data_7GTV # _model_server_result.job_id JdWQOiJtR449MspODnaQDA _model_server_result.datetime_utc '2024-12-12 14:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7GTV # _exptl.entry_id 7GTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GTV _cell.length_a 89.842 _cell.length_b 89.842 _cell.length_c 106.442 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 7GTV _atom_sites.fract_transf_matrix[1][1] 0.011131 _atom_sites.fract_transf_matrix[1][2] 0.006426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 UJQ A 1 402 301 UJQ LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 474 HOH HOH . D 4 HOH A 4 504 501 HOH HOH . D 4 HOH A 5 505 434 HOH HOH . D 4 HOH A 6 506 673 HOH HOH . D 4 HOH A 7 507 685 HOH HOH . D 4 HOH A 8 508 698 HOH HOH . D 4 HOH A 9 509 696 HOH HOH . D 4 HOH A 10 510 566 HOH HOH . D 4 HOH A 11 511 482 HOH HOH . D 4 HOH A 12 512 569 HOH HOH . D 4 HOH A 13 513 514 HOH HOH . D 4 HOH A 14 514 419 HOH HOH . D 4 HOH A 15 515 689 HOH HOH . D 4 HOH A 16 516 634 HOH HOH . D 4 HOH A 17 517 491 HOH HOH . D 4 HOH A 18 518 662 HOH HOH . D 4 HOH A 19 519 536 HOH HOH . D 4 HOH A 20 520 621 HOH HOH . D 4 HOH A 21 521 504 HOH HOH . D 4 HOH A 22 522 688 HOH HOH . D 4 HOH A 23 523 423 HOH HOH . D 4 HOH A 24 524 464 HOH HOH . D 4 HOH A 25 525 627 HOH HOH . D 4 HOH A 26 526 470 HOH HOH . D 4 HOH A 27 527 509 HOH HOH . D 4 HOH A 28 528 448 HOH HOH . D 4 HOH A 29 529 417 HOH HOH . D 4 HOH A 30 530 443 HOH HOH . D 4 HOH A 31 531 409 HOH HOH . D 4 HOH A 32 532 465 HOH HOH . D 4 HOH A 33 533 507 HOH HOH . D 4 HOH A 34 534 590 HOH HOH . D 4 HOH A 35 535 660 HOH HOH . D 4 HOH A 36 536 628 HOH HOH . D 4 HOH A 37 537 421 HOH HOH . D 4 HOH A 38 538 519 HOH HOH . D 4 HOH A 39 539 441 HOH HOH . D 4 HOH A 40 540 577 HOH HOH . D 4 HOH A 41 541 429 HOH HOH . D 4 HOH A 42 542 402 HOH HOH . D 4 HOH A 43 543 524 HOH HOH . D 4 HOH A 44 544 461 HOH HOH . D 4 HOH A 45 545 404 HOH HOH . D 4 HOH A 46 546 406 HOH HOH . D 4 HOH A 47 547 697 HOH HOH . D 4 HOH A 48 548 631 HOH HOH . D 4 HOH A 49 549 435 HOH HOH . D 4 HOH A 50 550 405 HOH HOH . D 4 HOH A 51 551 587 HOH HOH . D 4 HOH A 52 552 431 HOH HOH . D 4 HOH A 53 553 664 HOH HOH . D 4 HOH A 54 554 654 HOH HOH . D 4 HOH A 55 555 704 HOH HOH . D 4 HOH A 56 556 413 HOH HOH . D 4 HOH A 57 557 658 HOH HOH . D 4 HOH A 58 558 493 HOH HOH . D 4 HOH A 59 559 666 HOH HOH . D 4 HOH A 60 560 449 HOH HOH . D 4 HOH A 61 561 693 HOH HOH . D 4 HOH A 62 562 528 HOH HOH . D 4 HOH A 63 563 479 HOH HOH . D 4 HOH A 64 564 426 HOH HOH . D 4 HOH A 65 565 619 HOH HOH . D 4 HOH A 66 566 414 HOH HOH . D 4 HOH A 67 567 602 HOH HOH . D 4 HOH A 68 568 684 HOH HOH . D 4 HOH A 69 569 549 HOH HOH . D 4 HOH A 70 570 407 HOH HOH . D 4 HOH A 71 571 451 HOH HOH . D 4 HOH A 72 572 412 HOH HOH . D 4 HOH A 73 573 446 HOH HOH . D 4 HOH A 74 574 430 HOH HOH . D 4 HOH A 75 575 447 HOH HOH . D 4 HOH A 76 576 605 HOH HOH . D 4 HOH A 77 577 683 HOH HOH . D 4 HOH A 78 578 581 HOH HOH . D 4 HOH A 79 579 411 HOH HOH . D 4 HOH A 80 580 503 HOH HOH . D 4 HOH A 81 581 559 HOH HOH . D 4 HOH A 82 582 437 HOH HOH . D 4 HOH A 83 583 625 HOH HOH . D 4 HOH A 84 584 410 HOH HOH . D 4 HOH A 