data_7GVR # _model_server_result.job_id po8DX-W1v5qm-H6HxELK9A _model_server_result.datetime_utc '2025-01-09 06:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GVR # _exptl.entry_id 7GVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2,5-dichloropyridin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GVR _cell.length_a 67.66 _cell.length_b 67.66 _cell.length_c 166.97 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.83 -58.595279 27.828333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C13 H9 Cl2 N3 O' _chem_comp.formula_weight 294.136 _chem_comp.id A1ACR _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2,5-dichloropyridin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C7 A1ACR doub 1 n n C7 N1 A1ACR sing 2 n n C7 C6 A1ACR sing 3 n n N1 C8 A1ACR sing 4 n n C6 C5 A1ACR sing 5 n n C8 C5 A1ACR doub 6 n y C8 C9 A1ACR sing 7 n y C5 C4 A1ACR sing 8 n y C9 C10 A1ACR doub 9 n y C4 C3 A1ACR doub 10 n y C10 C3 A1ACR sing 11 n y C3 N A1ACR sing 12 n n N C2 A1ACR sing 13 n n C2 C1 A1ACR doub 14 n y C2 C11 A1ACR sing 15 n y CL1 C11 A1ACR sing 16 n n C1 C A1ACR sing 17 n y C11 C12 A1ACR doub 18 n y C CL A1ACR sing 19 n n C N2 A1ACR doub 20 n y C12 N2 A1ACR sing 21 n y C6 H1 A1ACR sing 22 n n C6 H2 A1ACR sing 23 n n C12 H3 A1ACR sing 24 n n C4 H4 A1ACR sing 25 n n C10 H5 A1ACR sing 26 n n C9 H6 A1ACR sing 27 n n N1 H7 A1ACR sing 28 n n C1 H8 A1ACR sing 29 n n N H9 A1ACR sing 30 n n # _atom_sites.entry_id 7GVR _atom_sites.fract_transf_matrix[1][1] 0.01478 _atom_sites.fract_transf_matrix[1][2] 0.008533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACR A 1 201 1 A1ACR 774 . D 4 CL A 1 202 1 CL CL . E 5 DMS D 1 101 1 DMS DMS . F 6 HOH A 1 301 39 HOH HOH . F 6 HOH A 2 302 35 HOH HOH . F 6 HOH A 3 303 23 HOH HOH . F 6 HOH A 4 304 67 HOH HOH . F 6 HOH A 5 305 34 HOH HOH . F 6 HOH A 6 306 141 HOH HOH . F 6 HOH A 7 307 41 HOH HOH . F 6 HOH A 8 308 10 HOH HOH . F 6 HOH A 9 309 64 HOH HOH . F 6 HOH A 10 310 157 HOH HOH . F 6 HOH A 11 311 66 HOH HOH . F 6 HOH A 12 312 152 HOH HOH . F 6 HOH A 13 313 188 HOH HOH . F 6 HOH A 14 314 74 HOH HOH . F 6 HOH A 15 315 116 HOH HOH . F 6 HOH A 16 316 107 HOH HOH . F 6 HOH A 17 317 69 HOH HOH . F 6 HOH A 18 318 72 HOH HOH . F 6 HOH A 19 319 24 HOH HOH . F 6 HOH A 20 320 37 HOH HOH . F 6 HOH A 21 321 7 HOH HOH . F 6 HOH A 22 322 89 HOH HOH . F 6 HOH A 23 323 154 HOH HOH . F 6 HOH A 24 324 150 HOH HOH . F 6 HOH A 25 325 68 HOH HOH . F 6 HOH A 26 326 162 HOH HOH . F 6 HOH A 27 327 163 HOH HOH . F 6 HOH A 28 328 128 HOH HOH . F 6 HOH A 29 329 70 HOH HOH . F 6 HOH A 30 330 96 HOH HOH . F 6 HOH A 31 331 86 HOH HOH . F 6 HOH A 32 332 76 HOH HOH . F 6 HOH A 33 333 102 HOH HOH . F 6 HOH A 34 334 79 HOH HOH . F 6 HOH A 35 335 47 HOH HOH . F 6 HOH A 36 336 27 HOH HOH . F 6 HOH A 37 337 183 HOH HOH . F 6 HOH A 38 338 18 HOH HOH . F 6 HOH A 39 339 184 HOH HOH . F 6 HOH A 40 340 143 HOH HOH . F 6 HOH A 41 341 55 HOH HOH . F 6 HOH A 42 342 63 HOH HOH . F 6 HOH A 43 343 5 HOH HOH . F 6 HOH A 44 344 9 HOH HOH . F 6 HOH A 45 345 17 HOH HOH . F 6 HOH A 46 346 11 HOH HOH . F 6 HOH A 47 347 88 HOH HOH . F 6 HOH A 48 348 22 HOH HOH . F 6 HOH A 49 349 177 HOH HOH . F 6 HOH A 50 350 99 HOH HOH . F 6 HOH A 51 351 172 HOH HOH . F 6 HOH A 52 352 71 HOH HOH . F 6 HOH A 53 353 142 HOH HOH . F 6 HOH A 54 354 25 HOH HOH . F 6 HOH A 55 355 117 HOH HOH . F 6 HOH A 56 356 171 HOH HOH . F 6 HOH A 57 357 146 HOH HOH . F 6 HOH A 58 358 131 HOH HOH . F 6 HOH A 59 359 30 HOH HOH . F 6 HOH A 60 360 73 HOH HOH . F 6 HOH A 61 361 109 HOH HOH . F 6 HOH A 62 362 108 HOH HOH . F 6 HOH A 63 363 95 HOH HOH . F 6 HOH A 64 364 77 HOH HOH . F 6 HOH A 65 365 65 HOH HOH . F 6 HOH A 66 366 28 HOH HOH . F 6 HOH A 67 367 185 HOH HOH . F 6 HOH A 68 368 15 HOH HOH . F 6 HOH A 69 369 85 HOH HOH . F 6 HOH A 70 370 32 HOH HOH . F 6 HOH A 71 371 182 HOH HOH . F 6 HOH A 72 372 176 HOH HOH . F 6 HOH A 73 373 50 HOH HOH . F 6 HOH A 74 374 94 HOH HOH . F 6 HOH A 75 375 144 HOH HOH . F 6 HOH A 76 376 145 HOH HOH . F 6 HOH A 77 377 20 HOH HOH . F 6 HOH A 78 378 156 HOH HOH . F 6 HOH A 79 379 59 HOH HOH . F 6 HOH A 80 380 173 HOH HOH . F 6 HOH A 81 381 82 HOH HOH . F 6 HOH A 82 382 46 HOH HOH . F 6 HOH A 83 383 114 HOH HOH . F 6 HOH A 84 384 31 HOH HOH . F 6 HOH A 85 385 26 HOH HOH . F 6 HOH A 86 386 62 HOH HOH . F 6 HOH A 87 387 103 HOH HOH . F 6 HOH A 88 388 19 HOH HOH . F 6 HOH A 89 389 90 HOH HOH . F 6 HOH A 90 390 45 HOH HOH . F 6 HOH A 91 391 100 HOH HOH . F 6 HOH A 92 392 174 HOH HOH . F 6 HOH A 93 393 56 HOH HOH . F 6 HOH A 94 394 44 HOH HOH . F 6 HOH A 95 395 33 HOH HOH . F 6 HOH A 96 396 133 HOH HOH . F 6 HOH A 97 397 36 HOH HOH . F 6 HOH A 98 398 189 HOH HOH . F 6 HOH A 99 399 98 HOH HOH . F 6 HOH A 100 400 40 HOH HOH . F 6 HOH A 101 401 136 HOH HOH . F 6 HOH A 102 402 138 HOH HOH . F 6 HOH A 103 403 118 HOH HOH . F 6 HOH A 104 404 161 HOH HOH . F 6 HOH A 105 405 159 HOH HOH . F 6 HOH A 106 406 105 HOH HOH . F 6 HOH A 107 407 179 HOH HOH . F 6 HOH A 108 408 148 HOH HOH . F 6 HOH A 109 409 92 HOH HOH . F 6 HOH A 110 410 164 HOH HOH . F 6 HOH A 111 411 115 HOH HOH . F 6 HOH A 112 412 110 HOH HOH . F 6 HOH A 113 413 175 HOH HOH . F 6 HOH A 114 414 122 HOH HOH . F 6 HOH A 115 415 43 HOH HOH . F 6 HOH A 116 416 49 HOH HOH . F 6 HOH A 117 417 84 HOH HOH . F 6 HOH A 118 418 153 HOH HOH . F 6 HOH A 119 419 119 HOH HOH . F 6 HOH A 120 420 48 HOH HOH . F 6 HOH A 121 421 186 HOH HOH . F 6 HOH A 122 422 42 HOH HOH . F 6 HOH A 123 423 57 HOH HOH . F 6 HOH A 124 424 91 HOH HOH . F 6 HOH A 125 425 111 HOH HOH . F 6 HOH A 126 426 190 HOH HOH . F 6 HOH A 127 427 151 HOH HOH . F 6 HOH A 128 428 61 HOH HOH . F 6 HOH A 129 429 130 HOH HOH . G 6 HOH D 1 201 51 HOH HOH . G 6 HOH D 2 202 14 HOH HOH . G 6 HOH D 3 203 58 HOH HOH . G 6 HOH D 4 204 167 HOH HOH . G 6 HOH D 5 205 83 HOH HOH . G 6 HOH D 6 206 21 HOH HOH . G 6 HOH D 7 207 187 HOH HOH . G 6 HOH D 8 208 166 HOH HOH . G 6 HOH D 9 209 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 A1ACR . . . C 3 35.082 -32.716 8.564 1 35.49 ? C6 A1ACR 201 A 1 HETATM 2 C C5 A1ACR . . . C 3 36.21 -32.507 9.537 1 32.74 ? C5 A1ACR 201 A 1 HETATM 3 C C11 A1ACR . . . C 3 38.154 -29.656 14.518 1 28.78 ? C11 A1ACR 201 A 1 HETATM 4 C C7 A1ACR . . . C 3 35.427 -34.077 7.938 1 37.66 ? C7 A1ACR 201 A 1 HETATM 5 C C12 A1ACR . . . C 3 38.322 -29.863 15.875 1 31.72 ? C12 A1ACR 201 A 1 HETATM 6 C C4 A1ACR . . . C 3 36.427 -31.473 10.443 1 29.99 ? C4 A1ACR 201 A 1 HETATM 7 C C2 A1ACR . . . C 3 37.953 -30.766 13.618 1 29.76 ? C2 A1ACR 201 A 1 HETATM 8 C C10 A1ACR . . . C 3 38.517 -32.639 11.154 1 28.35 ? C10 A1ACR 201 A 1 HETATM 9 C C9 A1ACR . . . C 3 38.274 -33.687 10.239 1 31.39 ? C9 A1ACR 201 A 1 HETATM 10 N N1 A1ACR . . . C 3 36.643 -34.531 8.499 1 33.72 ? N1 A1ACR 201 A 1 HETATM 11 CL CL1 A1ACR . . . C 3 38.16 -28.087 13.923 0.89 27.48 ? CL1 A1ACR 201 A 1 HETATM 12 N N2 A1ACR . . . C 3 38.286 -31.108 16.419 1 33.01 ? N2 A1ACR 201 A 1 HETATM 13 C C A1ACR . . . C 3 38.078 -32.15 15.552 1 34.42 ? C A1ACR 201 A 1 HETATM 14 CL CL A1ACR . . . C 3 38.012 -33.718 16.24 0.53 35.57 ? CL A1ACR 201 A 1 HETATM 15 C C1 A1ACR . . . C 3 37.9 -32.066 14.194 1 32.48 ? C1 A1ACR 201 A 1 HETATM 16 N N A1ACR . . . C 3 37.835 -30.528 12.272 1 28.65 ? N A1ACR 201 A 1 HETATM 17 C C3 A1ACR . . . C 3 37.602 -31.555 11.269 1 29.29 ? C3 A1ACR 201 A 1 HETATM 18 C C8 A1ACR . . . C 3 37.117 -33.603 9.444 1 32.72 ? C8 A1ACR 201 A 1 HETATM 19 O O A1ACR . . . C 3 34.802 -34.716 7.112 1 36.31 ? O A1ACR 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 19 #