data_7GUP
#
_model_server_result.job_id            8CxxzhlWQEHvrerY_rzqnA 
_model_server_result.datetime_utc      '2025-03-03 03:19:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7GUP 
#
_exptl.entry_id    7GUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.679 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7GUP 
_cell.length_a            67.6 
_cell.length_b            67.6 
_cell.length_c            166.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.8 -58.543317 27.726667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C12 H9 Cl N4 O' 
_chem_comp.formula_weight    260.679 
_chem_comp.id                7ZO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O17 C11 7ZO doub 1 n n 
C11 C12 7ZO sing 2 n n 
C11 N15 7ZO sing 3 n n 
C12 C6 7ZO sing 4 n n 
N15 C7 7ZO sing 5 n n 
C6 C7 7ZO doub 6 n y 
C6 C3 7ZO sing 7 n y 
C7 C1 7ZO sing 8 n y 
C3 C8 7ZO doub 9 n y 
C1 C2 7ZO doub 10 n y 
C8 C2 7ZO sing 11 n y 
C8 N16 7ZO sing 12 n n 
N16 C10 7ZO sing 13 n n 
C10 N14 7ZO doub 14 n y 
C10 C9 7ZO sing 15 n y 
CL1 C9 7ZO sing 16 n n 
N14 C5 7ZO sing 17 n y 
C9 C4 7ZO doub 18 n y 
C5 N13 7ZO doub 19 n y 
C4 N13 7ZO sing 20 n y 
C4 H1 7ZO sing 21 n n 
C5 H2 7ZO sing 22 n n 
C1 H3 7ZO sing 23 n n 
C2 H4 7ZO sing 24 n n 
C3 H5 7ZO sing 25 n n 
C12 H6 7ZO sing 26 n n 
C12 H7 7ZO sing 27 n n 
N15 H8 7ZO sing 28 n n 
N16 H9 7ZO sing 29 n n 
#
_atom_sites.entry_id                     7GUP 
_atom_sites.fract_transf_matrix[1][1]    0.014793 
_atom_sites.fract_transf_matrix[1][2]    0.008541 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017081 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 7ZO A 1 201 1 7ZO 375 . 
D 4 CL A 1 202 1 CL CL . 
E 5 DMS D 1 101 1 DMS DMS . 
F 6 HOH A 1 301 81 HOH HOH . 
F 6 HOH A 2 302 42 HOH HOH . 
F 6 HOH A 3 303 15 HOH HOH . 
F 6 HOH A 4 304 32 HOH HOH . 
F 6 HOH A 5 305 88 HOH HOH . 
F 6 HOH A 6 306 84 HOH HOH . 
F 6 HOH A 7 307 159 HOH HOH . 
F 6 HOH A 8 308 114 HOH HOH . 
F 6 HOH A 9 309 130 HOH HOH . 
F 6 HOH A 10 310 63 HOH HOH . 
F 6 HOH A 11 311 33 HOH HOH . 
F 6 HOH A 12 312 92 HOH HOH . 
F 6 HOH A 13 313 166 HOH HOH . 
F 6 HOH A 14 314 230 HOH HOH . 
F 6 HOH A 15 315 189 HOH HOH . 
F 6 HOH A 16 316 5 HOH HOH . 
F 6 HOH A 17 317 83 HOH HOH . 
F 6 HOH A 18 318 85 HOH HOH . 
F 6 HOH A 19 319 149 HOH HOH . 
F 6 HOH A 20 320 24 HOH HOH . 
F 6 HOH A 21 321 187 HOH HOH . 
F 6 HOH A 22 322 23 HOH HOH . 
F 6 HOH A 23 323 196 HOH HOH . 
F 6 HOH A 24 324 14 HOH HOH . 
F 6 HOH A 25 325 134 HOH HOH . 
F 6 HOH A 26 326 143 HOH HOH . 
F 6 HOH A 27 327 87 HOH HOH . 
F 6 HOH A 28 328 103 HOH HOH . 
F 6 HOH A 29 329 109 HOH HOH . 
F 6 HOH A 30 330 113 HOH HOH . 
F 6 HOH A 31 331 44 HOH HOH . 
F 6 HOH A 32 332 97 HOH HOH . 
F 6 HOH A 33 333 51 HOH HOH . 
F 6 HOH A 34 334 165 HOH HOH . 
F 6 HOH A 35 335 141 HOH HOH . 
F 6 HOH A 36 336 35 HOH HOH . 
F 6 HOH A 37 337 135 HOH HOH . 
F 6 HOH A 38 338 151 HOH HOH . 
F 6 HOH A 39 339 105 HOH HOH . 
F 6 HOH A 40 340 90 HOH HOH . 
F 6 HOH A 41 341 49 HOH HOH . 
F 6 HOH A 42 342 117 HOH HOH . 
F 6 HOH A 43 343 213 HOH HOH . 
F 6 HOH A 44 344 112 HOH HOH . 
F 6 HOH A 45 345 13 HOH HOH . 
F 6 HOH A 46 346 110 HOH HOH . 
F 6 HOH A 47 347 100 HOH HOH . 
F 6 HOH A 48 348 101 HOH HOH . 
F 6 HOH A 49 349 50 HOH HOH . 
F 6 HOH A 50 350 136 HOH HOH . 
F 6 HOH A 51 351 86 HOH HOH . 
F 6 HOH A 52 352 94 HOH HOH . 
F 6 HOH A 53 353 180 HOH HOH . 
F 6 HOH A 54 354 26 HOH HOH . 
F 6 HOH A 55 355 123 HOH HOH . 
F 6 HOH A 56 356 6 HOH HOH . 
F 6 HOH A 57 357 184 HOH HOH . 
F 6 HOH A 58 358 115 HOH HOH . 
F 6 HOH A 59 359 28 HOH HOH . 
F 6 HOH A 60 360 116 HOH HOH . 
F 6 HOH A 61 361 231 HOH HOH . 
F 6 HOH A 62 362 74 HOH HOH . 
F 6 HOH A 63 363 119 HOH HOH . 
F 6 HOH A 64 364 102 HOH HOH . 
F 6 HOH A 65 365 11 HOH HOH . 
F 6 HOH A 66 366 95 HOH HOH . 
F 6 HOH A 67 367 3 HOH HOH . 
F 6 HOH A 68 368 121 HOH HOH . 
F 6 HOH A 69 369 20 HOH HOH . 
F 6 HOH A 70 370 66 HOH HOH . 
F 6 HOH A 71 371 147 HOH HOH . 
F 6 HOH A 72 372 244 HOH HOH . 
F 6 HOH A 73 373 62 HOH HOH . 
F 6 HOH A 74 374 150 HOH HOH . 
F 6 HOH A 75 375 40 HOH HOH . 
F 6 HOH A 76 376 107 HOH HOH . 
F 6 HOH A 77 377 104 HOH HOH . 
F 6 HOH A 78 378 178 HOH HOH . 
F 6 HOH A 79 379 168 HOH HOH . 
F 6 HOH A 80 380 22 HOH HOH . 
F 6 HOH A 81 381 10 HOH HOH . 
F 6 HOH A 82 382 89 HOH HOH . 
F 6 HOH A 83 383 25 HOH HOH . 
F 6 HOH A 84 384 18 HOH HOH . 
F 6 HOH A 85 385 164 HOH HOH . 
F 6 HOH A 86 386 29 HOH HOH . 
F 6 HOH A 87 387 192 HOH HOH . 
F 6 HOH A 88 388 238 HOH HOH . 
F 6 HOH A 89 389 36 HOH HOH . 
F 6 HOH A 90 390 57 HOH HOH . 
F 6 HOH A 91 391 246 HOH HOH . 
F 6 HOH A 92 392 21 HOH HOH . 
F 6 HOH A 93 393 99 HOH HOH . 
F 6 HOH A 94 394 167 HOH HOH . 
F 6 HOH A 95 395 60 HOH HOH . 
F 6 HOH A 96 396 30 HOH HOH . 
F 6 HOH A 97 397 56 HOH HOH . 
F 6 HOH A 98 398 39 HOH HOH . 
F 6 HOH A 99 399 193 HOH HOH . 
F 6 HOH A 100 400 38 HOH HOH . 
F 6 HOH A 101 401 96 HOH HOH . 
F 6 HOH A 102 402 82 HOH HOH . 
F 6 HOH A 103 403 93 HOH HOH . 
F 6 HOH A 104 404 75 HOH HOH . 
F 6 HOH A 105 405 53 HOH HOH . 
F 6 HOH A 106 406 17 HOH HOH . 
F 6 HOH A 107 407 203 HOH HOH . 
F 6 HOH A 108 408 27 HOH HOH . 
F 6 HOH A 109 409 52 HOH HOH . 
F 6 HOH A 110 410 37 HOH HOH . 
F 6 HOH A 111 411 237 HOH HOH . 
F 6 HOH A 112 412 69 HOH HOH . 
F 6 HOH A 113 413 239 HOH HOH . 
F 6 HOH A 114 414 242 HOH HOH . 
F 6 HOH A 115 415 54 HOH HOH . 
F 6 HOH A 116 416 45 HOH HOH . 
F 6 HOH A 117 417 79 HOH HOH . 
F 6 HOH A 118 418 146 HOH HOH . 
F 6 HOH A 119 419 209 HOH HOH . 
F 6 HOH A 120 420 185 HOH HOH . 
F 6 HOH A 121 421 176 HOH HOH . 
F 6 HOH A 122 422 55 HOH HOH . 
F 6 HOH A 123 423 200 HOH HOH . 
F 6 HOH A 124 424 43 HOH HOH . 
F 6 HOH A 125 425 148 HOH HOH . 
F 6 HOH A 126 426 98 HOH HOH . 
F 6 HOH A 127 427 171 HOH HOH . 
F 6 HOH A 128 428 241 HOH HOH . 
F 6 HOH A 129 429 153 HOH HOH . 
F 6 HOH A 130 430 186 HOH HOH . 
F 6 HOH A 131 431 188 HOH HOH . 
F 6 HOH A 132 432 106 HOH HOH . 
F 6 HOH A 133 433 31 HOH HOH . 
F 6 HOH A 134 434 191 HOH HOH . 
F 6 HOH A 135 435 145 HOH HOH . 
F 6 HOH A 136 436 139 HOH HOH . 
F 6 HOH A 137 437 80 HOH HOH . 
F 6 HOH A 138 438 232 HOH HOH . 
F 6 HOH A 139 439 158 HOH HOH . 
F 6 HOH A 140 440 76 HOH HOH . 
F 6 HOH A 141 441 204 HOH HOH . 
F 6 HOH A 142 442 137 HOH HOH . 
F 6 HOH A 143 443 221 HOH HOH . 
F 6 HOH A 144 444 70 HOH HOH . 
F 6 HOH A 145 445 108 HOH HOH . 
F 6 HOH A 146 446 111 HOH HOH . 
F 6 HOH A 147 447 140 HOH HOH . 
F 6 HOH A 148 448 206 HOH HOH . 
F 6 HOH A 149 449 161 HOH HOH . 
F 6 HOH A 150 450 131 HOH HOH . 
F 6 HOH A 151 451 247 HOH HOH . 
F 6 HOH A 152 452 169 HOH HOH . 
F 6 HOH A 153 453 243 HOH HOH . 
F 6 HOH A 154 454 212 HOH HOH . 
F 6 HOH A 155 455 215 HOH HOH . 
F 6 HOH A 156 456 73 HOH HOH . 
F 6 HOH A 157 457 228 HOH HOH . 
F 6 HOH A 158 458 183 HOH HOH . 
F 6 HOH A 159 459 59 HOH HOH . 
F 6 HOH A 160 460 142 HOH HOH . 
F 6 HOH A 161 461 179 HOH HOH . 
F 6 HOH A 162 462 245 HOH HOH . 
F 6 HOH A 163 463 175 HOH HOH . 
F 6 HOH A 164 464 170 HOH HOH . 
F 6 HOH A 165 465 195 HOH HOH . 
F 6 HOH A 166 466 152 HOH HOH . 
F 6 HOH A 167 467 65 HOH HOH . 
F 6 HOH A 168 468 208 HOH HOH . 
F 6 HOH A 169 469 181 HOH HOH . 
F 6 HOH A 170 470 61 HOH HOH . 
F 6 HOH A 171 471 233 HOH HOH . 
F 6 HOH A 172 472 144 HOH HOH . 
F 6 HOH A 173 473 225 HOH HOH . 
G 6 HOH D 1 201 77 HOH HOH . 
G 6 HOH D 2 202 71 HOH HOH . 
G 6 HOH D 3 203 47 HOH HOH . 
G 6 HOH D 4 204 58 HOH HOH . 
G 6 HOH D 5 205 68 HOH HOH . 
G 6 HOH D 6 206 240 HOH HOH . 
G 6 HOH D 7 207 220 HOH HOH . 
G 6 HOH D 8 208 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7ZO . . . C 3 27.313 -10.303 11.841 1 29.95 ? C4 7ZO 201 A 1 
HETATM 2 C C5 7ZO . . . C 3 25.289 -9.385 12.206 1 31.85 ? C5 7ZO 201 A 1 
HETATM 3 C C6 7ZO . . . C 3 23.97 -10.706 18.097 1 32.17 ? C6 7ZO 201 A 1 
HETATM 4 C C7 7ZO . . . C 3 23.485 -9.403 18.153 1 32.95 ? C7 7ZO 201 A 1 
HETATM 5 C C8 7ZO . . . C 3 25.539 -10.03 16.397 1 29.11 ? C8 7ZO 201 A 1 
HETATM 6 C C10 7ZO . . . C 3 26.384 -10.208 14.032 1 28.99 ? C10 7ZO 201 A 1 
HETATM 7 C C1 7ZO . . . C 3 23.97 -8.414 17.302 1 31.18 ? C1 7ZO 201 A 1 
HETATM 8 C C2 7ZO . . . C 3 24.991 -8.742 16.416 1 29.69 ? C2 7ZO 201 A 1 
HETATM 9 C C3 7ZO . . . C 3 24.993 -11.027 17.212 1 29.63 ? C3 7ZO 201 A 1 
HETATM 10 C C9 7ZO . . . C 3 27.433 -10.592 13.189 1 27.64 ? C9 7ZO 201 A 1 
HETATM 11 C C11 7ZO . . . C 3 22.254 -10.529 19.714 1 36.6 ? C11 7ZO 201 A 1 
HETATM 12 C C12 7ZO . . . C 3 23.209 -11.529 19.096 1 35.11 ? C12 7ZO 201 A 1 
HETATM 13 N N13 7ZO . . . C 3 26.242 -9.693 11.329 1 33.91 ? N13 7ZO 201 A 1 
HETATM 14 N N14 7ZO . . . C 3 25.287 -9.603 13.525 1 31.33 ? N14 7ZO 201 A 1 
HETATM 15 N N15 7ZO . . . C 3 22.481 -9.324 19.125 1 33.39 ? N15 7ZO 201 A 1 
HETATM 16 N N16 7ZO . . . C 3 26.386 -10.497 15.364 1 26.11 ? N16 7ZO 201 A 1 
HETATM 17 O O17 7ZO . . . C 3 21.399 -10.757 20.568 1 36.97 ? O17 7ZO 201 A 1 
HETATM 18 CL CL1 7ZO . . . C 3 28.848 -11.392 13.765 0.99 29.36 ? CL1 7ZO 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           506 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           18 
#