data_7GTE # _model_server_result.job_id 2jzBPoG0G6tjenfAMfJCCQ _model_server_result.datetime_utc '2024-11-25 08:10:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GTE # _exptl.entry_id 7GTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.16 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-(trifluoromethyl)-1,4-diazepane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GTE _cell.length_a 90.413 _cell.length_b 90.413 _cell.length_c 107.001 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H11 F3 N2' _chem_comp.formula_weight 168.16 _chem_comp.id A1ABO _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-(trifluoromethyl)-1,4-diazepane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 A1ABO sing 1 n n C10 N09 A1ABO sing 2 n n C11 C05 A1ABO sing 3 n n N09 C08 A1ABO sing 4 n n C05 N06 A1ABO sing 5 n n C05 C02 A1ABO sing 6 n n F04 C02 A1ABO sing 7 n n C08 C07 A1ABO sing 8 n n N06 C07 A1ABO sing 9 n n C02 F03 A1ABO sing 10 n n C02 F01 A1ABO sing 11 n n C10 H1 A1ABO sing 12 n n C10 H101 A1ABO sing 13 n n C05 H2 A1ABO sing 14 n n C07 H072 A1ABO sing 15 n n C07 H071 A1ABO sing 16 n n C08 H082 A1ABO sing 17 n n C08 H081 A1ABO sing 18 n n C11 H3 A1ABO sing 19 n n C11 H111 A1ABO sing 20 n n N06 H4 A1ABO sing 21 n n N09 H091 A1ABO sing 22 n n # _atom_sites.entry_id 7GTE _atom_sites.fract_transf_matrix[1][1] 0.01106 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 A1ABO A 1 402 301 A1ABO LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 678 HOH HOH . D 4 HOH A 4 504 696 HOH HOH . D 4 HOH A 5 505 621 HOH HOH . D 4 HOH A 6 506 634 HOH HOH . D 4 HOH A 7 507 464 HOH HOH . D 4 HOH A 8 508 673 HOH HOH . D 4 HOH A 9 509 688 HOH HOH . D 4 HOH A 10 510 589 HOH HOH . D 4 HOH A 11 511 482 HOH HOH . D 4 HOH A 12 512 524 HOH HOH . D 4 HOH A 13 513 421 HOH HOH . D 4 HOH A 14 514 470 HOH HOH . D 4 HOH A 15 515 419 HOH HOH . D 4 HOH A 16 516 423 HOH HOH . D 4 HOH A 17 517 414 HOH HOH . D 4 HOH A 18 518 450 HOH HOH . D 4 HOH A 19 519 569 HOH HOH . D 4 HOH A 20 520 628 HOH HOH . D 4 HOH A 21 521 704 HOH HOH . D 4 HOH A 22 522 517 HOH HOH . D 4 HOH A 23 523 538 HOH HOH . D 4 HOH A 24 524 590 HOH HOH . D 4 HOH A 25 525 452 HOH HOH . D 4 HOH A 26 526 689 HOH HOH . D 4 HOH A 27 527 528 HOH HOH . D 4 HOH A 28 528 665 HOH HOH . D 4 HOH A 29 529 676 HOH HOH . D 4 HOH A 30 530 448 HOH HOH . D 4 HOH A 31 531 436 HOH HOH . D 4 HOH A 32 532 501 HOH HOH . D 4 HOH A 33 533 461 HOH HOH . D 4 HOH A 34 534 411 HOH HOH . D 4 HOH A 35 535 427 HOH HOH . D 4 HOH A 36 536 408 HOH HOH . D 4 HOH A 37 537 666 HOH HOH . D 4 HOH A 38 538 611 HOH HOH . D 4 HOH A 39 539 491 HOH HOH . D 4 HOH A 40 540 404 HOH HOH . D 4 HOH A 41 541 497 HOH HOH . D 4 HOH A 42 542 699 HOH HOH . D 4 HOH A 43 543 481 HOH HOH . D 4 HOH A 44 544 446 HOH HOH . D 4 HOH A 45 545 465 HOH HOH . D 4 HOH A 46 546 467 HOH HOH . D 4 HOH A 47 547 668 HOH HOH . D 4 HOH A 48 548 693 HOH HOH . D 4 HOH A 49 549 409 HOH HOH . D 4 HOH A 50 550 698 HOH HOH . D 4 HOH A 51 551 684 HOH HOH . D 4 HOH A 52 552 664 HOH HOH . D 4 HOH A 53 553 426 HOH HOH . D 4 HOH A 54 554 466 HOH HOH . D 4 HOH A 55 555 468 HOH HOH . D 4 HOH A 56 556 407 HOH HOH . D 4 HOH A 57 557 434 HOH HOH . D 4 HOH A 58 558 619 HOH HOH . D 4 HOH A 59 559 658 HOH HOH . D 4 HOH A 60 560 410 HOH HOH . D 4 HOH A 61 561 431 HOH HOH . D 4 HOH A 62 562 435 HOH HOH . D 4 HOH A 63 563 493 HOH HOH . D 4 HOH A 64 564 413 HOH HOH . D 4 HOH A 65 565 536 HOH HOH . D 4 HOH A 66 566 449 HOH HOH . D 4 HOH A 67 567 406 HOH HOH . D 4 HOH A 68 568 605 HOH HOH . D 4 HOH A 69 569 412 HOH HOH . D 4 HOH A 70 570 625 HOH HOH . D 4 HOH A 71 571 504 HOH HOH . D 4 HOH A 72 572 581 HOH HOH . D 4 HOH A 73 573 520 HOH HOH . D 4 HOH A 74 574 460 HOH HOH . D 4 HOH A 75 575 417 HOH HOH . D 4 HOH A 76 576 405 HOH HOH . D 4 HOH A 77 577 685 HOH HOH . D 4 HOH A 78 578 474 HOH HOH . D 4 HOH A 79 579 429 HOH HOH . D 4 HOH A 80 580 594 HOH HOH . D 4 HOH A 81 581 631 HOH HOH . D 4 HOH A 82 582 509 HOH HOH . D 4 HOH A 83 583 695 HOH HOH . D 4 HOH A 84 584 587 HOH HOH . D 4 HOH A 85 585 669 HOH HOH . D 4 HOH A 86 586 479 HOH HOH . D 4 HOH A 87 587 522 HOH HOH . D 4 HOH A 88 588 416 HOH HOH . D 4 HOH A 89 589 402 HOH HOH . D 4 HOH A 90 590 430 HOH HOH . D 4 HOH A 91 591 627 HOH HOH . D 4 HOH A 92 592 437 HOH HOH . D 4 HOH A 93 593 677 HOH HOH . D 4 HOH A 94 594 484 HOH HOH . D 4 HOH A 95 595 440 HOH HOH . D 4 HOH A 96 596 672 HOH HOH . D 4 HOH A 97 597 415 HOH HOH . D 4 HOH A 98 598 637 HOH HOH . D 4 HOH A 99 599 526 HOH HOH . D 4 HOH A 100 600 486 HOH HOH . D 4 HOH A 101 601 403 HOH HOH . D 4 HOH A 102 602 638 HOH HOH . D 4 HOH A 103 603 519 HOH HOH . D 4 HOH A 104 604 616 HOH HOH . D 4 HOH A 105 605 496 HOH HOH . D 4 HOH A 106 606 577 HOH HOH . D 4 HOH A 107 607 575 HOH HOH . D 4 HOH A 108 608 443 HOH HOH . D 4 HOH A 109 609 580 HOH HOH . D 4 HOH A 110 610 444 HOH HOH . D 4 HOH A 111 611 513 HOH HOH . D 4 HOH A 112 612 459 HOH HOH . D 4 HOH A 113 613 507 HOH HOH . D 4 HOH A 114 614 439 HOH HOH . D 4 HOH A 115 615 441 HOH HOH . D 4 HOH A 116 616 475 HOH HOH . D 4 HOH A 117 617 424 HOH HOH . D 4 HOH A 118 618 549 HOH HOH . D 4 HOH A 119 619 636 HOH HOH . D 4 HOH A 120 620 635 HOH HOH . D 4 HOH A 121 621 505 HOH HOH . D 4 HOH A 122 622 702 HOH HOH . D 4 HOH A 123 623 703 HOH HOH . D 4 HOH A 124 624 533 HOH HOH . D 4 HOH A 125 625 700 HOH HOH . D 4 HOH A 126 626 457 HOH HOH . D 4 HOH A 127 627 447 HOH HOH . D 4 HOH A 128 628 527 HOH HOH . D 4 HOH A 129 629 535 HOH HOH . D 4 HOH A 130 630 546 HOH HOH . D 4 HOH A 131 631 554 HOH HOH . D 4 HOH A 132 632 563 HOH HOH . D 4 HOH A 133 633 561 HOH HOH . D 4 HOH A 134 634 418 HOH HOH . D 4 HOH A 135 635 420 HOH HOH . D 4 HOH A 136 636 657 HOH HOH . D 4 HOH A 137 637 463 HOH HOH . D 4 HOH A 138 638 543 HOH HOH . D 4 HOH A 139 639 455 HOH HOH . D 4 HOH A 140 640 503 HOH HOH . D 4 HOH A 141 641 660 HOH HOH . D 4 HOH A 142 642 562 HOH HOH . D 4 HOH A 143 643 451 HOH HOH . D 4 HOH A 144 644 552 HOH HOH . D 4 HOH A 145 645 683 HOH HOH . D 4 HOH A 146 646 422 HOH HOH . D 4 HOH A 147 647 530 HOH HOH . D 4 HOH A 148 648 697 HOH HOH . D 4 HOH A 149 649 559 HOH HOH . D 4 HOH A 150 650 454 HOH HOH . D 4 HOH A 151 651 539 HOH HOH . D 4 HOH A 152 652 489 HOH HOH . D 4 HOH A 153 653 456 HOH HOH . D 4 HOH A 154 654 675 HOH HOH . D 4 HOH A 155 655 555 HOH HOH . D 4 HOH A 156 656 521 HOH HOH . D 4 HOH A 157 657 602 HOH HOH . D 4 HOH A 158 658 648 HOH HOH . D 4 HOH A 159 659 458 HOH HOH . D 4 HOH A 160 660 624 HOH HOH . D 4 HOH A 161 661 506 HOH HOH . D 4 HOH A 162 662 540 HOH HOH . D 4 HOH A 163 663 488 HOH HOH . D 4 HOH A 164 664 478 HOH HOH . D 4 HOH A 165 665 476 HOH HOH . D 4 HOH A 166 666 560 HOH HOH . D 4 HOH A 167 667 514 HOH HOH . D 4 HOH A 168 668 618 HOH HOH . D 4 HOH A 169 669 442 HOH HOH . D 4 HOH A 170 670 553 HOH HOH . D 4 HOH A 171 671 510 HOH HOH . D 4 HOH A 172 672 492 HOH HOH . D 4 HOH A 173 673 472 HOH HOH . D 4 HOH A 174 674 661 HOH HOH . D 4 HOH A 175 675 498 HOH HOH . D 4 HOH A 176 676 477 HOH HOH . D 4 HOH A 177 677 551 HOH HOH . D 4 HOH A 178 678 647 HOH HOH . D 4 HOH A 179 679 490 HOH HOH . D 4 HOH A 180 680 598 HOH HOH . D 4 HOH A 181 681 469 HOH HOH . D 4 HOH A 182 682 659 HOH HOH . D 4 HOH A 183 683 502 HOH HOH . D 4 HOH A 184 684 653 HOH HOH . D 4 HOH A 185 685 462 HOH HOH . D 4 HOH A 186 686 687 HOH HOH . D 4 HOH A 187 687 542 HOH HOH . D 4 HOH A 188 688 453 HOH HOH . D 4 HOH A 189 689 565 HOH HOH . D 4 HOH A 190 690 529 HOH HOH . D 4 HOH A 191 691 694 HOH HOH . D 4 HOH A 192 692 701 HOH HOH . D 4 HOH A 193 693 597 HOH HOH . D 4 HOH A 194 694 652 HOH HOH . D 4 HOH A 195 695 679 HOH HOH . D 4 HOH A 196 696 662 HOH HOH . D 4 HOH A 197 697 433 HOH HOH . D 4 HOH A 198 698 614 HOH HOH . D 4 HOH A 199 699 630 HOH HOH . D 4 HOH A 200 700 487 HOH HOH . D 4 HOH A 201 701 674 HOH HOH . D 4 HOH A 202 702 579 HOH HOH . D 4 HOH A 203 703 567 HOH HOH . D 4 HOH A 204 704 483 HOH HOH . D 4 HOH A 205 705 646 HOH HOH . D 4 HOH A 206 706 656 HOH HOH . D 4 HOH A 207 707 574 HOH HOH . D 4 HOH A 208 708 595 HOH HOH . D 4 HOH A 209 709 670 HOH HOH . D 4 HOH A 210 710 617 HOH HOH . D 4 HOH A 211 711 654 HOH HOH . D 4 HOH A 212 712 682 HOH HOH . D 4 HOH A 213 713 650 HOH HOH . D 4 HOH A 214 714 639 HOH HOH . D 4 HOH A 215 715 642 HOH HOH . D 4 HOH A 216 716 663 HOH HOH . D 4 HOH A 217 717 690 HOH HOH . D 4 HOH A 218 718 649 HOH HOH . D 4 HOH A 219 719 471 HOH HOH . D 4 HOH A 220 720 651 HOH HOH . D 4 HOH A 221 721 525 HOH HOH . D 4 HOH A 222 722 512 HOH HOH . D 4 HOH A 223 723 606 HOH HOH . D 4 HOH A 224 724 686 HOH HOH . D 4 HOH A 225 725 548 HOH HOH . D 4 HOH A 226 726 681 HOH HOH . D 4 HOH A 227 727 518 HOH HOH . D 4 HOH A 228 728 671 HOH HOH . D 4 HOH A 229 729 596 HOH HOH . D 4 HOH A 230 730 655 HOH HOH . D 4 HOH A 231 731 608 HOH HOH . D 4 HOH A 232 732 473 HOH HOH . D 4 HOH A 233 733 667 HOH HOH . D 4 HOH A 234 734 578 HOH HOH . D 4 HOH A 235 735 644 HOH HOH . D 4 HOH A 236 736 645 HOH HOH . D 4 HOH A 237 737 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1ABO . . . C 3 23.867 -25.552 -26.988 0.44 60.85 ? C10 A1ABO 402 A 1 HETATM 2 C C02 A1ABO . . . C 3 22.348 -23.064 -24.824 0.44 57.2 ? C02 A1ABO 402 A 1 HETATM 3 C C05 A1ABO . . . C 3 23.58 -23.561 -25.673 0.44 56.9 ? C05 A1ABO 402 A 1 HETATM 4 C C07 A1ABO . . . C 3 25.116 -24.834 -24.326 0.44 51.84 ? C07 A1ABO 402 A 1 HETATM 5 C C08 A1ABO . . . C 3 25.537 -26.019 -25.174 0.44 54.15 ? C08 A1ABO 402 A 1 HETATM 6 C C11 A1ABO . . . C 3 23.294 -24.369 -26.846 0.44 60.73 ? C11 A1ABO 402 A 1 HETATM 7 F F01 A1ABO . . . C 3 22.084 -23.788 -23.702 0.44 49.89 ? F01 A1ABO 402 A 1 HETATM 8 F F03 A1ABO . . . C 3 22.618 -21.805 -24.363 0.44 57.87 ? F03 A1ABO 402 A 1 HETATM 9 F F04 A1ABO . . . C 3 21.225 -22.944 -25.495 0.44 57.55 ? F04 A1ABO 402 A 1 HETATM 10 N N06 A1ABO . . . C 3 24.603 -23.604 -24.947 0.44 53.37 ? N06 A1ABO 402 A 1 HETATM 11 N N09 A1ABO . . . C 3 25.142 -25.942 -26.551 0.44 60.16 ? N09 A1ABO 402 A 1 HETATM 12 H H1 A1ABO . . . C 3 23.27 -26.452 -27.24 0.44 60.61 ? H1 A1ABO 402 A 1 HETATM 13 H H072 A1ABO . . . C 3 25.999 -24.524 -23.741 0.44 52.66 ? H072 A1ABO 402 A 1 HETATM 14 H H071 A1ABO . . . C 3 24.336 -25.124 -23.59 0.44 52.71 ? H071 A1ABO 402 A 1 HETATM 15 H H082 A1ABO . . . C 3 26.644 -26.171 -25.149 0.44 54.87 ? H082 A1ABO 402 A 1 HETATM 16 H H081 A1ABO . . . C 3 25.145 -26.965 -24.726 0.44 54.86 ? H081 A1ABO 402 A 1 HETATM 17 H H111 A1ABO . . . C 3 22.76 -23.907 -27.68 0.44 59.82 ? H111 A1ABO 402 A 1 HETATM 18 H H091 A1ABO . . . C 3 25.804 -26.176 -27.252 0.44 58.74 ? H091 A1ABO 402 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 18 #