85 585 466 HOH HOH . D 4 HOH A 86 586 677 HOH HOH . D 4 HOH A 87 587 580 HOH HOH . D 4 HOH A 88 588 540 HOH HOH . D 4 HOH A 89 589 475 HOH HOH . D 4 HOH A 90 590 481 HOH HOH . D 4 HOH A 91 591 635 HOH HOH . D 4 HOH A 92 592 539 HOH HOH . D 4 HOH A 93 593 483 HOH HOH . D 4 HOH A 94 594 408 HOH HOH . D 4 HOH A 95 595 415 HOH HOH . D 4 HOH A 96 596 497 HOH HOH . D 4 HOH A 97 597 444 HOH HOH . D 4 HOH A 98 598 455 HOH HOH . D 4 HOH A 99 599 468 HOH HOH . D 4 HOH A 100 600 450 HOH HOH . D 4 HOH A 101 601 489 HOH HOH . D 4 HOH A 102 602 418 HOH HOH . D 4 HOH A 103 603 699 HOH HOH . D 4 HOH A 104 604 522 HOH HOH . D 4 HOH A 105 605 575 HOH HOH . D 4 HOH A 106 606 403 HOH HOH . D 4 HOH A 107 607 436 HOH HOH . D 4 HOH A 108 608 533 HOH HOH . D 4 HOH A 109 609 420 HOH HOH . D 4 HOH A 110 610 452 HOH HOH . D 4 HOH A 111 611 703 HOH HOH . D 4 HOH A 112 612 554 HOH HOH . D 4 HOH A 113 613 424 HOH HOH . D 4 HOH A 114 614 695 HOH HOH . D 4 HOH A 115 615 553 HOH HOH . D 4 HOH A 116 616 477 HOH HOH . D 4 HOH A 117 617 467 HOH HOH . D 4 HOH A 118 618 535 HOH HOH . D 4 HOH A 119 619 668 HOH HOH . D 4 HOH A 120 620 459 HOH HOH . D 4 HOH A 121 621 440 HOH HOH . D 4 HOH A 122 622 561 HOH HOH . D 4 HOH A 123 623 439 HOH HOH . D 4 HOH A 124 624 546 HOH HOH . D 4 HOH A 125 625 700 HOH HOH . D 4 HOH A 126 626 556 HOH HOH . D 4 HOH A 127 627 427 HOH HOH . D 4 HOH A 128 628 488 HOH HOH . D 4 HOH A 129 629 523 HOH HOH . D 4 HOH A 130 630 416 HOH HOH . D 4 HOH A 131 631 486 HOH HOH . D 4 HOH A 132 632 636 HOH HOH . D 4 HOH A 133 633 526 HOH HOH . D 4 HOH A 134 634 442 HOH HOH . D 4 HOH A 135 635 478 HOH HOH . D 4 HOH A 136 636 492 HOH HOH . D 4 HOH A 137 637 552 HOH HOH . D 4 HOH A 138 638 675 HOH HOH . D 4 HOH A 139 639 458 HOH HOH . D 4 HOH A 140 640 505 HOH HOH . D 4 HOH A 141 641 422 HOH HOH . D 4 HOH A 142 642 543 HOH HOH . D 4 HOH A 143 643 463 HOH HOH . D 4 HOH A 144 644 648 HOH HOH . D 4 HOH A 145 645 502 HOH HOH . D 4 HOH A 146 646 657 HOH HOH . D 4 HOH A 147 647 672 HOH HOH . D 4 HOH A 148 648 456 HOH HOH . D 4 HOH A 149 649 472 HOH HOH . D 4 HOH A 150 650 513 HOH HOH . D 4 HOH A 151 651 438 HOH HOH . D 4 HOH A 152 652 484 HOH HOH . D 4 HOH A 153 653 551 HOH HOH . D 4 HOH A 154 654 496 HOH HOH . D 4 HOH A 155 655 562 HOH HOH . D 4 HOH A 156 656 669 HOH HOH . D 4 HOH A 157 657 476 HOH HOH . D 4 HOH A 158 658 454 HOH HOH . D 4 HOH A 159 659 563 HOH HOH . D 4 HOH A 160 660 506 HOH HOH . D 4 HOH A 161 661 638 HOH HOH . D 4 HOH A 162 662 702 HOH HOH . D 4 HOH A 163 663 624 HOH HOH . D 4 HOH A 164 664 633 HOH HOH . D 4 HOH A 165 665 457 HOH HOH . D 4 HOH A 166 666 510 HOH HOH . D 4 HOH A 167 667 498 HOH HOH . D 4 HOH A 168 668 646 HOH HOH . D 4 HOH A 169 669 597 HOH HOH . D 4 HOH A 170 670 618 HOH HOH . D 4 HOH A 171 671 560 HOH HOH . D 4 HOH A 172 672 656 HOH HOH . D 4 HOH A 173 673 567 HOH HOH . D 4 HOH A 174 674 594 HOH HOH . D 4 HOH A 175 675 565 HOH HOH . D 4 HOH A 176 676 687 HOH HOH . D 4 HOH A 177 677 665 HOH HOH . D 4 HOH A 178 678 690 HOH HOH . D 4 HOH A 179 679 589 HOH HOH . D 4 HOH A 180 680 694 HOH HOH . D 4 HOH A 181 681 538 HOH HOH . D 4 HOH A 182 682 678 HOH HOH . D 4 HOH A 183 683 555 HOH HOH . D 4 HOH A 184 684 701 HOH HOH . D 4 HOH A 185 685 579 HOH HOH . D 4 HOH A 186 686 647 HOH HOH . D 4 HOH A 187 687 595 HOH HOH . D 4 HOH A 188 688 517 HOH HOH . D 4 HOH A 189 689 574 HOH HOH . D 4 HOH A 190 690 541 HOH HOH . D 4 HOH A 191 691 433 HOH HOH . D 4 HOH A 192 692 653 HOH HOH . D 4 HOH A 193 693 617 HOH HOH . D 4 HOH A 194 694 674 HOH HOH . D 4 HOH A 195 695 630 HOH HOH . D 4 HOH A 196 696 676 HOH HOH . D 4 HOH A 197 697 598 HOH HOH . D 4 HOH A 198 698 529 HOH HOH . D 4 HOH A 199 699 614 HOH HOH . D 4 HOH A 200 700 487 HOH HOH . D 4 HOH A 201 701 670 HOH HOH . D 4 HOH A 202 702 652 HOH HOH . D 4 HOH A 203 703 512 HOH HOH . D 4 HOH A 204 704 650 HOH HOH . D 4 HOH A 205 705 663 HOH HOH . D 4 HOH A 206 706 527 HOH HOH . D 4 HOH A 207 707 649 HOH HOH . D 4 HOH A 208 708 655 HOH HOH . D 4 HOH A 209 709 471 HOH HOH . D 4 HOH A 210 710 661 HOH HOH . D 4 HOH A 211 711 651 HOH HOH . D 4 HOH A 212 712 679 HOH HOH . D 4 HOH A 213 713 645 HOH HOH . D 4 HOH A 214 714 639 HOH HOH . D 4 HOH A 215 715 606 HOH HOH . D 4 HOH A 216 716 686 HOH HOH . D 4 HOH A 217 717 525 HOH HOH . D 4 HOH A 218 718 671 HOH HOH . D 4 HOH A 219 719 681 HOH HOH . D 4 HOH A 220 720 642 HOH HOH . D 4 HOH A 221 721 682 HOH HOH . D 4 HOH A 222 722 518 HOH HOH . D 4 HOH A 223 723 473 HOH HOH . D 4 HOH A 224 724 596 HOH HOH . D 4 HOH A 225 725 644 HOH HOH . D 4 HOH A 226 726 578 HOH HOH . D 4 HOH A 227 727 462 HOH HOH . D 4 HOH A 228 728 667 HOH HOH . D 4 HOH A 229 729 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -44.203 -1.159 -4.991 1 49.36 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 -45.001 -0.744 -3.742 1 46.9 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 -45.047 -1.227 -6.271 1 51.78 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 -43.579 -2.491 -4.739 1 26.25 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 -43.014 -0.243 -5.206 1 42.68 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 -44.935 0.668 -3.5 1 46.28 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 -46.214 -0.42 -6.174 1 56.86 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 -42.801 -2.525 -3.48 1 32 ? O3 TRS 401 A 1 HETATM 9 H H11 TRS . . . B 2 -44.64 -1.215 -2.963 1 47.14 ? H11 TRS 401 A 1 HETATM 10 H H12 TRS . . . B 2 -45.934 -1.013 -3.848 1 47.3 ? H12 TRS 401 A 1 HETATM 11 H H21 TRS . . . B 2 -45.308 -2.155 -6.439 1 52.19 ? H21 TRS 401 A 1 HETATM 12 H H22 TRS . . . B 2 -44.509 -0.92 -7.031 1 52.27 ? H22 TRS 401 A 1 HETATM 13 H H31 TRS . . . B 2 -42.993 -2.72 -5.489 1 32.03 ? H31 TRS 401 A 1 HETATM 14 H H32 TRS . . . B 2 -44.286 -3.167 -4.694 1 32.04 ? H32 TRS 401 A 1 HETATM 15 H HN1 TRS . . . B 2 -42.287 -0.704 -5.502 1 44.48 ? HN1 TRS 401 A 1 HETATM 16 H HN2 TRS . . . B 2 -42.787 0.172 -4.429 1 44.57 ? HN2 TRS 401 A 1 HETATM 17 H HN3 TRS . . . B 2 -43.206 0.399 -5.82 1 44.65 ? HN3 TRS 401 A 1 HETATM 18 H HO1 TRS . . . B 2 -45.336 1.043 -2.882 1 31.73 ? HO1 TRS 401 A 1 HETATM 19 H HO2 TRS . . . B 2 -46.674 -0.175 -6.61 1 36.89 ? HO2 TRS 401 A 1 HETATM 20 H HO3 TRS . . . B 2 -42.26 -1.869 -3.467 1 30.32 ? HO3 TRS 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #