data_7GUF # _model_server_result.job_id JkF8pRQ4XMa2pIqff9VSCg _model_server_result.datetime_utc '2025-03-06 07:22:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7guf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 7GUF # _exptl.entry_id 7GUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GUF _cell.length_a 67.54 _cell.length_b 67.54 _cell.length_c 166.12 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.77 -58.491356 27.686667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 118 n n S C1 DMS sing 119 n n S C2 DMS sing 120 n n C1 H11 DMS sing 121 n n C1 H12 DMS sing 122 n n C1 H13 DMS sing 123 n n C2 H21 DMS sing 124 n n C2 H22 DMS sing 125 n n C2 H23 DMS sing 126 n n # _atom_sites.entry_id 7GUF _atom_sites.fract_transf_matrix[1][1] 0.014806 _atom_sites.fract_transf_matrix[1][2] 0.008548 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7ZO A 1 201 1 7ZO 375 . D 4 CL A 1 202 1 CL CL . E 5 DMS D 1 101 1 DMS DMS . F 6 HOH A 1 301 42 HOH HOH . F 6 HOH A 2 302 15 HOH HOH . F 6 HOH A 3 303 84 HOH HOH . F 6 HOH A 4 304 88 HOH HOH . F 6 HOH A 5 305 114 HOH HOH . F 6 HOH A 6 306 166 HOH HOH . F 6 HOH A 7 307 81 HOH HOH . F 6 HOH A 8 308 159 HOH HOH . F 6 HOH A 9 309 149 HOH HOH . F 6 HOH A 10 310 92 HOH HOH . F 6 HOH A 11 311 189 HOH HOH . F 6 HOH A 12 312 130 HOH HOH . F 6 HOH A 13 313 23 HOH HOH . F 6 HOH A 14 314 187 HOH HOH . F 6 HOH A 15 315 83 HOH HOH . F 6 HOH A 16 316 85 HOH HOH . F 6 HOH A 17 317 87 HOH HOH . F 6 HOH A 18 318 32 HOH HOH . F 6 HOH A 19 319 44 HOH HOH . F 6 HOH A 20 320 5 HOH HOH . F 6 HOH A 21 321 24 HOH HOH . F 6 HOH A 22 322 230 HOH HOH . F 6 HOH A 23 323 113 HOH HOH . F 6 HOH A 24 324 103 HOH HOH . F 6 HOH A 25 325 14 HOH HOH . F 6 HOH A 26 326 196 HOH HOH . F 6 HOH A 27 327 3 HOH HOH . F 6 HOH A 28 328 143 HOH HOH . F 6 HOH A 29 329 109 HOH HOH . F 6 HOH A 30 330 165 HOH HOH . F 6 HOH A 31 331 135 HOH HOH . F 6 HOH A 32 332 63 HOH HOH . F 6 HOH A 33 333 50 HOH HOH . F 6 HOH A 34 334 13 HOH HOH . F 6 HOH A 35 335 33 HOH HOH . F 6 HOH A 36 336 97 HOH HOH . F 6 HOH A 37 337 134 HOH HOH . F 6 HOH A 38 338 100 HOH HOH . F 6 HOH A 39 339 112 HOH HOH . F 6 HOH A 40 340 11 HOH HOH . F 6 HOH A 41 341 117 HOH HOH . F 6 HOH A 42 342 213 HOH HOH . F 6 HOH A 43 343 94 HOH HOH . F 6 HOH A 44 344 184 HOH HOH . F 6 HOH A 45 345 35 HOH HOH . F 6 HOH A 46 346 141 HOH HOH . F 6 HOH A 47 347 136 HOH HOH . F 6 HOH A 48 348 18 HOH HOH . F 6 HOH A 49 349 90 HOH HOH . F 6 HOH A 50 350 180 HOH HOH . F 6 HOH A 51 351 51 HOH HOH . F 6 HOH A 52 352 110 HOH HOH . F 6 HOH A 53 353 86 HOH HOH . F 6 HOH A 54 354 119 HOH HOH . F 6 HOH A 55 355 116 HOH HOH . F 6 HOH A 56 356 123 HOH HOH . F 6 HOH A 57 357 115 HOH HOH . F 6 HOH A 58 358 121 HOH HOH . F 6 HOH A 59 359 26 HOH HOH . F 6 HOH A 60 360 246 HOH HOH . F 6 HOH A 61 361 74 HOH HOH . F 6 HOH A 62 362 102 HOH HOH . F 6 HOH A 63 363 192 HOH HOH . F 6 HOH A 64 364 89 HOH HOH . F 6 HOH A 65 365 95 HOH HOH . F 6 HOH A 66 366 49 HOH HOH . F 6 HOH A 67 367 231 HOH HOH . F 6 HOH A 68 368 25 HOH HOH . F 6 HOH A 69 369 147 HOH HOH . F 6 HOH A 70 370 150 HOH HOH . F 6 HOH A 71 371 151 HOH HOH . F 6 HOH A 72 372 101 HOH HOH . F 6 HOH A 73 373 164 HOH HOH . F 6 HOH A 74 374 6 HOH HOH . F 6 HOH A 75 375 62 HOH HOH . F 6 HOH A 76 376 20 HOH HOH . F 6 HOH A 77 377 66 HOH HOH . F 6 HOH A 78 378 168 HOH HOH . F 6 HOH A 79 379 28 HOH HOH . F 6 HOH A 80 380 29 HOH HOH . F 6 HOH A 81 381 105 HOH HOH . F 6 HOH A 82 382 178 HOH HOH . F 6 HOH A 83 383 244 HOH HOH . F 6 HOH A 84 384 238 HOH HOH . F 6 HOH A 85 385 22 HOH HOH . F 6 HOH A 86 386 107 HOH HOH . F 6 HOH A 87 387 57 HOH HOH . F 6 HOH A 88 388 10 HOH HOH . F 6 HOH A 89 389 99 HOH HOH . F 6 HOH A 90 390 21 HOH HOH . F 6 HOH A 91 391 82 HOH HOH . F 6 HOH A 92 392 60 HOH HOH . F 6 HOH A 93 393 40 HOH HOH . F 6 HOH A 94 394 104 HOH HOH . F 6 HOH A 95 395 39 HOH HOH . F 6 HOH A 96 396 203 HOH HOH . F 6 HOH A 97 397 93 HOH HOH . F 6 HOH A 98 398 193 HOH HOH . F 6 HOH A 99 399 56 HOH HOH . F 6 HOH A 100 400 36 HOH HOH . F 6 HOH A 101 401 27 HOH HOH . F 6 HOH A 102 402 242 HOH HOH . F 6 HOH A 103 403 53 HOH HOH . F 6 HOH A 104 404 75 HOH HOH . F 6 HOH A 105 405 17 HOH HOH . F 6 HOH A 106 406 38 HOH HOH . F 6 HOH A 107 407 30 HOH HOH . F 6 HOH A 108 408 37 HOH HOH . F 6 HOH A 109 409 239 HOH HOH . F 6 HOH A 110 410 171 HOH HOH . F 6 HOH A 111 411 167 HOH HOH . F 6 HOH A 112 412 52 HOH HOH . F 6 HOH A 113 413 45 HOH HOH . F 6 HOH A 114 414 209 HOH HOH . F 6 HOH A 115 415 96 HOH HOH . F 6 HOH A 116 416 79 HOH HOH . F 6 HOH A 117 417 237 HOH HOH . F 6 HOH A 118 418 54 HOH HOH . F 6 HOH A 119 419 69 HOH HOH . F 6 HOH A 120 420 186 HOH HOH . F 6 HOH A 121 421 176 HOH HOH . F 6 HOH A 122 422 145 HOH HOH . F 6 HOH A 123 423 55 HOH HOH . F 6 HOH A 124 424 200 HOH HOH . F 6 HOH A 125 425 241 HOH HOH . F 6 HOH A 126 426 31 HOH HOH . F 6 HOH A 127 427 148 HOH HOH . F 6 HOH A 128 428 146 HOH HOH . F 6 HOH A 129 429 153 HOH HOH . F 6 HOH A 130 430 98 HOH HOH . F 6 HOH A 131 431 139 HOH HOH . F 6 HOH A 132 432 43 HOH HOH . F 6 HOH A 133 433 185 HOH HOH . F 6 HOH A 134 434 106 HOH HOH . F 6 HOH A 135 435 191 HOH HOH . F 6 HOH A 136 436 158 HOH HOH . F 6 HOH A 137 437 188 HOH HOH . F 6 HOH A 138 438 232 HOH HOH . F 6 HOH A 139 439 76 HOH HOH . F 6 HOH A 140 440 80 HOH HOH . F 6 HOH A 141 441 204 HOH HOH . F 6 HOH A 142 442 111 HOH HOH . F 6 HOH A 143 443 137 HOH HOH . F 6 HOH A 144 444 108 HOH HOH . F 6 HOH A 145 445 140 HOH HOH . F 6 HOH A 146 446 206 HOH HOH . F 6 HOH A 147 447 247 HOH HOH . F 6 HOH A 148 448 169 HOH HOH . F 6 HOH A 149 449 221 HOH HOH . F 6 HOH A 150 450 212 HOH HOH . F 6 HOH A 151 451 70 HOH HOH . F 6 HOH A 152 452 161 HOH HOH . F 6 HOH A 153 453 228 HOH HOH . F 6 HOH A 154 454 243 HOH HOH . F 6 HOH A 155 455 131 HOH HOH . F 6 HOH A 156 456 215 HOH HOH . F 6 HOH A 157 457 183 HOH HOH . F 6 HOH A 158 458 142 HOH HOH . F 6 HOH A 159 459 73 HOH HOH . F 6 HOH A 160 460 59 HOH HOH . F 6 HOH A 161 461 170 HOH HOH . F 6 HOH A 162 462 245 HOH HOH . F 6 HOH A 163 463 65 HOH HOH . F 6 HOH A 164 464 179 HOH HOH . F 6 HOH A 165 465 175 HOH HOH . F 6 HOH A 166 466 181 HOH HOH . F 6 HOH A 167 467 152 HOH HOH . F 6 HOH A 168 468 195 HOH HOH . F 6 HOH A 169 469 61 HOH HOH . F 6 HOH A 170 470 208 HOH HOH . F 6 HOH A 171 471 233 HOH HOH . F 6 HOH A 172 472 144 HOH HOH . F 6 HOH A 173 473 225 HOH HOH . G 6 HOH D 1 201 77 HOH HOH . G 6 HOH D 2 202 71 HOH HOH . G 6 HOH D 3 203 47 HOH HOH . G 6 HOH D 4 204 58 HOH HOH . G 6 HOH D 5 205 68 HOH HOH . G 6 HOH D 6 206 240 HOH HOH . G 6 HOH D 7 207 220 HOH HOH . G 6 HOH D 8 208 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . E 5 17.59 -35.368 -1.251 0.78 39.1 ? S DMS 101 D 1 HETATM 2 O O DMS . A . E 5 16.295 -35.131 -0.617 0.78 41.41 ? O DMS 101 D 1 HETATM 3 C C1 DMS . A . E 5 18.716 -34.461 -0.21 0.78 37.1 ? C1 DMS 101 D 1 HETATM 4 C C2 DMS . A . E 5 18.011 -37.001 -0.769 0.78 38.84 ? C2 DMS 101 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #