 517 628 HOH HOH . D 4 HOH A 18 518 605 HOH HOH . D 4 HOH A 19 519 470 HOH HOH . D 4 HOH A 20 520 685 HOH HOH . D 4 HOH A 21 521 632 HOH HOH . D 4 HOH A 22 522 590 HOH HOH . D 4 HOH A 23 523 419 HOH HOH . D 4 HOH A 24 524 698 HOH HOH . D 4 HOH A 25 525 528 HOH HOH . D 4 HOH A 26 526 664 HOH HOH . D 4 HOH A 27 527 695 HOH HOH . D 4 HOH A 28 528 589 HOH HOH . D 4 HOH A 29 529 676 HOH HOH . D 4 HOH A 30 530 421 HOH HOH . D 4 HOH A 31 531 501 HOH HOH . D 4 HOH A 32 532 611 HOH HOH . D 4 HOH A 33 533 665 HOH HOH . D 4 HOH A 34 534 436 HOH HOH . D 4 HOH A 35 535 497 HOH HOH . D 4 HOH A 36 536 704 HOH HOH . D 4 HOH A 37 537 507 HOH HOH . D 4 HOH A 38 538 474 HOH HOH . D 4 HOH A 39 539 414 HOH HOH . D 4 HOH A 40 540 408 HOH HOH . D 4 HOH A 41 541 434 HOH HOH . D 4 HOH A 42 542 666 HOH HOH . D 4 HOH A 43 543 429 HOH HOH . D 4 HOH A 44 544 449 HOH HOH . D 4 HOH A 45 545 450 HOH HOH . D 4 HOH A 46 546 468 HOH HOH . D 4 HOH A 47 547 426 HOH HOH . D 4 HOH A 48 548 448 HOH HOH . D 4 HOH A 49 549 627 HOH HOH . D 4 HOH A 50 550 461 HOH HOH . D 4 HOH A 51 551 443 HOH HOH . D 4 HOH A 52 552 658 HOH HOH . D 4 HOH A 53 553 460 HOH HOH . D 4 HOH A 54 554 491 HOH HOH . D 4 HOH A 55 555 581 HOH HOH . D 4 HOH A 56 556 413 HOH HOH . D 4 HOH A 57 557 536 HOH HOH . D 4 HOH A 58 558 616 HOH HOH . D 4 HOH A 59 559 693 HOH HOH . D 4 HOH A 60 560 415 HOH HOH . D 4 HOH A 61 561 409 HOH HOH . D 4 HOH A 62 562 437 HOH HOH . D 4 HOH A 63 563 406 HOH HOH . D 4 HOH A 64 564 411 HOH HOH . D 4 HOH A 65 565 520 HOH HOH . D 4 HOH A 66 566 465 HOH HOH . D 4 HOH A 67 567 504 HOH HOH . D 4 HOH A 68 568 404 HOH HOH . D 4 HOH A 69 569 481 HOH HOH . D 4 HOH A 70 570 625 HOH HOH . D 4 HOH A 71 571 467 HOH HOH . D 4 HOH A 72 572 631 HOH HOH . D 4 HOH A 73 573 435 HOH HOH . D 4 HOH A 74 574 446 HOH HOH . D 4 HOH A 75 575 431 HOH HOH . D 4 HOH A 76 576 519 HOH HOH . D 4 HOH A 77 577 522 HOH HOH . D 4 HOH A 78 578 412 HOH HOH . D 4 HOH A 79 579 405 HOH HOH . D 4 HOH A 80 580 402 HOH HOH . D 4 HOH A 81 581 441 HOH HOH . D 4 HOH A 82 582 486 HOH HOH . D 4 HOH A 83 583 410 HOH HOH . D 4 HOH A 84 584 466 HOH HOH . D 4 HOH A 85 585 430 HOH HOH . D 4 HOH A 86 586 417 HOH HOH . D 4 HOH A 87 587 530 HOH HOH . D 4 HOH A 88 588 638 HOH HOH . D 4 HOH A 89 589 699 HOH HOH . D 4 HOH A 90 590 700 HOH HOH . D 4 HOH A 91 591 683 HOH HOH . D 4 HOH A 92 592 493 HOH HOH . D 4 HOH A 93 593 587 HOH HOH . D 4 HOH A 94 594 637 HOH HOH . D 4 HOH A 95 595 540 HOH HOH . D 4 HOH A 96 596 447 HOH HOH . D 4 HOH A 97 597 424 HOH HOH . D 4 HOH A 98 598 533 HOH HOH . D 4 HOH A 99 599 513 HOH HOH . D 4 HOH A 100 600 496 HOH HOH . D 4 HOH A 101 601 549 HOH HOH . D 4 HOH A 102 602 526 HOH HOH . D 4 HOH A 103 603 672 HOH HOH . D 4 HOH A 104 604 556 HOH HOH . D 4 HOH A 105 605 509 HOH HOH . D 4 HOH A 106 606 444 HOH HOH . D 4 HOH A 107 607 619 HOH HOH . D 4 HOH A 108 608 503 HOH HOH . D 4 HOH A 109 609 440 HOH HOH . D 4 HOH A 110 610 416 HOH HOH . D 4 HOH A 111 611 489 HOH HOH . D 4 HOH A 112 612 575 HOH HOH . D 4 HOH A 113 613 403 HOH HOH . D 4 HOH A 114 614 577 HOH HOH . D 4 HOH A 115 615 660 HOH HOH . D 4 HOH A 116 616 463 HOH HOH . D 4 HOH A 117 617 633 HOH HOH . D 4 HOH A 118 618 527 HOH HOH . D 4 HOH A 119 619 455 HOH HOH . D 4 HOH A 120 620 439 HOH HOH . D 4 HOH A 121 621 560 HOH HOH . D 4 HOH A 122 622 563 HOH HOH . D 4 HOH A 123 623 554 HOH HOH . D 4 HOH A 124 624 702 HOH HOH . D 4 HOH A 125 625 457 HOH HOH . D 4 HOH A 126 626 418 HOH HOH . D 4 HOH A 127 627 656 HOH HOH . D 4 HOH A 128 628 420 HOH HOH . D 4 HOH A 129 629 669 HOH HOH . D 4 HOH A 130 630 475 HOH HOH . D 4 HOH A 131 631 561 HOH HOH . D 4 HOH A 132 632 422 HOH HOH . D 4 HOH A 133 633 562 HOH HOH . D 4 HOH A 134 634 668 HOH HOH . D 4 HOH A 135 635 697 HOH HOH . D 4 HOH A 136 636 580 HOH HOH . D 4 HOH A 137 637 454 HOH HOH . D 4 HOH A 138 638 535 HOH HOH . D 4 HOH A 139 639 488 HOH HOH . D 4 HOH A 140 640 635 HOH HOH . D 4 HOH A 141 641 476 HOH HOH . D 4 HOH A 142 642 636 HOH HOH . D 4 HOH A 143 643 492 HOH HOH . D 4 HOH A 144 644 602 HOH HOH . D 4 HOH A 145 645 456 HOH HOH . D 4 HOH A 146 646 521 HOH HOH . D 4 HOH A 147 647 553 HOH HOH . D 4 HOH A 148 648 551 HOH HOH . D 4 HOH A 149 649 484 HOH HOH . D 4 HOH A 150 650 451 HOH HOH . D 4 HOH A 151 651 442 HOH HOH . D 4 HOH A 152 652 559 HOH HOH . D 4 HOH A 153 653 546 HOH HOH . D 4 HOH A 154 654 505 HOH HOH . D 4 HOH A 155 655 478 HOH HOH . D 4 HOH A 156 656 477 HOH HOH . D 4 HOH A 157 657 684 HOH HOH . D 4 HOH A 158 658 472 HOH HOH . D 4 HOH A 159 659 498 HOH HOH . D 4 HOH A 160 660 624 HOH HOH . D 4 HOH A 161 661 506 HOH HOH . D 4 HOH A 162 662 647 HOH HOH . D 4 HOH A 163 663 594 HOH HOH . D 4 HOH A 164 664 514 HOH HOH . D 4 HOH A 165 665 646 HOH HOH . D 4 HOH A 166 666 458 HOH HOH . D 4 HOH A 167 667 539 HOH HOH . D 4 HOH A 168 668 555 HOH HOH . D 4 HOH A 169 669 662 HOH HOH . D 4 HOH A 170 670 675 HOH HOH . D 4 HOH A 171 671 618 HOH HOH . D 4 HOH A 172 672 469 HOH HOH . D 4 HOH A 173 673 648 HOH HOH . D 4 HOH A 174 674 543 HOH HOH . D 4 HOH A 175 675 490 HOH HOH . D 4 HOH A 176 676 682 HOH HOH . D 4 HOH A 177 677 598 HOH HOH . D 4 HOH A 178 678 657 HOH HOH . D 4 HOH A 179 679 661 HOH HOH . D 4 HOH A 180 680 652 HOH HOH . D 4 HOH A 181 681 597 HOH HOH . D 4 HOH A 182 682 659 HOH HOH . D 4 HOH A 183 683 529 HOH HOH . D 4 HOH A 184 684 687 HOH HOH . D 4 HOH A 185 685 653 HOH HOH . D 4 HOH A 186 686 502 HOH HOH . D 4 HOH A 187 687 694 HOH HOH . D 4 HOH A 188 688 542 HOH HOH . D 4 HOH A 189 689 510 HOH HOH . D 4 HOH A 190 690 552 HOH HOH . D 4 HOH A 191 691 679 HOH HOH . D 4 HOH A 192 692 701 HOH HOH . D 4 HOH A 193 693 703 HOH HOH . D 4 HOH A 194 694 433 HOH HOH . D 4 HOH A 195 695 614 HOH HOH . D 4 HOH A 196 696 630 HOH HOH . D 4 HOH A 197 697 487 HOH HOH . D 4 HOH A 198 698 579 HOH HOH . D 4 HOH A 199 699 483 HOH HOH . D 4 HOH A 200 700 574 HOH HOH . D 4 HOH A 201 701 595 HOH HOH . D 4 HOH A 202 702 690 HOH HOH . D 4 HOH A 203 703 565 HOH HOH . D 4 HOH A 204 704 617 HOH HOH . D 4 HOH A 205 705 567 HOH HOH . D 4 HOH A 206 706 674 HOH HOH . D 4 HOH A 207 707 548 HOH HOH . D 4 HOH A 208 708 670 HOH HOH . D 4 HOH A 209 709 462 HOH HOH . D 4 HOH A 210 710 643 HOH HOH . D 4 HOH A 211 711 471 HOH HOH . D 4 HOH A 212 712 654 HOH HOH . D 4 HOH A 213 713 650 HOH HOH . D 4 HOH A 214 714 523 HOH HOH . D 4 HOH A 215 715 525 HOH HOH . D 4 HOH A 216 716 453 HOH HOH . D 4 HOH A 217 717 663 HOH HOH . D 4 HOH A 218 718 651 HOH HOH . D 4 HOH A 219 719 608 HOH HOH . D 4 HOH A 220 720 681 HOH HOH . D 4 HOH A 221 721 649 HOH HOH . D 4 HOH A 222 722 671 HOH HOH . D 4 HOH A 223 723 642 HOH HOH . D 4 HOH A 224 724 512 HOH HOH . D 4 HOH A 225 725 606 HOH HOH . D 4 HOH A 226 726 596 HOH HOH . D 4 HOH A 227 727 686 HOH HOH . D 4 HOH A 228 728 655 HOH HOH . D 4 HOH A 229 729 518 HOH HOH . D 4 HOH A 230 730 578 HOH HOH . D 4 HOH A 231 731 639 HOH HOH . D 4 HOH A 232 732 473 HOH HOH . D 4 HOH A 233 733 667 HOH HOH . D 4 HOH A 234 734 644 HOH HOH . D 4 HOH A 235 735 645 HOH HOH . D 4 HOH A 236 736 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -44.194 -1.089 -5.011 1 59.91 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 -44.961 -0.555 -3.787 1 60.4 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 -45.083 -1.127 -6.258 1 72.72 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 -43.633 -2.47 -4.701 1 45 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 -43.013 -0.19 -5.316 1 52.69 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 -45.003 0.882 -3.714 1 47.73 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 -46.203 -0.255 -6.144 1 83.4 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 -42.723 -2.421 -3.581 1 36.77 ? O3 TRS 401 A 1 HETATM 9 H H11 TRS . . . B 2 -44.533 -0.895 -2.976 1 56.65 ? H11 TRS 401 A 1 HETATM 10 H H12 TRS . . . B 2 -45.875 -0.901 -3.807 1 56.98 ? H12 TRS 401 A 1 HETATM 11 H H21 TRS . . . B 2 -45.395 -2.044 -6.409 1 71.65 ? H21 TRS 401 A 1 HETATM 12 H H22 TRS . . . B 2 -44.552 -0.852 -7.039 1 71.63 ? H22 TRS 401 A 1 HETATM 13 H H31 TRS . . . B 2 -43.165 -2.813 -5.49 1 45.93 ? H31 TRS 401 A 1 HETATM 14 H H32 TRS . . . B 2 -44.373 -3.079 -4.496 1 45.91 ? H32 TRS 401 A 1 HETATM 15 H HN1 TRS . . . B 2 -42.292 -0.672 -5.593 1 54.73 ? HN1 TRS 401 A 1 HETATM 16 H HN2 TRS . . . B 2 -42.772 0.28 -4.575 1 54.78 ? HN2 TRS 401 A 1 HETATM 17 H HN3 TRS . . . B 2 -43.217 0.41 -5.97 1 54.9 ? HN3 TRS 401 A 1 HETATM 18 H HO1 TRS . . . B 2 -45.383 1.293 -2.94 1 35.16 ? HO1 TRS 401 A 1 HETATM 19 H HO2 TRS . . . B 2 -46.728 0.001 -6.675 1 40.52 ? HO2 TRS 401 A 1 HETATM 20 H HO3 TRS . . . B 2 -42.35 -1.661 -3.539 1 39.44 ? HO3 TRS 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #