data_7GV4
#
_model_server_result.job_id            D7w3HdxDYjk0he3f9j3jRQ 
_model_server_result.datetime_utc      '2025-01-09 13:16:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7GV4 
#
_exptl.entry_id    7GV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.575 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(5-bromo-2-chloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7GV4 
_cell.length_a            67.76 
_cell.length_b            67.76 
_cell.length_c            166.73 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.88 -58.681881 27.788333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C12 H8 Br Cl N4 O' 
_chem_comp.formula_weight    339.575 
_chem_comp.id                A1ACA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(5-bromo-2-chloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C1 A1ACA doub 1 n y 
N C A1ACA sing 2 n y 
CL C A1ACA sing 3 n n 
C1 C2 A1ACA sing 4 n y 
C N3 A1ACA doub 5 n y 
C2 BR A1ACA sing 6 n n 
C2 C3 A1ACA doub 7 n y 
N3 C3 A1ACA sing 8 n y 
C3 N1 A1ACA sing 9 n n 
N1 C4 A1ACA sing 10 n n 
C4 C5 A1ACA doub 11 n y 
C4 C11 A1ACA sing 12 n y 
C5 C6 A1ACA sing 13 n y 
C11 C10 A1ACA doub 14 n y 
C6 C7 A1ACA doub 15 n y 
C10 C7 A1ACA sing 16 n y 
C10 C9 A1ACA sing 17 n n 
C7 N2 A1ACA sing 18 n n 
C9 C8 A1ACA sing 19 n n 
N2 C8 A1ACA sing 20 n n 
C8 O A1ACA doub 21 n n 
C5 H1 A1ACA sing 22 n n 
C6 H2 A1ACA sing 23 n n 
C1 H3 A1ACA sing 24 n n 
C9 H4 A1ACA sing 25 n n 
C9 H5 A1ACA sing 26 n n 
N2 H6 A1ACA sing 27 n n 
C11 H7 A1ACA sing 28 n n 
N1 H8 A1ACA sing 29 n n 
#
_atom_sites.entry_id                     7GV4 
_atom_sites.fract_transf_matrix[1][1]    0.014758 
_atom_sites.fract_transf_matrix[1][2]    0.008521 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1ACA A 1 201 1 A1ACA 763 . 
D 4 CL A 1 202 1 CL CL . 
E 5 DMS D 1 101 1 DMS DMS . 
F 6 HOH A 1 301 178 HOH HOH . 
F 6 HOH A 2 302 7 HOH HOH . 
F 6 HOH A 3 303 173 HOH HOH . 
F 6 HOH A 4 304 166 HOH HOH . 
F 6 HOH A 5 305 45 HOH HOH . 
F 6 HOH A 6 306 140 HOH HOH . 
F 6 HOH A 7 307 19 HOH HOH . 
F 6 HOH A 8 308 90 HOH HOH . 
F 6 HOH A 9 309 139 HOH HOH . 
F 6 HOH A 10 310 247 HOH HOH . 
F 6 HOH A 11 311 179 HOH HOH . 
F 6 HOH A 12 312 94 HOH HOH . 
F 6 HOH A 13 313 29 HOH HOH . 
F 6 HOH A 14 314 84 HOH HOH . 
F 6 HOH A 15 315 106 HOH HOH . 
F 6 HOH A 16 316 100 HOH HOH . 
F 6 HOH A 17 317 142 HOH HOH . 
F 6 HOH A 18 318 87 HOH HOH . 
F 6 HOH A 19 319 42 HOH HOH . 
F 6 HOH A 20 320 202 HOH HOH . 
F 6 HOH A 21 321 47 HOH HOH . 
F 6 HOH A 22 322 132 HOH HOH . 
F 6 HOH A 23 323 99 HOH HOH . 
F 6 HOH A 24 324 75 HOH HOH . 
F 6 HOH A 25 325 101 HOH HOH . 
F 6 HOH A 26 326 37 HOH HOH . 
F 6 HOH A 27 327 119 HOH HOH . 
F 6 HOH A 28 328 83 HOH HOH . 
F 6 HOH A 29 329 17 HOH HOH . 
F 6 HOH A 30 330 27 HOH HOH . 
F 6 HOH A 31 331 237 HOH HOH . 
F 6 HOH A 32 332 91 HOH HOH . 
F 6 HOH A 33 333 40 HOH HOH . 
F 6 HOH A 34 334 5 HOH HOH . 
F 6 HOH A 35 335 6 HOH HOH . 
F 6 HOH A 36 336 193 HOH HOH . 
F 6 HOH A 37 337 117 HOH HOH . 
F 6 HOH A 38 338 243 HOH HOH . 
F 6 HOH A 39 339 34 HOH HOH . 
F 6 HOH A 40 340 242 HOH HOH . 
F 6 HOH A 41 341 244 HOH HOH . 
F 6 HOH A 42 342 20 HOH HOH . 
F 6 HOH A 43 343 30 HOH HOH . 
F 6 HOH A 44 344 239 HOH HOH . 
F 6 HOH A 45 345 85 HOH HOH . 
F 6 HOH A 46 346 12 HOH HOH . 
F 6 HOH A 47 347 50 HOH HOH . 
F 6 HOH A 48 348 44 HOH HOH . 
F 6 HOH A 49 349 14 HOH HOH . 
F 6 HOH A 50 350 145 HOH HOH . 
F 6 HOH A 51 351 122 HOH HOH . 
F 6 HOH A 52 352 151 HOH HOH . 
F 6 HOH A 53 353 24 HOH HOH . 
F 6 HOH A 54 354 96 HOH HOH . 
F 6 HOH A 55 355 175 HOH HOH . 
F 6 HOH A 56 356 4 HOH HOH . 
F 6 HOH A 57 357 124 HOH HOH . 
F 6 HOH A 58 358 51 HOH HOH . 
F 6 HOH A 59 359 89 HOH HOH . 
F 6 HOH A 60 360 86 HOH HOH . 
F 6 HOH A 61 361 93 HOH HOH . 
F 6 HOH A 62 362 141 HOH HOH . 
F 6 HOH A 63 363 207 HOH HOH . 
F 6 HOH A 64 364 97 HOH HOH . 
F 6 HOH A 65 365 196 HOH HOH . 
F 6 HOH A 66 366 170 HOH HOH . 
F 6 HOH A 67 367 76 HOH HOH . 
F 6 HOH A 68 368 25 HOH HOH . 
F 6 HOH A 69 369 103 HOH HOH . 
F 6 HOH A 70 370 144 HOH HOH . 
F 6 HOH A 71 371 167 HOH HOH . 
F 6 HOH A 72 372 21 HOH HOH . 
F 6 HOH A 73 373 177 HOH HOH . 
F 6 HOH A 74 374 131 HOH HOH . 
F 6 HOH A 75 375 15 HOH HOH . 
F 6 HOH A 76 376 169 HOH HOH . 
F 6 HOH A 77 377 180 HOH HOH . 
F 6 HOH A 78 378 105 HOH HOH . 
F 6 HOH A 79 379 192 HOH HOH . 
F 6 HOH A 80 380 157 HOH HOH . 
F 6 HOH A 81 381 23 HOH HOH . 
F 6 HOH A 82 382 186 HOH HOH . 
F 6 HOH A 83 383 28 HOH HOH . 
F 6 HOH A 84 384 70 HOH HOH . 
F 6 HOH A 85 385 32 HOH HOH . 
F 6 HOH A 86 386 74 HOH HOH . 
F 6 HOH A 87 387 55 HOH HOH . 
F 6 HOH A 88 388 229 HOH HOH . 
F 6 HOH A 89 389 133 HOH HOH . 
F 6 HOH A 90 390 191 HOH HOH . 
F 6 HOH A 91 391 194 HOH HOH . 
F 6 HOH A 92 392 245 HOH HOH . 
F 6 HOH A 93 393 108 HOH HOH . 
F 6 HOH A 94 394 241 HOH HOH . 
F 6 HOH A 95 395 165 HOH HOH . 
F 6 HOH A 96 396 129 HOH HOH . 
F 6 HOH A 97 397 205 HOH HOH . 
F 6 HOH A 98 398 39 HOH HOH . 
F 6 HOH A 99 399 16 HOH HOH . 
F 6 HOH A 100 400 92 HOH HOH . 
F 6 HOH A 101 401 22 HOH HOH . 
F 6 HOH A 102 402 176 HOH HOH . 
F 6 HOH A 103 403 67 HOH HOH . 
F 6 HOH A 104 404 212 HOH HOH . 
F 6 HOH A 105 405 35 HOH HOH . 
F 6 HOH A 106 406 185 HOH HOH . 
F 6 HOH A 107 407 174 HOH HOH . 
F 6 HOH A 108 408 190 HOH HOH . 
F 6 HOH A 109 409 69 HOH HOH . 
F 6 HOH A 110 410 26 HOH HOH . 
F 6 HOH A 111 411 46 HOH HOH . 
F 6 HOH A 112 412 120 HOH HOH . 
F 6 HOH A 113 413 43 HOH HOH . 
F 6 HOH A 114 414 36 HOH HOH . 
F 6 HOH A 115 415 236 HOH HOH . 
F 6 HOH A 116 416 64 HOH HOH . 
F 6 HOH A 117 417 82 HOH HOH . 
F 6 HOH A 118 418 223 HOH HOH . 
F 6 HOH A 119 419 60 HOH HOH . 
F 6 HOH A 120 420 56 HOH HOH . 
F 6 HOH A 121 421 88 HOH HOH . 
F 6 HOH A 122 422 204 HOH HOH . 
F 6 HOH A 123 423 215 HOH HOH . 
F 6 HOH A 124 424 57 HOH HOH . 
F 6 HOH A 125 425 110 HOH HOH . 
F 6 HOH A 126 426 214 HOH HOH . 
F 6 HOH A 127 427 65 HOH HOH . 
F 6 HOH A 128 428 95 HOH HOH . 
F 6 HOH A 129 429 68 HOH HOH . 
F 6 HOH A 130 430 147 HOH HOH . 
F 6 HOH A 131 431 135 HOH HOH . 
F 6 HOH A 132 432 61 HOH HOH . 
F 6 HOH A 133 433 41 HOH HOH . 
F 6 HOH A 134 434 116 HOH HOH . 
F 6 HOH A 135 435 168 HOH HOH . 
F 6 HOH A 136 436 200 HOH HOH . 
F 6 HOH A 137 437 187 HOH HOH . 
F 6 HOH A 138 438 123 HOH HOH . 
F 6 HOH A 139 439 227 HOH HOH . 
F 6 HOH A 140 440 248 HOH HOH . 
F 6 HOH A 141 441 228 HOH HOH . 
F 6 HOH A 142 442 63 HOH HOH . 
F 6 HOH A 143 443 121 HOH HOH . 
F 6 HOH A 144 444 231 HOH HOH . 
F 6 HOH A 145 445 225 HOH HOH . 
F 6 HOH A 146 446 171 HOH HOH . 
F 6 HOH A 147 447 71 HOH HOH . 
F 6 HOH A 148 448 220 HOH HOH . 
F 6 HOH A 149 449 234 HOH HOH . 
F 6 HOH A 150 450 203 HOH HOH . 
F 6 HOH A 151 451 158 HOH HOH . 
F 6 HOH A 152 452 125 HOH HOH . 
F 6 HOH A 153 453 181 HOH HOH . 
F 6 HOH A 154 454 217 HOH HOH . 
F 6 HOH A 155 455 235 HOH HOH . 
F 6 HOH A 156 456 246 HOH HOH . 
F 6 HOH A 157 457 81 HOH HOH . 
F 6 HOH A 158 458 114 HOH HOH . 
F 6 HOH A 159 459 238 HOH HOH . 
F 6 HOH A 160 460 79 HOH HOH . 
F 6 HOH A 161 461 58 HOH HOH . 
F 6 HOH A 162 462 183 HOH HOH . 
F 6 HOH A 163 463 221 HOH HOH . 
F 6 HOH A 164 464 188 HOH HOH . 
F 6 HOH A 165 465 115 HOH HOH . 
F 6 HOH A 166 466 107 HOH HOH . 
F 6 HOH A 167 467 216 HOH HOH . 
F 6 HOH A 168 468 230 HOH HOH . 
F 6 HOH A 169 469 201 HOH HOH . 
F 6 HOH A 170 470 182 HOH HOH . 
F 6 HOH A 171 471 213 HOH HOH . 
F 6 HOH A 172 472 113 HOH HOH . 
F 6 HOH A 173 473 148 HOH HOH . 
F 6 HOH A 174 474 48 HOH HOH . 
F 6 HOH A 175 475 206 HOH HOH . 
F 6 HOH A 176 476 172 HOH HOH . 
F 6 HOH A 177 477 211 HOH HOH . 
G 6 HOH D 1 201 62 HOH HOH . 
G 6 HOH D 2 202 78 HOH HOH . 
G 6 HOH D 3 203 38 HOH HOH . 
G 6 HOH D 4 204 73 HOH HOH . 
G 6 HOH D 5 205 53 HOH HOH . 
G 6 HOH D 6 206 240 HOH HOH . 
G 6 HOH D 7 207 49 HOH HOH . 
G 6 HOH D 8 208 195 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1ACA . . . C 3 25.523 -10.171 16.484 1 28.04 ? C4 A1ACA 201 A 1 
HETATM 2 C C5 A1ACA . . . C 3 24.931 -8.904 16.523 1 28.72 ? C5 A1ACA 201 A 1 
HETATM 3 C C6 A1ACA . . . C 3 23.91 -8.623 17.422 1 29.3 ? C6 A1ACA 201 A 1 
HETATM 4 C C7 A1ACA . . . C 3 23.474 -9.637 18.27 1 30.94 ? C7 A1ACA 201 A 1 
HETATM 5 C C8 A1ACA . . . C 3 22.309 -10.82 19.839 1 34.92 ? C8 A1ACA 201 A 1 
HETATM 6 C C10 A1ACA . . . C 3 24.019 -10.916 18.209 1 29.28 ? C10 A1ACA 201 A 1 
HETATM 7 C C1 A1ACA . . . C 3 27.322 -10.264 11.928 1 32.79 ? C1 A1ACA 201 A 1 
HETATM 8 C C2 A1ACA . . . C 3 27.449 -10.608 13.259 1 30.36 ? C2 A1ACA 201 A 1 
HETATM 9 C C3 A1ACA . . . C 3 26.415 -10.254 14.154 1 30.21 ? C3 A1ACA 201 A 1 
HETATM 10 C C9 A1ACA . . . C 3 23.307 -11.773 19.216 1 32.24 ? C9 A1ACA 201 A 1 
HETATM 11 O O A1ACA . . . C 3 21.482 -11.083 20.71 1 35.86 ? O A1ACA 201 A 1 
HETATM 12 N N2 A1ACA . . . C 3 22.474 -9.606 19.249 1 33.1 ? N2 A1ACA 201 A 1 
HETATM 13 C C11 A1ACA . . . C 3 25.042 -11.189 17.312 1 27.87 ? C11 A1ACA 201 A 1 
HETATM 14 N N1 A1ACA . . . C 3 26.415 -10.584 15.476 1 28.35 ? N1 A1ACA 201 A 1 
HETATM 15 N N3 A1ACA . . . C 3 25.328 -9.632 13.665 1 33.15 ? N3 A1ACA 201 A 1 
HETATM 16 C C A1ACA . . . C 3 25.324 -9.378 12.369 1 34.5 ? C A1ACA 201 A 1 
HETATM 17 CL CL A1ACA . . . C 3 23.888 -8.6 11.781 0.41 34.58 ? CL A1ACA 201 A 1 
HETATM 18 BR BR A1ACA . . . C 3 29 -11.503 13.839 0.65 28.07 ? BR A1ACA 201 A 1 
HETATM 19 N N A1ACA . . . C 3 26.241 -9.637 11.453 1 33.33 ? N A1ACA 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           545 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#