data_7GUN
#
_model_server_result.job_id            Q4q2caTGfWubYWpa1ugwDw 
_model_server_result.datetime_utc      '2025-03-06 18:00:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gun 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7GUN 
#
_exptl.entry_id    7GUN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.679 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7GUN 
_cell.length_a            67.61 
_cell.length_b            67.61 
_cell.length_c            166.28 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GUN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.805 -58.551978 27.713333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C12 H9 Cl N4 O' 
_chem_comp.formula_weight    260.679 
_chem_comp.id                7ZO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O17 C11 7ZO doub 1 n n 
C11 C12 7ZO sing 2 n n 
C11 N15 7ZO sing 3 n n 
C12 C6 7ZO sing 4 n n 
N15 C7 7ZO sing 5 n n 
C6 C7 7ZO doub 6 n y 
C6 C3 7ZO sing 7 n y 
C7 C1 7ZO sing 8 n y 
C3 C8 7ZO doub 9 n y 
C1 C2 7ZO doub 10 n y 
C8 C2 7ZO sing 11 n y 
C8 N16 7ZO sing 12 n n 
N16 C10 7ZO sing 13 n n 
C10 N14 7ZO doub 14 n y 
C10 C9 7ZO sing 15 n y 
CL1 C9 7ZO sing 16 n n 
N14 C5 7ZO sing 17 n y 
C9 C4 7ZO doub 18 n y 
C5 N13 7ZO doub 19 n y 
C4 N13 7ZO sing 20 n y 
C4 H1 7ZO sing 21 n n 
C5 H2 7ZO sing 22 n n 
C1 H3 7ZO sing 23 n n 
C2 H4 7ZO sing 24 n n 
C3 H5 7ZO sing 25 n n 
C12 H6 7ZO sing 26 n n 
C12 H7 7ZO sing 27 n n 
N15 H8 7ZO sing 28 n n 
N16 H9 7ZO sing 29 n n 
#
_atom_sites.entry_id                     7GUN 
_atom_sites.fract_transf_matrix[1][1]    0.014791 
_atom_sites.fract_transf_matrix[1][2]    0.008539 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 7ZO A 1 201 1 7ZO 375 . 
D 4 CL A 1 202 1 CL CL . 
E 5 DMS D 1 101 1 DMS DMS . 
F 6 HOH A 1 301 42 HOH HOH . 
F 6 HOH A 2 302 81 HOH HOH . 
F 6 HOH A 3 303 15 HOH HOH . 
F 6 HOH A 4 304 166 HOH HOH . 
F 6 HOH A 5 305 84 HOH HOH . 
F 6 HOH A 6 306 88 HOH HOH . 
F 6 HOH A 7 307 159 HOH HOH . 
F 6 HOH A 8 308 130 HOH HOH . 
F 6 HOH A 9 309 33 HOH HOH . 
F 6 HOH A 10 310 114 HOH HOH . 
F 6 HOH A 11 311 87 HOH HOH . 
F 6 HOH A 12 312 85 HOH HOH . 
F 6 HOH A 13 313 189 HOH HOH . 
F 6 HOH A 14 314 32 HOH HOH . 
F 6 HOH A 15 315 149 HOH HOH . 
F 6 HOH A 16 316 14 HOH HOH . 
F 6 HOH A 17 317 23 HOH HOH . 
F 6 HOH A 18 318 92 HOH HOH . 
F 6 HOH A 19 319 24 HOH HOH . 
F 6 HOH A 20 320 5 HOH HOH . 
F 6 HOH A 21 321 143 HOH HOH . 
F 6 HOH A 22 322 230 HOH HOH . 
F 6 HOH A 23 323 196 HOH HOH . 
F 6 HOH A 24 324 187 HOH HOH . 
F 6 HOH A 25 325 83 HOH HOH . 
F 6 HOH A 26 326 103 HOH HOH . 
F 6 HOH A 27 327 134 HOH HOH . 
F 6 HOH A 28 328 109 HOH HOH . 
F 6 HOH A 29 329 63 HOH HOH . 
F 6 HOH A 30 330 50 HOH HOH . 
F 6 HOH A 31 331 165 HOH HOH . 
F 6 HOH A 32 332 113 HOH HOH . 
F 6 HOH A 33 333 3 HOH HOH . 
F 6 HOH A 34 334 90 HOH HOH . 
F 6 HOH A 35 335 100 HOH HOH . 
F 6 HOH A 36 336 97 HOH HOH . 
F 6 HOH A 37 337 141 HOH HOH . 
F 6 HOH A 38 338 94 HOH HOH . 
F 6 HOH A 39 339 110 HOH HOH . 
F 6 HOH A 40 340 213 HOH HOH . 
F 6 HOH A 41 341 11 HOH HOH . 
F 6 HOH A 42 342 112 HOH HOH . 
F 6 HOH A 43 343 35 HOH HOH . 
F 6 HOH A 44 344 26 HOH HOH . 
F 6 HOH A 45 345 151 HOH HOH . 
F 6 HOH A 46 346 13 HOH HOH . 
F 6 HOH A 47 347 135 HOH HOH . 
F 6 HOH A 48 348 117 HOH HOH . 
F 6 HOH A 49 349 180 HOH HOH . 
F 6 HOH A 50 350 51 HOH HOH . 
F 6 HOH A 51 351 25 HOH HOH . 
F 6 HOH A 52 352 184 HOH HOH . 
F 6 HOH A 53 353 115 HOH HOH . 
F 6 HOH A 54 354 116 HOH HOH . 
F 6 HOH A 55 355 6 HOH HOH . 
F 6 HOH A 56 356 49 HOH HOH . 
F 6 HOH A 57 357 136 HOH HOH . 
F 6 HOH A 58 358 102 HOH HOH . 
F 6 HOH A 59 359 74 HOH HOH . 
F 6 HOH A 60 360 95 HOH HOH . 
F 6 HOH A 61 361 123 HOH HOH . 
F 6 HOH A 62 362 44 HOH HOH . 
F 6 HOH A 63 363 231 HOH HOH . 
F 6 HOH A 64 364 119 HOH HOH . 
F 6 HOH A 65 365 150 HOH HOH . 
F 6 HOH A 66 366 121 HOH HOH . 
F 6 HOH A 67 367 20 HOH HOH . 
F 6 HOH A 68 368 18 HOH HOH . 
F 6 HOH A 69 369 62 HOH HOH . 
F 6 HOH A 70 370 28 HOH HOH . 
F 6 HOH A 71 371 86 HOH HOH . 
F 6 HOH A 72 372 147 HOH HOH . 
F 6 HOH A 73 373 66 HOH HOH . 
F 6 HOH A 74 374 107 HOH HOH . 
F 6 HOH A 75 375 244 HOH HOH . 
F 6 HOH A 76 376 89 HOH HOH . 
F 6 HOH A 77 377 22 HOH HOH . 
F 6 HOH A 78 378 57 HOH HOH . 
F 6 HOH A 79 379 178 HOH HOH . 
F 6 HOH A 80 380 246 HOH HOH . 
F 6 HOH A 81 381 164 HOH HOH . 
F 6 HOH A 82 382 10 HOH HOH . 
F 6 HOH A 83 383 40 HOH HOH . 
F 6 HOH A 84 384 238 HOH HOH . 
F 6 HOH A 85 385 168 HOH HOH . 
F 6 HOH A 86 386 104 HOH HOH . 
F 6 HOH A 87 387 29 HOH HOH . 
F 6 HOH A 88 388 105 HOH HOH . 
F 6 HOH A 89 389 56 HOH HOH . 
F 6 HOH A 90 390 192 HOH HOH . 
F 6 HOH A 91 391 101 HOH HOH . 
F 6 HOH A 92 392 99 HOH HOH . 
F 6 HOH A 93 393 21 HOH HOH . 
F 6 HOH A 94 394 39 HOH HOH . 
F 6 HOH A 95 395 60 HOH HOH . 
F 6 HOH A 96 396 30 HOH HOH . 
F 6 HOH A 97 397 96 HOH HOH . 
F 6 HOH A 98 398 82 HOH HOH . 
F 6 HOH A 99 399 242 HOH HOH . 
F 6 HOH A 100 400 38 HOH HOH . 
F 6 HOH A 101 401 36 HOH HOH . 
F 6 HOH A 102 402 75 HOH HOH . 
F 6 HOH A 103 403 17 HOH HOH . 
F 6 HOH A 104 404 45 HOH HOH . 
F 6 HOH A 105 405 52 HOH HOH . 
F 6 HOH A 106 406 193 HOH HOH . 
F 6 HOH A 107 407 203 HOH HOH . 
F 6 HOH A 108 408 27 HOH HOH . 
F 6 HOH A 109 409 237 HOH HOH . 
F 6 HOH A 110 410 167 HOH HOH . 
F 6 HOH A 111 411 209 HOH HOH . 
F 6 HOH A 112 412 53 HOH HOH . 
F 6 HOH A 113 413 37 HOH HOH . 
F 6 HOH A 114 414 69 HOH HOH . 
F 6 HOH A 115 415 241 HOH HOH . 
F 6 HOH A 116 416 93 HOH HOH . 
F 6 HOH A 117 417 54 HOH HOH . 
F 6 HOH A 118 418 176 HOH HOH . 
F 6 HOH A 119 419 171 HOH HOH . 
F 6 HOH A 120 420 146 HOH HOH . 
F 6 HOH A 121 421 239 HOH HOH . 
F 6 HOH A 122 422 55 HOH HOH . 
F 6 HOH A 123 423 79 HOH HOH . 
F 6 HOH A 124 424 200 HOH HOH . 
F 6 HOH A 125 425 153 HOH HOH . 
F 6 HOH A 126 426 186 HOH HOH . 
F 6 HOH A 127 427 148 HOH HOH . 
F 6 HOH A 128 428 98 HOH HOH . 
F 6 HOH A 129 429 43 HOH HOH . 
F 6 HOH A 130 430 31 HOH HOH . 
F 6 HOH A 131 431 185 HOH HOH . 
F 6 HOH A 132 432 188 HOH HOH . 
F 6 HOH A 133 433 145 HOH HOH . 
F 6 HOH A 134 434 191 HOH HOH . 
F 6 HOH A 135 435 139 HOH HOH . 
F 6 HOH A 136 436 106 HOH HOH . 
F 6 HOH A 137 437 158 HOH HOH . 
F 6 HOH A 138 438 80 HOH HOH . 
F 6 HOH A 139 439 232 HOH HOH . 
F 6 HOH A 140 440 76 HOH HOH . 
F 6 HOH A 141 441 137 HOH HOH . 
F 6 HOH A 142 442 111 HOH HOH . 
F 6 HOH A 143 443 204 HOH HOH . 
F 6 HOH A 144 444 221 HOH HOH . 
F 6 HOH A 145 445 140 HOH HOH . 
F 6 HOH A 146 446 206 HOH HOH . 
F 6 HOH A 147 447 108 HOH HOH . 
F 6 HOH A 148 448 169 HOH HOH . 
F 6 HOH A 149 449 131 HOH HOH . 
F 6 HOH A 150 450 247 HOH HOH . 
F 6 HOH A 151 451 70 HOH HOH . 
F 6 HOH A 152 452 243 HOH HOH . 
F 6 HOH A 153 453 161 HOH HOH . 
F 6 HOH A 154 454 212 HOH HOH . 
F 6 HOH A 155 455 228 HOH HOH . 
F 6 HOH A 156 456 183 HOH HOH . 
F 6 HOH A 157 457 215 HOH HOH . 
F 6 HOH A 158 458 73 HOH HOH . 
F 6 HOH A 159 459 142 HOH HOH . 
F 6 HOH A 160 460 179 HOH HOH . 
F 6 HOH A 161 461 59 HOH HOH . 
F 6 HOH A 162 462 245 HOH HOH . 
F 6 HOH A 163 463 175 HOH HOH . 
F 6 HOH A 164 464 65 HOH HOH . 
F 6 HOH A 165 465 195 HOH HOH . 
F 6 HOH A 166 466 170 HOH HOH . 
F 6 HOH A 167 467 181 HOH HOH . 
F 6 HOH A 168 468 152 HOH HOH . 
F 6 HOH A 169 469 61 HOH HOH . 
F 6 HOH A 170 470 208 HOH HOH . 
F 6 HOH A 171 471 233 HOH HOH . 
F 6 HOH A 172 472 225 HOH HOH . 
F 6 HOH A 173 473 144 HOH HOH . 
G 6 HOH D 1 201 77 HOH HOH . 
G 6 HOH D 2 202 71 HOH HOH . 
G 6 HOH D 3 203 68 HOH HOH . 
G 6 HOH D 4 204 47 HOH HOH . 
G 6 HOH D 5 205 58 HOH HOH . 
G 6 HOH D 6 206 240 HOH HOH . 
G 6 HOH D 7 207 220 HOH HOH . 
G 6 HOH D 8 208 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7ZO . . . C 3 27.34 -10.28 11.832 1 30.33 ? C4 7ZO 201 A 1 
HETATM 2 C C5 7ZO . . . C 3 25.305 -9.38 12.188 1 32.12 ? C5 7ZO 201 A 1 
HETATM 3 C C6 7ZO . . . C 3 23.983 -10.73 18.088 1 29.63 ? C6 7ZO 201 A 1 
HETATM 4 C C7 7ZO . . . C 3 23.494 -9.429 18.147 1 30.93 ? C7 7ZO 201 A 1 
HETATM 5 C C8 7ZO . . . C 3 25.543 -10.047 16.379 1 26.7 ? C8 7ZO 201 A 1 
HETATM 6 C C10 7ZO . . . C 3 26.39 -10.214 14.015 1 28.55 ? C10 7ZO 201 A 1 
HETATM 7 C C1 7ZO . . . C 3 23.974 -8.436 17.296 1 28.35 ? C1 7ZO 201 A 1 
HETATM 8 C C2 7ZO . . . C 3 24.99 -8.761 16.402 1 27.44 ? C2 7ZO 201 A 1 
HETATM 9 C C3 7ZO . . . C 3 25.006 -11.045 17.199 1 27.15 ? C3 7ZO 201 A 1 
HETATM 10 C C9 7ZO . . . C 3 27.45 -10.584 13.178 1 28.55 ? C9 7ZO 201 A 1 
HETATM 11 C C11 7ZO . . . C 3 22.271 -10.562 19.709 1 34.93 ? C11 7ZO 201 A 1 
HETATM 12 C C12 7ZO . . . C 3 23.233 -11.555 19.092 1 32.48 ? C12 7ZO 201 A 1 
HETATM 13 N N13 7ZO . . . C 3 26.27 -9.671 11.316 1 32.53 ? N13 7ZO 201 A 1 
HETATM 14 N N14 7ZO . . . C 3 25.294 -9.612 13.506 1 31.38 ? N14 7ZO 201 A 1 
HETATM 15 N N15 7ZO . . . C 3 22.492 -9.356 19.123 1 31.93 ? N15 7ZO 201 A 1 
HETATM 16 N N16 7ZO . . . C 3 26.388 -10.516 15.345 1 26.07 ? N16 7ZO 201 A 1 
HETATM 17 O O17 7ZO . . . C 3 21.412 -10.797 20.558 1 34.86 ? O17 7ZO 201 A 1 
HETATM 18 CL CL1 7ZO . . . C 3 28.86 -11.393 13.759 0.99 28.35 ? CL1 7ZO 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           18 
#