data_7GVM # _model_server_result.job_id zau_OSQ5732O43xSZE-4vw _model_server_result.datetime_utc '2025-01-09 12:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GVM # _exptl.entry_id 7GVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2,5-dichloropyridin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GVM _cell.length_a 67.744 _cell.length_b 67.744 _cell.length_c 166.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.872 -58.668025 27.811667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C13 H9 Cl2 N3 O' _chem_comp.formula_weight 294.136 _chem_comp.id A1ACR _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2,5-dichloropyridin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C7 A1ACR doub 1 n n C7 N1 A1ACR sing 2 n n C7 C6 A1ACR sing 3 n n N1 C8 A1ACR sing 4 n n C6 C5 A1ACR sing 5 n n C8 C5 A1ACR doub 6 n y C8 C9 A1ACR sing 7 n y C5 C4 A1ACR sing 8 n y C9 C10 A1ACR doub 9 n y C4 C3 A1ACR doub 10 n y C10 C3 A1ACR sing 11 n y C3 N A1ACR sing 12 n n N C2 A1ACR sing 13 n n C2 C1 A1ACR doub 14 n y C2 C11 A1ACR sing 15 n y CL1 C11 A1ACR sing 16 n n C1 C A1ACR sing 17 n y C11 C12 A1ACR doub 18 n y C CL A1ACR sing 19 n n C N2 A1ACR doub 20 n y C12 N2 A1ACR sing 21 n y C6 H1 A1ACR sing 22 n n C6 H2 A1ACR sing 23 n n C12 H3 A1ACR sing 24 n n C4 H4 A1ACR sing 25 n n C10 H5 A1ACR sing 26 n n C9 H6 A1ACR sing 27 n n N1 H7 A1ACR sing 28 n n C1 H8 A1ACR sing 29 n n N H9 A1ACR sing 30 n n # _atom_sites.entry_id 7GVM _atom_sites.fract_transf_matrix[1][1] 0.014761 _atom_sites.fract_transf_matrix[1][2] 0.008523 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACR A 1 201 1 A1ACR 774 . D 4 CL A 1 202 1 CL CL . E 5 DMS D 1 101 1 DMS DMS . F 6 HOH A 1 301 39 HOH HOH . F 6 HOH A 2 302 23 HOH HOH . F 6 HOH A 3 303 41 HOH HOH . F 6 HOH A 4 304 35 HOH HOH . F 6 HOH A 5 305 152 HOH HOH . F 6 HOH A 6 306 10 HOH HOH . F 6 HOH A 7 307 141 HOH HOH . F 6 HOH A 8 308 66 HOH HOH . F 6 HOH A 9 309 67 HOH HOH . F 6 HOH A 10 310 64 HOH HOH . F 6 HOH A 11 311 188 HOH HOH . F 6 HOH A 12 312 34 HOH HOH . F 6 HOH A 13 313 69 HOH HOH . F 6 HOH A 14 314 72 HOH HOH . F 6 HOH A 15 315 37 HOH HOH . F 6 HOH A 16 316 163 HOH HOH . F 6 HOH A 17 317 154 HOH HOH . F 6 HOH A 18 318 162 HOH HOH . F 6 HOH A 19 319 74 HOH HOH . F 6 HOH A 20 320 89 HOH HOH . F 6 HOH A 21 321 7 HOH HOH . F 6 HOH A 22 322 183 HOH HOH . F 6 HOH A 23 323 18 HOH HOH . F 6 HOH A 24 324 116 HOH HOH . F 6 HOH A 25 325 107 HOH HOH . F 6 HOH A 26 326 157 HOH HOH . F 6 HOH A 27 327 128 HOH HOH . F 6 HOH A 28 328 96 HOH HOH . F 6 HOH A 29 329 70 HOH HOH . F 6 HOH A 30 330 86 HOH HOH . F 6 HOH A 31 331 24 HOH HOH . F 6 HOH A 32 332 102 HOH HOH . F 6 HOH A 33 333 68 HOH HOH . F 6 HOH A 34 334 63 HOH HOH . F 6 HOH A 35 335 184 HOH HOH . F 6 HOH A 36 336 76 HOH HOH . F 6 HOH A 37 337 143 HOH HOH . F 6 HOH A 38 338 150 HOH HOH . F 6 HOH A 39 339 5 HOH HOH . F 6 HOH A 40 340 109 HOH HOH . F 6 HOH A 41 341 55 HOH HOH . F 6 HOH A 42 342 9 HOH HOH . F 6 HOH A 43 343 88 HOH HOH . F 6 HOH A 44 344 11 HOH HOH . F 6 HOH A 45 345 145 HOH HOH . F 6 HOH A 46 346 27 HOH HOH . F 6 HOH A 47 347 17 HOH HOH . F 6 HOH A 48 348 77 HOH HOH . F 6 HOH A 49 349 25 HOH HOH . F 6 HOH A 50 350 177 HOH HOH . F 6 HOH A 51 351 172 HOH HOH . F 6 HOH A 52 352 22 HOH HOH . F 6 HOH A 53 353 99 HOH HOH . F 6 HOH A 54 354 108 HOH HOH . F 6 HOH A 55 355 71 HOH HOH . F 6 HOH A 56 356 142 HOH HOH . F 6 HOH A 57 357 117 HOH HOH . F 6 HOH A 58 358 146 HOH HOH . F 6 HOH A 59 359 79 HOH HOH . F 6 HOH A 60 360 28 HOH HOH . F 6 HOH A 61 361 171 HOH HOH . F 6 HOH A 62 362 47 HOH HOH . F 6 HOH A 63 363 50 HOH HOH . F 6 HOH A 64 364 30 HOH HOH . F 6 HOH A 65 365 32 HOH HOH . F 6 HOH A 66 366 131 HOH HOH . F 6 HOH A 67 367 182 HOH HOH . F 6 HOH A 68 368 176 HOH HOH . F 6 HOH A 69 369 95 HOH HOH . F 6 HOH A 70 370 73 HOH HOH . F 6 HOH A 71 371 15 HOH HOH . F 6 HOH A 72 372 65 HOH HOH . F 6 HOH A 73 373 185 HOH HOH . F 6 HOH A 74 374 94 HOH HOH . F 6 HOH A 75 375 156 HOH HOH . F 6 HOH A 76 376 59 HOH HOH . F 6 HOH A 77 377 144 HOH HOH . F 6 HOH A 78 378 20 HOH HOH . F 6 HOH A 79 379 173 HOH HOH . F 6 HOH A 80 380 82 HOH HOH . F 6 HOH A 81 381 46 HOH HOH . F 6 HOH A 82 382 114 HOH HOH . F 6 HOH A 83 383 85 HOH HOH . F 6 HOH A 84 384 26 HOH HOH . F 6 HOH A 85 385 103 HOH HOH . F 6 HOH A 86 386 45 HOH HOH . F 6 HOH A 87 387 31 HOH HOH . F 6 HOH A 88 388 33 HOH HOH . F 6 HOH A 89 389 19 HOH HOH . F 6 HOH A 90 390 174 HOH HOH . F 6 HOH A 91 391 44 HOH HOH . F 6 HOH A 92 392 133 HOH HOH . F 6 HOH A 93 393 100 HOH HOH . F 6 HOH A 94 394 62 HOH HOH . F 6 HOH A 95 395 189 HOH HOH . F 6 HOH A 96 396 36 HOH HOH . F 6 HOH A 97 397 90 HOH HOH . F 6 HOH A 98 398 136 HOH HOH . F 6 HOH A 99 399 56 HOH HOH . F 6 HOH A 100 400 161 HOH HOH . F 6 HOH A 101 401 179 HOH HOH . F 6 HOH A 102 402 98 HOH HOH . F 6 HOH A 103 403 105 HOH HOH . F 6 HOH A 104 404 40 HOH HOH . F 6 HOH A 105 405 118 HOH HOH . F 6 HOH A 106 406 138 HOH HOH . F 6 HOH A 107 407 148 HOH HOH . F 6 HOH A 108 408 159 HOH HOH . F 6 HOH A 109 409 92 HOH HOH . F 6 HOH A 110 410 175 HOH HOH . F 6 HOH A 111 411 115 HOH HOH . F 6 HOH A 112 412 164 HOH HOH . F 6 HOH A 113 413 110 HOH HOH . F 6 HOH A 114 414 122 HOH HOH . F 6 HOH A 115 415 49 HOH HOH . F 6 HOH A 116 416 43 HOH HOH . F 6 HOH A 117 417 153 HOH HOH . F 6 HOH A 118 418 119 HOH HOH . F 6 HOH A 119 419 84 HOH HOH . F 6 HOH A 120 420 48 HOH HOH . F 6 HOH A 121 421 186 HOH HOH . F 6 HOH A 122 422 57 HOH HOH . F 6 HOH A 123 423 42 HOH HOH . F 6 HOH A 124 424 111 HOH HOH . F 6 HOH A 125 425 91 HOH HOH . F 6 HOH A 126 426 190 HOH HOH . F 6 HOH A 127 427 151 HOH HOH . F 6 HOH A 128 428 61 HOH HOH . F 6 HOH A 129 429 130 HOH HOH . G 6 HOH D 1 201 51 HOH HOH . G 6 HOH D 2 202 14 HOH HOH . G 6 HOH D 3 203 58 HOH HOH . G 6 HOH D 4 204 83 HOH HOH . G 6 HOH D 5 205 167 HOH HOH . G 6 HOH D 6 206 21 HOH HOH . G 6 HOH D 7 207 187 HOH HOH . G 6 HOH D 8 208 166 HOH HOH . G 6 HOH D 9 209 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 A1ACR . . . C 3 35.068 -32.723 8.499 1 31.71 ? C6 A1ACR 201 A 1 HETATM 2 C C5 A1ACR . . . C 3 36.186 -32.512 9.487 1 29.56 ? C5 A1ACR 201 A 1 HETATM 3 C C11 A1ACR . . . C 3 38.125 -29.672 14.479 1 26.67 ? C11 A1ACR 201 A 1 HETATM 4 C C7 A1ACR . . . C 3 35.424 -34.078 7.867 1 33.94 ? C7 A1ACR 201 A 1 HETATM 5 C C12 A1ACR . . . C 3 38.3 -29.886 15.842 1 29.6 ? C12 A1ACR 201 A 1 HETATM 6 C C4 A1ACR . . . C 3 36.4 -31.469 10.395 1 27.56 ? C4 A1ACR 201 A 1 HETATM 7 C C2 A1ACR . . . C 3 37.927 -30.786 13.58 1 27.43 ? C2 A1ACR 201 A 1 HETATM 8 C C10 A1ACR . . . C 3 38.492 -32.648 11.119 1 27.48 ? C10 A1ACR 201 A 1 HETATM 9 C C9 A1ACR . . . C 3 38.251 -33.695 10.204 1 29.21 ? C9 A1ACR 201 A 1 HETATM 10 N N1 A1ACR . . . C 3 36.639 -34.53 8.436 1 30.97 ? N1 A1ACR 201 A 1 HETATM 11 CL CL1 A1ACR . . . C 3 38.149 -28.103 13.872 0.94 25.73 ? CL1 A1ACR 201 A 1 HETATM 12 N N2 A1ACR . . . C 3 38.279 -31.138 16.381 1 30.69 ? N2 A1ACR 201 A 1 HETATM 13 C C A1ACR . . . C 3 38.067 -32.178 15.52 1 32.62 ? C A1ACR 201 A 1 HETATM 14 CL CL A1ACR . . . C 3 38.023 -33.756 16.214 0.82 35.99 ? CL A1ACR 201 A 1 HETATM 15 C C1 A1ACR . . . C 3 37.88 -32.089 14.156 1 29.83 ? C1 A1ACR 201 A 1 HETATM 16 N N A1ACR . . . C 3 37.811 -30.544 12.232 1 27.2 ? N A1ACR 201 A 1 HETATM 17 C C3 A1ACR . . . C 3 37.577 -31.56 11.229 1 28.31 ? C3 A1ACR 201 A 1 HETATM 18 C C8 A1ACR . . . C 3 37.099 -33.609 9.398 1 30.26 ? C8 A1ACR 201 A 1 HETATM 19 O O A1ACR . . . C 3 34.801 -34.718 7.038 1 34.15 ? O A1ACR 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #