data_7GTD # _model_server_result.job_id 0NsK4FHNVboM75gkohofTA _model_server_result.datetime_utc '2024-11-13 07:16:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7GTD # _exptl.entry_id 7GTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GTD _cell.length_a 90.377 _cell.length_b 90.377 _cell.length_c 107.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 360 n n C C2 TRS sing 361 n n C C3 TRS sing 362 n n C N TRS sing 363 n n C1 O1 TRS sing 364 n n C1 H11 TRS sing 365 n n C1 H12 TRS sing 366 n n C2 O2 TRS sing 367 n n C2 H21 TRS sing 368 n n C2 H22 TRS sing 369 n n C3 O3 TRS sing 370 n n C3 H31 TRS sing 371 n n C3 H32 TRS sing 372 n n N HN1 TRS sing 373 n n N HN2 TRS sing 374 n n N HN3 TRS sing 375 n n O1 HO1 TRS sing 376 n n O2 HO2 TRS sing 377 n n O3 HO3 TRS sing 378 n n # _atom_sites.entry_id 7GTD _atom_sites.fract_transf_matrix[1][1] 0.011065 _atom_sites.fract_transf_matrix[1][2] 0.006388 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 A1ABP A 1 402 301 A1ABP LIG . D 4 HOH A 1 501 576 HOH HOH . D 4 HOH A 2 502 632 HOH HOH . D 4 HOH A 3 503 693 HOH HOH . D 4 HOH A 4 504 696 HOH HOH . D 4 HOH A 5 505 673 HOH HOH . D 4 HOH A 6 506 621 HOH HOH . D 4 HOH A 7 507 524 HOH HOH . D 4 HOH A 8 508 464 HOH HOH . D 4 HOH A 9 509 634 HOH HOH . D 4 HOH A 10 510 654 HOH HOH . D 4 HOH A 11 511 517 HOH HOH . D 4 HOH A 12 512 421 HOH HOH . D 4 HOH A 13 513 452 HOH HOH . D 4 HOH A 14 514 688 HOH HOH . D 4 HOH A 15 515 449 HOH HOH . D 4 HOH A 16 516 423 HOH HOH . D 4 HOH A 17 517 482 HOH HOH . D 4 HOH A 18 518 470 HOH HOH . D 4 HOH A 19 519 419 HOH HOH . D 4 HOH A 20 520 589 HOH HOH . D 4 HOH A 21 521 628 HOH HOH . D 4 HOH A 22 522 450 HOH HOH . D 4 HOH A 23 523 704 HOH HOH . D 4 HOH A 24 524 501 HOH HOH . D 4 HOH A 25 525 665 HOH HOH . D 4 HOH A 26 526 605 HOH HOH . D 4 HOH A 27 527 414 HOH HOH . D 4 HOH A 28 528 430 HOH HOH . D 4 HOH A 29 529 491 HOH HOH . D 4 HOH A 30 530 676 HOH HOH . D 4 HOH A 31 531 538 HOH HOH . D 4 HOH A 32 532 569 HOH HOH . D 4 HOH A 33 533 461 HOH HOH . D 4 HOH A 34 534 658 HOH HOH . D 4 HOH A 35 535 625 HOH HOH . D 4 HOH A 36 536 497 HOH HOH . D 4 HOH A 37 537 467 HOH HOH . D 4 HOH A 38 538 434 HOH HOH . D 4 HOH A 39 539 427 HOH HOH . D 4 HOH A 40 540 520 HOH HOH . D 4 HOH A 41 541 664 HOH HOH . D 4 HOH A 42 542 408 HOH HOH . D 4 HOH A 43 543 689 HOH HOH . D 4 HOH A 44 544 448 HOH HOH . D 4 HOH A 45 545 410 HOH HOH . D 4 HOH A 46 546 631 HOH HOH . D 4 HOH A 47 547 619 HOH HOH . D 4 HOH A 48 548 404 HOH HOH . D 4 HOH A 49 549 435 HOH HOH . D 4 HOH A 50 550 627 HOH HOH . D 4 HOH A 51 551 666 HOH HOH . D 4 HOH A 52 552 436 HOH HOH . D 4 HOH A 53 553 481 HOH HOH . D 4 HOH A 54 554 466 HOH HOH . D 4 HOH A 55 555 405 HOH HOH . D 4 HOH A 56 556 411 HOH HOH . D 4 HOH A 57 557 468 HOH HOH . D 4 HOH A 58 558 668 HOH HOH . D 4 HOH A 59 559 402 HOH HOH . D 4 HOH A 60 560 580 HOH HOH . D 4 HOH A 61 561 446 HOH HOH . D 4 HOH A 62 562 566 HOH HOH . D 4 HOH A 63 563 465 HOH HOH . D 4 HOH A 64 564 504 HOH HOH . D 4 HOH A 65 565 413 HOH HOH . D 4 HOH A 66 566 409 HOH HOH . D 4 HOH A 67 567 426 HOH HOH . D 4 HOH A 68 568 437 HOH HOH . D 4 HOH A 69 569 477 HOH HOH . D 4 HOH A 70 570 460 HOH HOH . D 4 HOH A 71 571 493 HOH HOH . D 4 HOH A 72 572 528 HOH HOH . D 4 HOH A 73 573 406 HOH HOH . D 4 HOH A 74 574 431 HOH HOH . D 4 HOH A 75 575 611 HOH HOH . D 4 HOH A 76 576 407 HOH HOH . D 4 HOH A 77 577 479 HOH HOH . D 4 HOH A 78 578 417 HOH HOH . D 4 HOH A 79 579 699 HOH HOH . D 4 HOH A 80 580 635 HOH HOH . D 4 HOH A 81 581 429 HOH HOH . D 4 HOH A 82 582 549 HOH HOH . D 4 HOH A 83 583 683 HOH HOH . D 4 HOH A 84 584 536 HOH HOH . D 4 HOH A 85 585 633 HOH HOH . D 4 HOH A 86 586 412 HOH HOH . D 4 HOH A 87 587 522 HOH HOH . D 4 HOH A 88 588 486 HOH HOH . D 4 HOH A 89 589 533 HOH HOH . D 4 HOH A 90 590 484 HOH HOH . D 4 HOH A 91 591 459 HOH HOH . D 4 HOH A 92 592 440 HOH HOH . D 4 HOH A 93 593 496 HOH HOH . D 4 HOH A 94 594 416 HOH HOH . D 4 HOH A 95 595 415 HOH HOH . D 4 HOH A 96 596 587 HOH HOH . D 4 HOH A 97 597 672 HOH HOH . D 4 HOH A 98 598 695 HOH HOH . D 4 HOH A 99 599 475 HOH HOH . D 4 HOH A 100 600 403 HOH HOH . D 4 HOH A 101 601 505 HOH HOH . D 4 HOH A 102 602 636 HOH HOH . D 4 HOH A 103 603 527 HOH HOH . D 4 HOH A 104 604 503 HOH HOH . D 4 HOH A 105 605 509 HOH HOH . D 4 HOH A 106 606 552 HOH HOH . D 4 HOH A 107 607 447 HOH HOH . D 4 HOH A 108 608 521 HOH HOH . D 4 HOH A 109 609 439 HOH HOH . D 4 HOH A 110 610 556 HOH HOH . D 4 HOH A 111 611 659 HOH HOH . D 4 HOH A 112 612 438 HOH HOH . D 4 HOH A 113 613 554 HOH HOH . D 4 HOH A 114 614 455 HOH HOH . D 4 HOH A 115 615 513 HOH HOH . D 4 HOH A 116 616 594 HOH HOH . D 4 HOH A 117 617 575 HOH HOH . D 4 HOH A 118 618 543 HOH HOH . D 4 HOH A 119 619 463 HOH HOH . D 4 HOH A 120 620 444 HOH HOH . D 4 HOH A 121 621 598 HOH HOH . D 4 HOH A 122 622 424 HOH HOH . D 4 HOH A 123 623 581 HOH HOH . D 4 HOH A 124 624 539 HOH HOH . D 4 HOH A 125 625 474 HOH HOH . D 4 HOH A 126 626 616 HOH HOH . D 4 HOH A 127 627 648 HOH HOH . D 4 HOH A 128 628 684 HOH HOH . D 4 HOH A 129 629 561 HOH HOH . D 4 HOH A 130 630 562 HOH HOH . D 4 HOH A 131 631 489 HOH HOH . D 4 HOH A 132 632 559 HOH HOH . D 4 HOH A 133 633 441 HOH HOH . D 4 HOH A 134 634 700 HOH HOH . D 4 HOH A 135 635 418 HOH HOH . D 4 HOH A 136 636 540 HOH HOH . D 4 HOH A 137 637 702 HOH HOH . D 4 HOH A 138 638 535 HOH HOH . D 4 HOH A 139 639 530 HOH HOH . D 4 HOH A 140 640 451 HOH HOH . D 4 HOH A 141 641 443 HOH HOH . D 4 HOH A 142 642 420 HOH HOH . D 4 HOH A 143 643 457 HOH HOH . D 4 HOH A 144 644 660 HOH HOH . D 4 HOH A 145 645 577 HOH HOH . D 4 HOH A 146 646 638 HOH HOH . D 4 HOH A 147 647 669 HOH HOH . D 4 HOH A 148 648 698 HOH HOH . D 4 HOH A 149 649 563 HOH HOH . D 4 HOH A 150 650 490 HOH HOH . D 4 HOH A 151 651 553 HOH HOH . D 4 HOH A 152 652 526 HOH HOH . D 4 HOH A 153 653 456 HOH HOH . D 4 HOH A 154 654 519 HOH HOH . D 4 HOH A 155 655 454 HOH HOH . D 4 HOH A 156 656 546 HOH HOH . D 4 HOH A 157 657 703 HOH HOH . D 4 HOH A 158 658 618 HOH HOH . D 4 HOH A 159 659 422 HOH HOH . D 4 HOH A 160 660 697 HOH HOH . D 4 HOH A 161 661 442 HOH HOH . D 4 HOH A 162 662 624 HOH HOH . D 4 HOH A 163 663 488 HOH HOH . D 4 HOH A 164 664 675 HOH HOH . D 4 HOH A 165 665 458 HOH HOH . D 4 HOH A 166 666 472 HOH HOH . D 4 HOH A 167 667 602 HOH HOH . D 4 HOH A 168 668 514 HOH HOH . D 4 HOH A 169 669 478 HOH HOH . D 4 HOH A 170 670 661 HOH HOH . D 4 HOH A 171 671 653 HOH HOH . D 4 HOH A 172 672 492 HOH HOH . D 4 HOH A 173 673 652 HOH HOH . D 4 HOH A 174 674 432 HOH HOH . D 4 HOH A 175 675 551 HOH HOH . D 4 HOH A 176 676 498 HOH HOH . D 4 HOH A 177 677 506 HOH HOH . D 4 HOH A 178 678 657 HOH HOH . D 4 HOH A 179 679 469 HOH HOH . D 4 HOH A 180 680 476 HOH HOH . D 4 HOH A 181 681 647 HOH HOH . D 4 HOH A 182 682 646 HOH HOH . D 4 HOH A 183 683 637 HOH HOH . D 4 HOH A 184 684 453 HOH HOH . D 4 HOH A 185 685 529 HOH HOH . D 4 HOH A 186 686 510 HOH HOH . D 4 HOH A 187 687 502 HOH HOH . D 4 HOH A 188 688 555 HOH HOH . D 4 HOH A 189 689 567 HOH HOH . D 4 HOH A 190 690 523 HOH HOH . D 4 HOH A 191 691 701 HOH HOH . D 4 HOH A 192 692 542 HOH HOH . D 4 HOH A 193 693 656 HOH HOH . D 4 HOH A 194 694 565 HOH HOH . D 4 HOH A 195 695 677 HOH HOH . D 4 HOH A 196 696 560 HOH HOH . D 4 HOH A 197 697 685 HOH HOH . D 4 HOH A 198 698 674 HOH HOH . D 4 HOH A 199 699 694 HOH HOH . D 4 HOH A 200 700 597 HOH HOH . D 4 HOH A 201 701 433 HOH HOH . D 4 HOH A 202 702 662 HOH HOH . D 4 HOH A 203 703 643 HOH HOH . D 4 HOH A 204 704 630 HOH HOH . D 4 HOH A 205 705 487 HOH HOH . D 4 HOH A 206 706 541 HOH HOH . D 4 HOH A 207 707 574 HOH HOH . D 4 HOH A 208 708 590 HOH HOH . D 4 HOH A 209 709 483 HOH HOH . D 4 HOH A 210 710 690 HOH HOH . D 4 HOH A 211 711 651 HOH HOH . D 4 HOH A 212 712 462 HOH HOH . D 4 HOH A 213 713 579 HOH HOH . D 4 HOH A 214 714 614 HOH HOH . D 4 HOH A 215 715 670 HOH HOH . D 4 HOH A 216 716 617 HOH HOH . D 4 HOH A 217 717 595 HOH HOH . D 4 HOH A 218 718 650 HOH HOH . D 4 HOH A 219 719 639 HOH HOH . D 4 HOH A 220 720 471 HOH HOH . D 4 HOH A 221 721 663 HOH HOH . D 4 HOH A 222 722 525 HOH HOH . D 4 HOH A 223 723 655 HOH HOH . D 4 HOH A 224 724 649 HOH HOH . D 4 HOH A 225 725 512 HOH HOH . D 4 HOH A 226 726 686 HOH HOH . D 4 HOH A 227 727 681 HOH HOH . D 4 HOH A 228 728 608 HOH HOH . D 4 HOH A 229 729 596 HOH HOH . D 4 HOH A 230 730 548 HOH HOH . D 4 HOH A 231 731 671 HOH HOH . D 4 HOH A 232 732 644 HOH HOH . D 4 HOH A 233 733 518 HOH HOH . D 4 HOH A 234 734 682 HOH HOH . D 4 HOH A 235 735 473 HOH HOH . D 4 HOH A 236 736 667 HOH HOH . D 4 HOH A 237 737 578 HOH HOH . D 4 HOH A 238 738 642 HOH HOH . D 4 HOH A 239 739 679 HOH HOH . D 4 HOH A 240 740 680 HOH HOH . D 4 HOH A 241 741 645 HOH HOH . D 4 HOH A 242 742 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 21.84 -40.82 -22.843 1 58.04 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 21.957 -39.722 -21.772 1 68.65 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 21.04 -40.352 -24.058 1 62.21 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 21.136 -42.03 -22.286 1 48.22 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 23.228 -41.259 -23.28 1 56.16 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 23.293 -39.212 -21.617 1 69.25 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 21.623 -39.224 -24.683 1 69.87 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 21.818 -42.634 -21.18 1 36.77 ? O3 TRS 401 A 1 HETATM 9 H H11 TRS . . . B 2 21.653 -40.082 -20.914 1 65.79 ? H11 TRS 401 A 1 HETATM 10 H H12 TRS . . . B 2 21.368 -38.988 -22.01 1 66.06 ? H12 TRS 401 A 1 HETATM 11 H H21 TRS . . . B 2 20.132 -40.127 -23.774 1 62.91 ? H21 TRS 401 A 1 HETATM 12 H H22 TRS . . . B 2 20.982 -41.084 -24.705 1 62.86 ? H22 TRS 401 A 1 HETATM 13 H H31 TRS . . . B 2 21.037 -42.694 -22.999 1 47.32 ? H31 TRS 401 A 1 HETATM 14 H H32 TRS . . . B 2 20.238 -41.766 -21.998 1 47.26 ? H32 TRS 401 A 1 HETATM 15 H HN1 TRS . . . B 2 23.298 -42.164 -23.286 1 56.64 ? HN1 TRS 401 A 1 HETATM 16 H HN2 TRS . . . B 2 23.86 -40.93 -22.717 1 56.74 ? HN2 TRS 401 A 1 HETATM 17 H HN3 TRS . . . B 2 23.412 -40.957 -24.117 1 56.73 ? HN3 TRS 401 A 1 HETATM 18 H HO1 TRS . . . B 2 23.44 -38.561 -20.966 1 65.32 ? HO1 TRS 401 A 1 HETATM 19 H HO2 TRS . . . B 2 21.546 -38.704 -25.247 1 84.37 ? HO2 TRS 401 A 1 HETATM 20 H HO3 TRS . . . B 2 22.565 -42.256 -21.058 1 40.26 ? HO3 TRS 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #