data_7GTV # _model_server_result.job_id pgWI-e8bc_y5sY02rzLWxw _model_server_result.datetime_utc '2024-12-04 19:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GTV # _exptl.entry_id 7GTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.227 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '9~{H}-xanthene-9-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GTV _cell.length_a 89.842 _cell.length_b 89.842 _cell.length_c 106.442 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H10 O3' _chem_comp.formula_weight 226.227 _chem_comp.id UJQ _chem_comp.mon_nstd_flag . _chem_comp.name '9~{H}-xanthene-9-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C08 UJQ doub 377 n y C07 C06 UJQ sing 378 n y C08 C09 UJQ sing 379 n y C17 C16 UJQ doub 380 n y C17 C12 UJQ sing 381 n y O11 C06 UJQ sing 382 n n O11 C12 UJQ sing 383 n n C06 C05 UJQ doub 384 n y C16 C15 UJQ sing 385 n y C12 C13 UJQ doub 386 n y C09 C10 UJQ doub 387 n y C05 C10 UJQ sing 388 n y C05 C04 UJQ sing 389 n n C15 C14 UJQ doub 390 n y C13 C14 UJQ sing 391 n y C13 C04 UJQ sing 392 n n C04 C02 UJQ sing 393 n n C02 O03 UJQ doub 394 n n C02 O01 UJQ sing 395 n n C10 H1 UJQ sing 396 n n C15 H2 UJQ sing 397 n n C17 H3 UJQ sing 398 n n C04 H4 UJQ sing 399 n n C07 H5 UJQ sing 400 n n C08 H6 UJQ sing 401 n n C09 H7 UJQ sing 402 n n C14 H8 UJQ sing 403 n n C16 H9 UJQ sing 404 n n O01 H10 UJQ sing 405 n n # _atom_sites.entry_id 7GTV _atom_sites.fract_transf_matrix[1][1] 0.011131 _atom_sites.fract_transf_matrix[1][2] 0.006426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 UJQ A 1 402 301 UJQ LIG . D 4 HOH A 1 501 692 HOH HOH . D 4 HOH A 2 502 576 HOH HOH . D 4 HOH A 3 503 474 HOH HOH . D 4 HOH A 4 504 501 HOH HOH . D 4 HOH A 5 505 434 HOH HOH . D 4 HOH A 6 506 673 HOH HOH . D 4 HOH A 7 507 685 HOH HOH . D 4 HOH A 8 508 698 HOH HOH . D 4 HOH A 9 509 696 HOH HOH . D 4 HOH A 10 510 566 HOH HOH . D 4 HOH A 11 511 482 HOH HOH . D 4 HOH A 12 512 569 HOH HOH . D 4 HOH A 13 513 514 HOH HOH . D 4 HOH A 14 514 419 HOH HOH . D 4 HOH A 15 515 689 HOH HOH . D 4 HOH A 16 516 634 HOH HOH . D 4 HOH A 17 517 491 HOH HOH . D 4 HOH A 18 518 662 HOH HOH . D 4 HOH A 19 519 536 HOH HOH . D 4 HOH A 20 520 621 HOH HOH . D 4 HOH A 21 521 504 HOH HOH . D 4 HOH A 22 522 688 HOH HOH . D 4 HOH A 23 523 423 HOH HOH . D 4 HOH A 24 524 464 HOH HOH . D 4 HOH A 25 525 627 HOH HOH . D 4 HOH A 26 526 470 HOH HOH . D 4 HOH A 27 527 509 HOH HOH . D 4 HOH A 28 528 448 HOH HOH . D 4 HOH A 29 529 417 HOH HOH . D 4 HOH A 30 530 443 HOH HOH . D 4 HOH A 31 531 409 HOH HOH . D 4 HOH A 32 532 465 HOH HOH . D 4 HOH A 33 533 507 HOH HOH . D 4 HOH A 34 534 590 HOH HOH . D 4 HOH A 35 535 660 HOH HOH . D 4 HOH A 36 536 628 HOH HOH . D 4 HOH A 37 537 421 HOH HOH . D 4 HOH A 38 538 519 HOH HOH . D 4 HOH A 39 539 441 HOH HOH . D 4 HOH A 40 540 577 HOH HOH . D 4 HOH A 41 541 429 HOH HOH . D 4 HOH A 42 542 402 HOH HOH . D 4 HOH A 43 543 524 HOH HOH . D 4 HOH A 44 544 461 HOH HOH . D 4 HOH A 45 545 404 HOH HOH . D 4 HOH A 46 546 406 HOH HOH . D 4 HOH A 47 547 697 HOH HOH . D 4 HOH A 48 548 631 HOH HOH . D 4 HOH A 49 549 435 HOH HOH . D 4 HOH A 50 550 405 HOH HOH . D 4 HOH A 51 551 587 HOH HOH . D 4 HOH A 52 552 431 HOH HOH . D 4 HOH A 53 553 664 HOH HOH . D 4 HOH A 54 554 654 HOH HOH . D 4 HOH A 55 555 704 HOH HOH . D 4 HOH A 56 556 413 HOH HOH . D 4 HOH A 57 557 658 HOH HOH . D 4 HOH A 58 558 493 HOH HOH . D 4 HOH A 59 559 666 HOH HOH . D 4 HOH A 60 560 449 HOH HOH . D 4 HOH A 61 561 693 HOH HOH . D 4 HOH A 62 562 528 HOH HOH . D 4 HOH A 63 563 479 HOH HOH . D 4 HOH A 64 564 426 HOH HOH . D 4 HOH A 65 565 619 HOH HOH . D 4 HOH A 66 566 414 HOH HOH . D 4 HOH A 67 567 602 HOH HOH . D 4 HOH A 68 568 684 HOH HOH . D 4 HOH A 69 569 549 HOH HOH . D 4 HOH A 70 570 407 HOH HOH . D 4 HOH A 71 571 451 HOH HOH . D 4 HOH A 72 572 412 HOH HOH . D 4 HOH A 73 573 446 HOH HOH . D 4 HOH A 74 574 430 HOH HOH . D 4 HOH A 75 575 447 HOH HOH . D 4 HOH A 76 576 605 HOH HOH . D 4 HOH A 77 577 683 HOH HOH . D 4 HOH A 78 578 581 HOH HOH . D 4 HOH A 79 579 411 HOH HOH . D 4 HOH A 80 580 503 HOH HOH . D 4 HOH A 81 581 559 HOH HOH . D 4 HOH A 82 582 437 HOH HOH . D 4 HOH A 83 583 625 HOH HOH . D 4 HOH A 84 584 410 HOH HOH . D 4 HOH A 85 585 466 HOH HOH . D 4 HOH A 86 586 677 HOH HOH . D 4 HOH A 87 587 580 HOH HOH . D 4 HOH A 88 588 540 HOH HOH . D 4 HOH A 89 589 475 HOH HOH . D 4 HOH A 90 590 481 HOH HOH . D 4 HOH A 91 591 635 HOH HOH . D 4 HOH A 92 592 539 HOH HOH . D 4 HOH A 93 593 483 HOH HOH . D 4 HOH A 94 594 408 HOH HOH . D 4 HOH A 95 595 415 HOH HOH . D 4 HOH A 96 596 497 HOH HOH . D 4 HOH A 97 597 444 HOH HOH . D 4 HOH A 98 598 455 HOH HOH . D 4 HOH A 99 599 468 HOH HOH . D 4 HOH A 100 600 450 HOH HOH . D 4 HOH A 101 601 489 HOH HOH . D 4 HOH A 102 602 418 HOH HOH . D 4 HOH A 103 603 699 HOH HOH . D 4 HOH A 104 604 522 HOH HOH . D 4 HOH A 105 605 575 HOH HOH . D 4 HOH A 106 606 403 HOH HOH . D 4 HOH A 107 607 436 HOH HOH . D 4 HOH A 108 608 533 HOH HOH . D 4 HOH A 109 609 420 HOH HOH . D 4 HOH A 110 610 452 HOH HOH . D 4 HOH A 111 611 703 HOH HOH . D 4 HOH A 112 612 554 HOH HOH . D 4 HOH A 113 613 424 HOH HOH . D 4 HOH A 114 614 695 HOH HOH . D 4 HOH A 115 615 553 HOH HOH . D 4 HOH A 116 616 477 HOH HOH . D 4 HOH A 117 617 467 HOH HOH . D 4 HOH A 118 618 535 HOH HOH . D 4 HOH A 119 619 668 HOH HOH . D 4 HOH A 120 620 459 HOH HOH . D 4 HOH A 121 621 440 HOH HOH . D 4 HOH A 122 622 561 HOH HOH . D 4 HOH A 123 623 439 HOH HOH . D 4 HOH A 124 624 546 HOH HOH . D 4 HOH A 125 625 700 HOH HOH . D 4 HOH A 126 626 556 HOH HOH . D 4 HOH A 127 627 427 HOH HOH . D 4 HOH A 128 628 488 HOH HOH . D 4 HOH A 129 629 523 HOH HOH . D 4 HOH A 130 630 416 HOH HOH . D 4 HOH A 131 631 486 HOH HOH . D 4 HOH A 132 632 636 HOH HOH . D 4 HOH A 133 633 526 HOH HOH . D 4 HOH A 134 634 442 HOH HOH . D 4 HOH A 135 635 478 HOH HOH . D 4 HOH A 136 636 492 HOH HOH . D 4 HOH A 137 637 552 HOH HOH . D 4 HOH A 138 638 675 HOH HOH . D 4 HOH A 139 639 458 HOH HOH . D 4 HOH A 140 640 505 HOH HOH . D 4 HOH A 141 641 422 HOH HOH . D 4 HOH A 142 642 543 HOH HOH . D 4 HOH A 143 643 463 HOH HOH . D 4 HOH A 144 644 648 HOH HOH . D 4 HOH A 145 645 502 HOH HOH . D 4 HOH A 146 646 657 HOH HOH . D 4 HOH A 147 647 672 HOH HOH . D 4 HOH A 148 648 456 HOH HOH . D 4 HOH A 149 649 472 HOH HOH . D 4 HOH A 150 650 513 HOH HOH . D 4 HOH A 151 651 438 HOH HOH . D 4 HOH A 152 652 484 HOH HOH . D 4 HOH A 153 653 551 HOH HOH . D 4 HOH A 154 654 496 HOH HOH . D 4 HOH A 155 655 562 HOH HOH . D 4 HOH A 156 656 669 HOH HOH . D 4 HOH A 157 657 476 HOH HOH . D 4 HOH A 158 658 454 HOH HOH . D 4 HOH A 159 659 563 HOH HOH . D 4 HOH A 160 660 506 HOH HOH . D 4 HOH A 161 661 638 HOH HOH . D 4 HOH A 162 662 702 HOH HOH . D 4 HOH A 163 663 624 HOH HOH . D 4 HOH A 164 664 633 HOH HOH . D 4 HOH A 165 665 457 HOH HOH . D 4 HOH A 166 666 510 HOH HOH . D 4 HOH A 167 667 498 HOH HOH . D 4 HOH A 168 668 646 HOH HOH . D 4 HOH A 169 669 597 HOH HOH . D 4 HOH A 170 670 618 HOH HOH . D 4 HOH A 171 671 560 HOH HOH . D 4 HOH A 172 672 656 HOH HOH . D 4 HOH A 173 673 567 HOH HOH . D 4 HOH A 174 674 594 HOH HOH . D 4 HOH A 175 675 565 HOH HOH . D 4 HOH A 176 676 687 HOH HOH . D 4 HOH A 177 677 665 HOH HOH . D 4 HOH A 178 678 690 HOH HOH . D 4 HOH A 179 679 589 HOH HOH . D 4 HOH A 180 680 694 HOH HOH . D 4 HOH A 181 681 538 HOH HOH . D 4 HOH A 182 682 678 HOH HOH . D 4 HOH A 183 683 555 HOH HOH . D 4 HOH A 184 684 701 HOH HOH . D 4 HOH A 185 685 579 HOH HOH . D 4 HOH A 186 686 647 HOH HOH . D 4 HOH A 187 687 595 HOH HOH . D 4 HOH A 188 688 517 HOH HOH . D 4 HOH A 189 689 574 HOH HOH . D 4 HOH A 190 690 541 HOH HOH . D 4 HOH A 191 691 433 HOH HOH . D 4 HOH A 192 692 653 HOH HOH . D 4 HOH A 193 693 617 HOH HOH . D 4 HOH A 194 694 674 HOH HOH . D 4 HOH A 195 695 630 HOH HOH . D 4 HOH A 196 696 676 HOH HOH . D 4 HOH A 197 697 598 HOH HOH . D 4 HOH A 198 698 529 HOH HOH . D 4 HOH A 199 699 614 HOH HOH . D 4 HOH A 200 700 487 HOH HOH . D 4 HOH A 201 701 670 HOH HOH . D 4 HOH A 202 702 652 HOH HOH . D 4 HOH A 203 703 512 HOH HOH . D 4 HOH A 204 704 650 HOH HOH . D 4 HOH A 205 705 663 HOH HOH . D 4 HOH A 206 706 527 HOH HOH . D 4 HOH A 207 707 649 HOH HOH . D 4 HOH A 208 708 655 HOH HOH . D 4 HOH A 209 709 471 HOH HOH . D 4 HOH A 210 710 661 HOH HOH . D 4 HOH A 211 711 651 HOH HOH . D 4 HOH A 212 712 679 HOH HOH . D 4 HOH A 213 713 645 HOH HOH . D 4 HOH A 214 714 639 HOH HOH . D 4 HOH A 215 715 606 HOH HOH . D 4 HOH A 216 716 686 HOH HOH . D 4 HOH A 217 717 525 HOH HOH . D 4 HOH A 218 718 671 HOH HOH . D 4 HOH A 219 719 681 HOH HOH . D 4 HOH A 220 720 642 HOH HOH . D 4 HOH A 221 721 682 HOH HOH . D 4 HOH A 222 722 518 HOH HOH . D 4 HOH A 223 723 473 HOH HOH . D 4 HOH A 224 724 596 HOH HOH . D 4 HOH A 225 725 644 HOH HOH . D 4 HOH A 226 726 578 HOH HOH . D 4 HOH A 227 727 462 HOH HOH . D 4 HOH A 228 728 667 HOH HOH . D 4 HOH A 229 729 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UJQ . . . C 3 -46.062 8.752 -13.414 0.38 37.6 ? C10 UJQ 402 A 1 HETATM 2 C C13 UJQ . . . C 3 -47.608 5.306 -12.621 0.38 40.75 ? C13 UJQ 402 A 1 HETATM 3 C C15 UJQ . . . C 3 -48.57 3.056 -12.34 0.38 40.11 ? C15 UJQ 402 A 1 HETATM 4 C C17 UJQ . . . C 3 -48.433 4.573 -10.445 0.38 37.99 ? C17 UJQ 402 A 1 HETATM 5 C C02 UJQ . . . C 3 -48.101 6.726 -14.516 0.38 45.41 ? C02 UJQ 402 A 1 HETATM 6 C C04 UJQ . . . C 3 -47.008 6.371 -13.474 0.38 41.32 ? C04 UJQ 402 A 1 HETATM 7 C C05 UJQ . . . C 3 -46.642 7.656 -12.75 0.38 39.83 ? C05 UJQ 402 A 1 HETATM 8 C C06 UJQ . . . C 3 -46.931 7.781 -11.397 0.38 38.03 ? C06 UJQ 402 A 1 HETATM 9 C C07 UJQ . . . C 3 -46.619 8.991 -10.707 0.38 35.63 ? C07 UJQ 402 A 1 HETATM 10 C C08 UJQ . . . C 3 -46.036 10.06 -11.376 0.38 32.55 ? C08 UJQ 402 A 1 HETATM 11 C C09 UJQ . . . C 3 -45.755 9.949 -12.748 0.38 34.68 ? C09 UJQ 402 A 1 HETATM 12 C C12 UJQ . . . C 3 -47.833 5.561 -11.269 0.38 39.04 ? C12 UJQ 402 A 1 HETATM 13 C C14 UJQ . . . C 3 -47.987 4.05 -13.149 0.38 40.53 ? C14 UJQ 402 A 1 HETATM 14 C C16 UJQ . . . C 3 -48.799 3.332 -10.979 0.38 39.52 ? C16 UJQ 402 A 1 HETATM 15 O O01 UJQ . . . C 3 -49.246 6.984 -14.053 0.38 40.8 ? O01 UJQ 402 A 1 HETATM 16 O O03 UJQ . . . C 3 -47.748 6.723 -15.713 0.38 49.76 ? O03 UJQ 402 A 1 HETATM 17 O O11 UJQ . . . C 3 -47.511 6.762 -10.675 0.38 38.5 ? O11 UJQ 402 A 1 HETATM 18 H H1 UJQ . . . C 3 -45.83 8.694 -14.477 0.38 37.52 ? H1 UJQ 402 A 1 HETATM 19 H H2 UJQ . . . C 3 -48.856 2.088 -12.759 0.38 39.66 ? H2 UJQ 402 A 1 HETATM 20 H H3 UJQ . . . C 3 -48.623 4.728 -9.383 0.38 38.48 ? H3 UJQ 402 A 1 HETATM 21 H H4 UJQ . . . C 3 -46.119 5.975 -14.021 0.38 41.7 ? H4 UJQ 402 A 1 HETATM 22 H H5 UJQ . . . C 3 -46.819 9.13 -9.645 0.38 35.92 ? H5 UJQ 402 A 1 HETATM 23 H H6 UJQ . . . C 3 -45.79 10.993 -10.863 0.38 34.53 ? H6 UJQ 402 A 1 HETATM 24 H H7 UJQ . . . C 3 -45.292 10.784 -13.279 0.38 35.43 ? H7 UJQ 402 A 1 HETATM 25 H H8 UJQ . . . C 3 -47.824 3.819 -14.202 0.38 40 ? H8 UJQ 402 A 1 HETATM 26 H H9 UJQ . . . C 3 -49.248 2.555 -10.356 0.38 39.05 ? H9 UJQ 402 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1099 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 26 #