data_7GSY # _model_server_result.job_id khckNj9aqoIw0Ii3TrL5cQ _model_server_result.datetime_utc '2024-11-16 08:52:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GSY # _exptl.entry_id 7GSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.205 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(pyridin-2-yl)oxy]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GSY _cell.length_a 90.373 _cell.length_b 90.373 _cell.length_c 107.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H8 N2 O' _chem_comp.formula_weight 196.205 _chem_comp.id A1ABF _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(pyridin-2-yl)oxy]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 A1ABF trip 1 n n C02 C03 A1ABF sing 2 n n C15 C03 A1ABF doub 3 n y C15 C14 A1ABF sing 4 n y C03 C04 A1ABF sing 5 n y C14 C06 A1ABF doub 6 n y C11 C12 A1ABF doub 7 n y C11 C10 A1ABF sing 8 n y C12 N13 A1ABF sing 9 n y C10 C09 A1ABF doub 10 n y C04 C05 A1ABF doub 11 n y N13 C08 A1ABF doub 12 n y C06 C05 A1ABF sing 13 n y C06 O07 A1ABF sing 14 n n C09 C08 A1ABF sing 15 n y C08 O07 A1ABF sing 16 n n C10 H101 A1ABF sing 17 n n C15 H151 A1ABF sing 18 n n C04 H041 A1ABF sing 19 n n C05 H051 A1ABF sing 20 n n C09 H091 A1ABF sing 21 n n C11 H111 A1ABF sing 22 n n C12 H121 A1ABF sing 23 n n C14 H141 A1ABF sing 24 n n # _atom_sites.entry_id 7GSY _atom_sites.fract_transf_matrix[1][1] 0.011065 _atom_sites.fract_transf_matrix[1][2] 0.006389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 A1ABF A 1 402 301 A1ABF LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 621 HOH HOH . D 4 HOH A 4 504 696 HOH HOH . D 4 HOH A 5 505 673 HOH HOH . D 4 HOH A 6 506 678 HOH HOH . D 4 HOH A 7 507 482 HOH HOH . D 4 HOH A 8 508 524 HOH HOH . D 4 HOH A 9 509 517 HOH HOH . D 4 HOH A 10 510 689 HOH HOH . D 4 HOH A 11 511 423 HOH HOH . D 4 HOH A 12 512 688 HOH HOH . D 4 HOH A 13 513 634 HOH HOH . D 4 HOH A 14 514 538 HOH HOH . D 4 HOH A 15 515 452 HOH HOH . D 4 HOH A 16 516 677 HOH HOH . D 4 HOH A 17 517 628 HOH HOH . D 4 HOH A 18 518 605 HOH HOH . D 4 HOH A 19 519 470 HOH HOH . D 4 HOH A 20 520 685 HOH HOH . D 4 HOH A 21 521 632 HOH HOH . D 4 HOH A 22 522 590 HOH HOH . D 4 HOH A 23 523 419 HOH HOH . D 4 HOH A 24 524 698 HOH HOH . D 4 HOH A 25 525 528 HOH HOH . D 4 HOH A 26 526 664 HOH HOH . D 4 HOH A 27 527 695 HOH HOH . D 4 HOH A 28 528 589 HOH HOH . D 4 HOH A 29 529 676 HOH HOH . D 4 HOH A 30 530 421 HOH HOH . D 4 HOH A 31 531 501 HOH HOH . D 4 HOH A 32 532 611 HOH HOH . D 4 HOH A 33 533 665 HOH HOH . D 4 HOH A 34 534 436 HOH HOH . D 4 HOH A 35 535 497 HOH HOH . D 4 HOH A 36 536 704 HOH HOH . D 4 HOH A 37 537 507 HOH HOH . D 4 HOH A 38 538 474 HOH HOH . D 4 HOH A 39 539 414 HOH HOH . D 4 HOH A 40 540 408 HOH HOH . D 4 HOH A 41 541 434 HOH HOH . D 4 HOH A 42 542 666 HOH HOH . D 4 HOH A 43 543 429 HOH HOH . D 4 HOH A 44 544 449 HOH HOH . D 4 HOH A 45 545 450 HOH HOH . D 4 HOH A 46 546 468 HOH HOH . D 4 HOH A 47 547 426 HOH HOH . D 4 HOH A 48 548 448 HOH HOH . D 4 HOH A 49 549 627 HOH HOH . D 4 HOH A 50 550 461 HOH HOH . D 4 HOH A 51 551 443 HOH HOH . D 4 HOH A 52 552 658 HOH HOH . D 4 HOH A 53 553 460 HOH HOH . D 4 HOH A 54 554 491 HOH HOH . D 4 HOH A 55 555 581 HOH HOH . D 4 HOH A 56 556 413 HOH HOH . D 4 HOH A 57 557 536 HOH HOH . D 4 HOH A 58 558 616 HOH HOH . D 4 HOH A 59 559 693 HOH HOH . D 4 HOH A 60 560 415 HOH HOH . D 4 HOH A 61 561 409 HOH HOH . D 4 HOH A 62 562 437 HOH HOH . D 4 HOH A 63 563 406 HOH HOH . D 4 HOH A 64 564 411 HOH HOH . D 4 HOH A 65 565 520 HOH HOH . D 4 HOH A 66 566 465 HOH HOH . D 4 HOH A 67 567 504 HOH HOH . D 4 HOH A 68 568 404 HOH HOH . D 4 HOH A 69 569 481 HOH HOH . D 4 HOH A 70 570 625 HOH HOH . D 4 HOH A 71 571 467 HOH HOH . D 4 HOH A 72 572 631 HOH HOH . D 4 HOH A 73 573 435 HOH HOH . D 4 HOH A 74 574 446 HOH HOH . D 4 HOH A 75 575 431 HOH HOH . D 4 HOH A 76 576 519 HOH HOH . D 4 HOH A 77 577 522 HOH HOH . D 4 HOH A 78 578 412 HOH HOH . D 4 HOH A 79 579 405 HOH HOH . D 4 HOH A 80 580 402 HOH HOH . D 4 HOH A 81 581 441 HOH HOH . D 4 HOH A 82 582 486 HOH HOH . D 4 HOH A 83 583 410 HOH HOH . D 4 HOH A 84 584 466 HOH HOH . D 4 HOH A 85 585 430 HOH HOH . D 4 HOH A 86 586 417 HOH HOH . D 4 HOH A 87 587 530 HOH HOH . D 4 HOH A 88 588 638 HOH HOH . D 4 HOH A 89 589 699 HOH HOH . D 4 HOH A 90 590 700 HOH HOH . D 4 HOH A 91 591 683 HOH HOH . D 4 HOH A 92 592 493 HOH HOH . D 4 HOH A 93 593 587 HOH HOH . D 4 HOH A 94 594 637 HOH HOH . D 4 HOH A 95 595 540 HOH HOH . D 4 HOH A 96 596 447 HOH HOH . D 4 HOH A 97 597 424 HOH HOH . D 4 HOH A 98 598 533 HOH HOH . D 4 HOH A 99 599 513 HOH HOH . D 4 HOH A 100 600 496 HOH HOH . D 4 HOH A 101 601 549 HOH HOH . D 4 HOH A 102 602 526 HOH HOH . D 4 HOH A 103 603 672 HOH HOH . D 4 HOH A 104 604 556 HOH HOH . D 4 HOH A 105 605 509 HOH HOH . D 4 HOH A 106 606 444 HOH HOH . D 4 HOH A 107 607 619 HOH HOH . D 4 HOH A 108 608 503 HOH HOH . D 4 HOH A 109 609 440 HOH HOH . D 4 HOH A 110 610 416 HOH HOH . D 4 HOH A 111 611 489 HOH HOH . D 4 HOH A 112 612 575 HOH HOH . D 4 HOH A 113 613 403 HOH HOH . D 4 HOH A 114 614 577 HOH HOH . D 4 HOH A 115 615 660 HOH HOH . D 4 HOH A 116 616 463 HOH HOH . D 4 HOH A 117 617 633 HOH HOH . D 4 HOH A 118 618 527 HOH HOH . D 4 HOH A 119 619 455 HOH HOH . D 4 HOH A 120 620 439 HOH HOH . D 4 HOH A 121 621 560 HOH HOH . D 4 HOH A 122 622 563 HOH HOH . D 4 HOH A 123 623 554 HOH HOH . D 4 HOH A 124 624 702 HOH HOH . D 4 HOH A 125 625 457 HOH HOH . D 4 HOH A 126 626 418 HOH HOH . D 4 HOH A 127 627 656 HOH HOH . D 4 HOH A 128 628 420 HOH HOH . D 4 HOH A 129 629 669 HOH HOH . D 4 HOH A 130 630 475 HOH HOH . D 4 HOH A 131 631 561 HOH HOH . D 4 HOH A 132 632 422 HOH HOH . D 4 HOH A 133 633 562 HOH HOH . D 4 HOH A 134 634 668 HOH HOH . D 4 HOH A 135 635 697 HOH HOH . D 4 HOH A 136 636 580 HOH HOH . D 4 HOH A 137 637 454 HOH HOH . D 4 HOH A 138 638 535 HOH HOH . D 4 HOH A 139 639 488 HOH HOH . D 4 HOH A 140 640 635 HOH HOH . D 4 HOH A 141 641 476 HOH HOH . D 4 HOH A 142 642 636 HOH HOH . D 4 HOH A 143 643 492 HOH HOH . D 4 HOH A 144 644 602 HOH HOH . D 4 HOH A 145 645 456 HOH HOH . D 4 HOH A 146 646 521 HOH HOH . D 4 HOH A 147 647 553 HOH HOH . D 4 HOH A 148 648 551 HOH HOH . D 4 HOH A 149 649 484 HOH HOH . D 4 HOH A 150 650 451 HOH HOH . D 4 HOH A 151 651 442 HOH HOH . D 4 HOH A 152 652 559 HOH HOH . D 4 HOH A 153 653 546 HOH HOH . D 4 HOH A 154 654 505 HOH HOH . D 4 HOH A 155 655 478 HOH HOH . D 4 HOH A 156 656 477 HOH HOH . D 4 HOH A 157 657 684 HOH HOH . D 4 HOH A 158 658 472 HOH HOH . D 4 HOH A 159 659 498 HOH HOH . D 4 HOH A 160 660 624 HOH HOH . D 4 HOH A 161 661 506 HOH HOH . D 4 HOH A 162 662 647 HOH HOH . D 4 HOH A 163 663 594 HOH HOH . D 4 HOH A 164 664 514 HOH HOH . D 4 HOH A 165 665 646 HOH HOH . D 4 HOH A 166 666 458 HOH HOH . D 4 HOH A 167 667 539 HOH HOH . D 4 HOH A 168 668 555 HOH HOH . D 4 HOH A 169 669 662 HOH HOH . D 4 HOH A 170 670 675 HOH HOH . D 4 HOH A 171 671 618 HOH HOH . D 4 HOH A 172 672 469 HOH HOH . D 4 HOH A 173 673 648 HOH HOH . D 4 HOH A 174 674 543 HOH HOH . D 4 HOH A 175 675 490 HOH HOH . D 4 HOH A 176 676 682 HOH HOH . D 4 HOH A 177 677 598 HOH HOH . D 4 HOH A 178 678 657 HOH HOH . D 4 HOH A 179 679 661 HOH HOH . D 4 HOH A 180 680 652 HOH HOH . D 4 HOH A 181 681 597 HOH HOH . D 4 HOH A 182 682 659 HOH HOH . D 4 HOH A 183 683 529 HOH HOH . D 4 HOH A 184 684 687 HOH HOH . D 4 HOH A 185 685 653 HOH HOH . D 4 HOH A 186 686 502 HOH HOH . D 4 HOH A 187 687 694 HOH HOH . D 4 HOH A 188 688 542 HOH HOH . D 4 HOH A 189 689 510 HOH HOH . D 4 HOH A 190 690 552 HOH HOH . D 4 HOH A 191 691 679 HOH HOH . D 4 HOH A 192 692 701 HOH HOH . D 4 HOH A 193 693 703 HOH HOH . D 4 HOH A 194 694 433 HOH HOH . D 4 HOH A 195 695 614 HOH HOH . D 4 HOH A 196 696 630 HOH HOH . D 4 HOH A 197 697 487 HOH HOH . D 4 HOH A 198 698 579 HOH HOH . D 4 HOH A 199 699 483 HOH HOH . D 4 HOH A 200 700 574 HOH HOH . D 4 HOH A 201 701 595 HOH HOH . D 4 HOH A 202 702 690 HOH HOH . D 4 HOH A 203 703 565 HOH HOH . D 4 HOH A 204 704 617 HOH HOH . D 4 HOH A 205 705 567 HOH HOH . D 4 HOH A 206 706 674 HOH HOH . D 4 HOH A 207 707 548 HOH HOH . D 4 HOH A 208 708 670 HOH HOH . D 4 HOH A 209 709 462 HOH HOH . D 4 HOH A 210 710 643 HOH HOH . D 4 HOH A 211 711 471 HOH HOH . D 4 HOH A 212 712 654 HOH HOH . D 4 HOH A 213 713 650 HOH HOH . D 4 HOH A 214 714 523 HOH HOH . D 4 HOH A 215 715 525 HOH HOH . D 4 HOH A 216 716 453 HOH HOH . D 4 HOH A 217 717 663 HOH HOH . D 4 HOH A 218 718 651 HOH HOH . D 4 HOH A 219 719 608 HOH HOH . D 4 HOH A 220 720 681 HOH HOH . D 4 HOH A 221 721 649 HOH HOH . D 4 HOH A 222 722 671 HOH HOH . D 4 HOH A 223 723 642 HOH HOH . D 4 HOH A 224 724 512 HOH HOH . D 4 HOH A 225 725 606 HOH HOH . D 4 HOH A 226 726 596 HOH HOH . D 4 HOH A 227 727 686 HOH HOH . D 4 HOH A 228 728 655 HOH HOH . D 4 HOH A 229 729 518 HOH HOH . D 4 HOH A 230 730 578 HOH HOH . D 4 HOH A 231 731 639 HOH HOH . D 4 HOH A 232 732 473 HOH HOH . D 4 HOH A 233 733 667 HOH HOH . D 4 HOH A 234 734 644 HOH HOH . D 4 HOH A 235 735 645 HOH HOH . D 4 HOH A 236 736 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1ABF . . . C 3 -63.238 6.195 -6.998 0.46 45.02 ? C10 A1ABF 402 A 1 HETATM 2 C C15 A1ABF . . . C 3 -57.665 8.949 -8.48 0.46 34.39 ? C15 A1ABF 402 A 1 HETATM 3 C C02 A1ABF . . . C 3 -55.26 9.376 -8.503 0.46 33.99 ? C02 A1ABF 402 A 1 HETATM 4 C C03 A1ABF . . . C 3 -56.414 8.818 -7.882 0.46 33.46 ? C03 A1ABF 402 A 1 HETATM 5 C C04 A1ABF . . . C 3 -56.307 8.121 -6.67 0.46 33 ? C04 A1ABF 402 A 1 HETATM 6 C C05 A1ABF . . . C 3 -57.437 7.56 -6.035 0.46 33.73 ? C05 A1ABF 402 A 1 HETATM 7 C C06 A1ABF . . . C 3 -58.698 7.706 -6.636 0.46 36.68 ? C06 A1ABF 402 A 1 HETATM 8 C C08 A1ABF . . . C 3 -61.151 7.288 -6.431 0.46 42.32 ? C08 A1ABF 402 A 1 HETATM 9 C C09 A1ABF . . . C 3 -61.896 6.083 -6.594 0.46 43.36 ? C09 A1ABF 402 A 1 HETATM 10 C C11 A1ABF . . . C 3 -63.826 7.458 -7.236 0.46 44.94 ? C11 A1ABF 402 A 1 HETATM 11 C C12 A1ABF . . . C 3 -63.029 8.603 -7.04 0.46 43.26 ? C12 A1ABF 402 A 1 HETATM 12 C C14 A1ABF . . . C 3 -58.797 8.398 -7.859 0.46 37.2 ? C14 A1ABF 402 A 1 HETATM 13 N N01 A1ABF . . . C 3 -54.334 9.824 -9.038 0.46 33.37 ? N01 A1ABF 402 A 1 HETATM 14 N N13 A1ABF . . . C 3 -61.701 8.543 -6.641 0.46 46.05 ? N13 A1ABF 402 A 1 HETATM 15 O O07 A1ABF . . . C 3 -59.821 7.146 -6.009 0.46 39.46 ? O07 A1ABF 402 A 1 HETATM 16 H H101 A1ABF . . . C 3 -63.847 5.294 -7.146 0.46 44.52 ? H101 A1ABF 402 A 1 HETATM 17 H H151 A1ABF . . . C 3 -57.748 9.488 -9.424 0.46 34.82 ? H151 A1ABF 402 A 1 HETATM 18 H H041 A1ABF . . . C 3 -55.316 8.022 -6.214 0.46 33.46 ? H041 A1ABF 402 A 1 HETATM 19 H H051 A1ABF . . . C 3 -57.305 7.037 -5.095 0.46 34.31 ? H051 A1ABF 402 A 1 HETATM 20 H H091 A1ABF . . . C 3 -61.472 5.098 -6.423 0.46 43.53 ? H091 A1ABF 402 A 1 HETATM 21 H H111 A1ABF . . . C 3 -64.869 7.55 -7.551 0.46 44.48 ? H111 A1ABF 402 A 1 HETATM 22 H H121 A1ABF . . . C 3 -63.421 9.613 -7.204 0.46 44.23 ? H121 A1ABF 402 A 1 HETATM 23 H H141 A1ABF . . . C 3 -59.753 8.526 -8.354 0.46 36.27 ? H141 A1ABF 402 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #