data_7GVI
#
_model_server_result.job_id            UfkiujvuCNxnwzNFQSWNdQ 
_model_server_result.datetime_utc      '2025-01-09 13:08:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gvi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7GVI 
#
_exptl.entry_id    7GVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(5,6-dichloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7GVI 
_cell.length_a            67.59 
_cell.length_b            67.59 
_cell.length_c            166.28 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.795 -58.534657 27.713333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C12 H8 Cl2 N4 O' 
_chem_comp.formula_weight    295.124 
_chem_comp.id                A1ACL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(5,6-dichloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C A1ACL sing 1 n n 
N3 C A1ACL doub 2 n y 
N3 C11 A1ACL sing 3 n y 
C C1 A1ACL sing 4 n y 
C11 N2 A1ACL doub 5 n y 
C1 CL1 A1ACL sing 6 n n 
C1 C2 A1ACL doub 7 n y 
N2 C2 A1ACL sing 8 n y 
C2 N A1ACL sing 9 n n 
N C3 A1ACL sing 10 n n 
C3 C4 A1ACL doub 11 n y 
C3 C10 A1ACL sing 12 n y 
C4 C5 A1ACL sing 13 n y 
C10 C9 A1ACL doub 14 n y 
C5 C6 A1ACL doub 15 n y 
C9 C6 A1ACL sing 16 n y 
C9 C8 A1ACL sing 17 n n 
C6 N1 A1ACL sing 18 n n 
C8 C7 A1ACL sing 19 n n 
N1 C7 A1ACL sing 20 n n 
C7 O A1ACL doub 21 n n 
N1 H1 A1ACL sing 22 n n 
C4 H2 A1ACL sing 23 n n 
C5 H3 A1ACL sing 24 n n 
C8 H4 A1ACL sing 25 n n 
C8 H5 A1ACL sing 26 n n 
C10 H6 A1ACL sing 27 n n 
C11 H7 A1ACL sing 28 n n 
N H8 A1ACL sing 29 n n 
#
_atom_sites.entry_id                     7GVI 
_atom_sites.fract_transf_matrix[1][1]    0.014795 
_atom_sites.fract_transf_matrix[1][2]    0.008542 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1ACL A 1 201 1 A1ACL 764 . 
D 4 CL A 1 202 1 CL CL . 
E 5 DMS D 1 101 1 DMS DMS . 
F 6 HOH A 1 301 168 HOH HOH . 
F 6 HOH A 2 302 85 HOH HOH . 
F 6 HOH A 3 303 91 HOH HOH . 
F 6 HOH A 4 304 162 HOH HOH . 
F 6 HOH A 5 305 103 HOH HOH . 
F 6 HOH A 6 306 86 HOH HOH . 
F 6 HOH A 7 307 36 HOH HOH . 
F 6 HOH A 8 308 93 HOH HOH . 
F 6 HOH A 9 309 29 HOH HOH . 
F 6 HOH A 10 310 174 HOH HOH . 
F 6 HOH A 11 311 167 HOH HOH . 
F 6 HOH A 12 312 88 HOH HOH . 
F 6 HOH A 13 313 28 HOH HOH . 
F 6 HOH A 14 314 161 HOH HOH . 
F 6 HOH A 15 315 163 HOH HOH . 
F 6 HOH A 16 316 10 HOH HOH . 
F 6 HOH A 17 317 40 HOH HOH . 
F 6 HOH A 18 318 114 HOH HOH . 
F 6 HOH A 19 319 185 HOH HOH . 
F 6 HOH A 20 320 95 HOH HOH . 
F 6 HOH A 21 321 189 HOH HOH . 
F 6 HOH A 22 322 59 HOH HOH . 
F 6 HOH A 23 323 32 HOH HOH . 
F 6 HOH A 24 324 94 HOH HOH . 
F 6 HOH A 25 325 21 HOH HOH . 
F 6 HOH A 26 326 213 HOH HOH . 
F 6 HOH A 27 327 195 HOH HOH . 
F 6 HOH A 28 328 75 HOH HOH . 
F 6 HOH A 29 329 207 HOH HOH . 
F 6 HOH A 30 330 46 HOH HOH . 
F 6 HOH A 31 331 20 HOH HOH . 
F 6 HOH A 32 332 145 HOH HOH . 
F 6 HOH A 33 333 98 HOH HOH . 
F 6 HOH A 34 334 218 HOH HOH . 
F 6 HOH A 35 335 177 HOH HOH . 
F 6 HOH A 36 336 126 HOH HOH . 
F 6 HOH A 37 337 101 HOH HOH . 
F 6 HOH A 38 338 186 HOH HOH . 
F 6 HOH A 39 339 7 HOH HOH . 
F 6 HOH A 40 340 122 HOH HOH . 
F 6 HOH A 41 341 3 HOH HOH . 
F 6 HOH A 42 342 142 HOH HOH . 
F 6 HOH A 43 343 77 HOH HOH . 
F 6 HOH A 44 344 23 HOH HOH . 
F 6 HOH A 45 345 78 HOH HOH . 
F 6 HOH A 46 346 6 HOH HOH . 
F 6 HOH A 47 347 60 HOH HOH . 
F 6 HOH A 48 348 116 HOH HOH . 
F 6 HOH A 49 349 89 HOH HOH . 
F 6 HOH A 50 350 214 HOH HOH . 
F 6 HOH A 51 351 117 HOH HOH . 
F 6 HOH A 52 352 200 HOH HOH . 
F 6 HOH A 53 353 26 HOH HOH . 
F 6 HOH A 54 354 172 HOH HOH . 
F 6 HOH A 55 355 107 HOH HOH . 
F 6 HOH A 56 356 84 HOH HOH . 
F 6 HOH A 57 357 169 HOH HOH . 
F 6 HOH A 58 358 119 HOH HOH . 
F 6 HOH A 59 359 92 HOH HOH . 
F 6 HOH A 60 360 57 HOH HOH . 
F 6 HOH A 61 361 61 HOH HOH . 
F 6 HOH A 62 362 71 HOH HOH . 
F 6 HOH A 63 363 11 HOH HOH . 
F 6 HOH A 64 364 8 HOH HOH . 
F 6 HOH A 65 365 15 HOH HOH . 
F 6 HOH A 66 366 14 HOH HOH . 
F 6 HOH A 67 367 165 HOH HOH . 
F 6 HOH A 68 368 43 HOH HOH . 
F 6 HOH A 69 369 74 HOH HOH . 
F 6 HOH A 70 370 170 HOH HOH . 
F 6 HOH A 71 371 99 HOH HOH . 
F 6 HOH A 72 372 175 HOH HOH . 
F 6 HOH A 73 373 72 HOH HOH . 
F 6 HOH A 74 374 22 HOH HOH . 
F 6 HOH A 75 375 204 HOH HOH . 
F 6 HOH A 76 376 164 HOH HOH . 
F 6 HOH A 77 377 66 HOH HOH . 
F 6 HOH A 78 378 211 HOH HOH . 
F 6 HOH A 79 379 166 HOH HOH . 
F 6 HOH A 80 380 105 HOH HOH . 
F 6 HOH A 81 381 219 HOH HOH . 
F 6 HOH A 82 382 17 HOH HOH . 
F 6 HOH A 83 383 127 HOH HOH . 
F 6 HOH A 84 384 90 HOH HOH . 
F 6 HOH A 85 385 146 HOH HOH . 
F 6 HOH A 86 386 33 HOH HOH . 
F 6 HOH A 87 387 108 HOH HOH . 
F 6 HOH A 88 388 180 HOH HOH . 
F 6 HOH A 89 389 176 HOH HOH . 
F 6 HOH A 90 390 39 HOH HOH . 
F 6 HOH A 91 391 136 HOH HOH . 
F 6 HOH A 92 392 184 HOH HOH . 
F 6 HOH A 93 393 102 HOH HOH . 
F 6 HOH A 94 394 24 HOH HOH . 
F 6 HOH A 95 395 47 HOH HOH . 
F 6 HOH A 96 396 45 HOH HOH . 
F 6 HOH A 97 397 215 HOH HOH . 
F 6 HOH A 98 398 30 HOH HOH . 
F 6 HOH A 99 399 37 HOH HOH . 
F 6 HOH A 100 400 187 HOH HOH . 
F 6 HOH A 101 401 80 HOH HOH . 
F 6 HOH A 102 402 212 HOH HOH . 
F 6 HOH A 103 403 196 HOH HOH . 
F 6 HOH A 104 404 34 HOH HOH . 
F 6 HOH A 105 405 104 HOH HOH . 
F 6 HOH A 106 406 158 HOH HOH . 
F 6 HOH A 107 407 49 HOH HOH . 
F 6 HOH A 108 408 199 HOH HOH . 
F 6 HOH A 109 409 67 HOH HOH . 
F 6 HOH A 110 410 62 HOH HOH . 
F 6 HOH A 111 411 210 HOH HOH . 
F 6 HOH A 112 412 51 HOH HOH . 
F 6 HOH A 113 413 68 HOH HOH . 
F 6 HOH A 114 414 63 HOH HOH . 
F 6 HOH A 115 415 141 HOH HOH . 
F 6 HOH A 116 416 132 HOH HOH . 
F 6 HOH A 117 417 19 HOH HOH . 
F 6 HOH A 118 418 50 HOH HOH . 
F 6 HOH A 119 419 159 HOH HOH . 
F 6 HOH A 120 420 115 HOH HOH . 
F 6 HOH A 121 421 41 HOH HOH . 
F 6 HOH A 122 422 140 HOH HOH . 
F 6 HOH A 123 423 124 HOH HOH . 
F 6 HOH A 124 424 58 HOH HOH . 
F 6 HOH A 125 425 194 HOH HOH . 
F 6 HOH A 126 426 38 HOH HOH . 
F 6 HOH A 127 427 106 HOH HOH . 
F 6 HOH A 128 428 131 HOH HOH . 
F 6 HOH A 129 429 202 HOH HOH . 
F 6 HOH A 130 430 123 HOH HOH . 
F 6 HOH A 131 431 216 HOH HOH . 
F 6 HOH A 132 432 152 HOH HOH . 
F 6 HOH A 133 433 54 HOH HOH . 
F 6 HOH A 134 434 69 HOH HOH . 
F 6 HOH A 135 435 138 HOH HOH . 
F 6 HOH A 136 436 53 HOH HOH . 
F 6 HOH A 137 437 109 HOH HOH . 
F 6 HOH A 138 438 118 HOH HOH . 
F 6 HOH A 139 439 137 HOH HOH . 
F 6 HOH A 140 440 83 HOH HOH . 
F 6 HOH A 141 441 205 HOH HOH . 
F 6 HOH A 142 442 208 HOH HOH . 
F 6 HOH A 143 443 113 HOH HOH . 
F 6 HOH A 144 444 139 HOH HOH . 
F 6 HOH A 145 445 188 HOH HOH . 
F 6 HOH A 146 446 203 HOH HOH . 
F 6 HOH A 147 447 56 HOH HOH . 
F 6 HOH A 148 448 128 HOH HOH . 
F 6 HOH A 149 449 178 HOH HOH . 
F 6 HOH A 150 450 35 HOH HOH . 
F 6 HOH A 151 451 179 HOH HOH . 
F 6 HOH A 152 452 120 HOH HOH . 
G 6 HOH D 1 201 112 HOH HOH . 
G 6 HOH D 2 202 48 HOH HOH . 
G 6 HOH D 3 203 44 HOH HOH . 
G 6 HOH D 4 204 42 HOH HOH . 
G 6 HOH D 5 205 82 HOH HOH . 
G 6 HOH D 6 206 217 HOH HOH . 
G 6 HOH D 7 207 153 HOH HOH . 
G 6 HOH D 8 208 52 HOH HOH . 
G 6 HOH D 9 209 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1ACL . . . C 3 27.326 -10.314 13.236 1 31.36 ? C1 A1ACL 201 A 1 
HETATM 2 N N1 A1ACL . . . C 3 22.402 -9.387 19.172 1 35.08 ? N1 A1ACL 201 A 1 
HETATM 3 C C2 A1ACL . . . C 3 26.242 -10.031 14.092 1 33.74 ? C2 A1ACL 201 A 1 
HETATM 4 N N2 A1ACL . . . C 3 25.11 -9.446 13.641 1 35.99 ? N2 A1ACL 201 A 1 
HETATM 5 C C3 A1ACL . . . C 3 25.49 -9.994 16.468 1 32.46 ? C3 A1ACL 201 A 1 
HETATM 6 N N3 A1ACL . . . C 3 26.034 -9.371 11.434 1 38.05 ? N3 A1ACL 201 A 1 
HETATM 7 C C4 A1ACL . . . C 3 24.931 -8.712 16.512 1 34.33 ? C4 A1ACL 201 A 1 
HETATM 8 C C5 A1ACL . . . C 3 23.898 -8.416 17.393 1 35.57 ? C5 A1ACL 201 A 1 
HETATM 9 C C6 A1ACL . . . C 3 23.433 -9.424 18.231 1 35.54 ? C6 A1ACL 201 A 1 
HETATM 10 C C7 A1ACL . . . C 3 22.193 -10.605 19.738 1 38.25 ? C7 A1ACL 201 A 1 
HETATM 11 C C8 A1ACL . . . C 3 23.203 -11.565 19.147 1 34.57 ? C8 A1ACL 201 A 1 
HETATM 12 C C9 A1ACL . . . C 3 23.972 -10.706 18.189 1 34.46 ? C9 A1ACL 201 A 1 
HETATM 13 C C10 A1ACL . . . C 3 25.013 -10.991 17.317 1 32.36 ? C10 A1ACL 201 A 1 
HETATM 14 C C11 A1ACL . . . C 3 25.079 -9.169 12.338 1 35.79 ? C11 A1ACL 201 A 1 
HETATM 15 O O A1ACL . . . C 3 21.329 -10.865 20.568 1 41.05 ? O A1ACL 201 A 1 
HETATM 16 N N A1ACL . . . C 3 26.276 -10.433 15.389 1 30.91 ? N A1ACL 201 A 1 
HETATM 17 CL CL1 A1ACL . . . C 3 28.777 -11.077 13.762 0.8 27.9 ? CL1 A1ACL 201 A 1 
HETATM 18 C C A1ACL . . . C 3 27.143 -9.917 11.893 1 34.75 ? C A1ACL 201 A 1 
HETATM 19 CL CL A1ACL . . . C 3 28.438 -10.034 10.759 0.11 34.93 ? CL A1ACL 201 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           1101 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           19 
#