data_7GW2 # _model_server_result.job_id uVB6YYQbNl1ZZnQ8jK5ZTw _model_server_result.datetime_utc '2025-01-09 14:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 7GW2 # _exptl.entry_id 7GW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GW2 _cell.length_a 67.49 _cell.length_b 67.49 _cell.length_c 166.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.745 -58.448055 27.671667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 118 n n S C1 DMS sing 119 n n S C2 DMS sing 120 n n C1 H11 DMS sing 121 n n C1 H12 DMS sing 122 n n C1 H13 DMS sing 123 n n C2 H21 DMS sing 124 n n C2 H22 DMS sing 125 n n C2 H23 DMS sing 126 n n # _atom_sites.entry_id 7GW2 _atom_sites.fract_transf_matrix[1][1] 0.014817 _atom_sites.fract_transf_matrix[1][2] 0.008555 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACW A 1 201 201 A1ACW 099 . D 4 CL A 1 202 1 CL CL . E 5 DMS D 1 101 1 DMS DMS . F 6 HOH A 1 301 75 HOH HOH . F 6 HOH A 2 302 29 HOH HOH . F 6 HOH A 3 303 9 HOH HOH . F 6 HOH A 4 304 90 HOH HOH . F 6 HOH A 5 305 60 HOH HOH . F 6 HOH A 6 306 43 HOH HOH . F 6 HOH A 7 307 91 HOH HOH . F 6 HOH A 8 308 112 HOH HOH . F 6 HOH A 9 309 153 HOH HOH . F 6 HOH A 10 310 94 HOH HOH . F 6 HOH A 11 311 30 HOH HOH . F 6 HOH A 12 312 165 HOH HOH . F 6 HOH A 13 313 81 HOH HOH . F 6 HOH A 14 314 184 HOH HOH . F 6 HOH A 15 315 89 HOH HOH . F 6 HOH A 16 316 173 HOH HOH . F 6 HOH A 17 317 177 HOH HOH . F 6 HOH A 18 318 93 HOH HOH . F 6 HOH A 19 319 92 HOH HOH . F 6 HOH A 20 320 148 HOH HOH . F 6 HOH A 21 321 42 HOH HOH . F 6 HOH A 22 322 140 HOH HOH . F 6 HOH A 23 323 191 HOH HOH . F 6 HOH A 24 324 146 HOH HOH . F 6 HOH A 25 325 96 HOH HOH . F 6 HOH A 26 326 11 HOH HOH . F 6 HOH A 27 327 161 HOH HOH . F 6 HOH A 28 328 175 HOH HOH . F 6 HOH A 29 329 27 HOH HOH . F 6 HOH A 30 330 8 HOH HOH . F 6 HOH A 31 331 99 HOH HOH . F 6 HOH A 32 332 152 HOH HOH . F 6 HOH A 33 333 149 HOH HOH . F 6 HOH A 34 334 95 HOH HOH . F 6 HOH A 35 335 33 HOH HOH . F 6 HOH A 36 336 168 HOH HOH . F 6 HOH A 37 337 20 HOH HOH . F 6 HOH A 38 338 23 HOH HOH . F 6 HOH A 39 339 192 HOH HOH . F 6 HOH A 40 340 136 HOH HOH . F 6 HOH A 41 341 125 HOH HOH . F 6 HOH A 42 342 180 HOH HOH . F 6 HOH A 43 343 138 HOH HOH . F 6 HOH A 44 344 45 HOH HOH . F 6 HOH A 45 345 189 HOH HOH . F 6 HOH A 46 346 129 HOH HOH . F 6 HOH A 47 347 101 HOH HOH . F 6 HOH A 48 348 7 HOH HOH . F 6 HOH A 49 349 88 HOH HOH . F 6 HOH A 50 350 188 HOH HOH . F 6 HOH A 51 351 59 HOH HOH . F 6 HOH A 52 352 137 HOH HOH . F 6 HOH A 53 353 63 HOH HOH . F 6 HOH A 54 354 115 HOH HOH . F 6 HOH A 55 355 15 HOH HOH . F 6 HOH A 56 356 162 HOH HOH . F 6 HOH A 57 357 87 HOH HOH . F 6 HOH A 58 358 26 HOH HOH . F 6 HOH A 59 359 97 HOH HOH . F 6 HOH A 60 360 34 HOH HOH . F 6 HOH A 61 361 5 HOH HOH . F 6 HOH A 62 362 111 HOH HOH . F 6 HOH A 63 363 106 HOH HOH . F 6 HOH A 64 364 83 HOH HOH . F 6 HOH A 65 365 10 HOH HOH . F 6 HOH A 66 366 52 HOH HOH . F 6 HOH A 67 367 164 HOH HOH . F 6 HOH A 68 368 44 HOH HOH . F 6 HOH A 69 369 28 HOH HOH . F 6 HOH A 70 370 130 HOH HOH . F 6 HOH A 71 371 124 HOH HOH . F 6 HOH A 72 372 187 HOH HOH . F 6 HOH A 73 373 104 HOH HOH . F 6 HOH A 74 374 22 HOH HOH . F 6 HOH A 75 375 73 HOH HOH . F 6 HOH A 76 376 57 HOH HOH . F 6 HOH A 77 377 61 HOH HOH . F 6 HOH A 78 378 78 HOH HOH . F 6 HOH A 79 379 68 HOH HOH . F 6 HOH A 80 380 107 HOH HOH . F 6 HOH A 81 381 31 HOH HOH . F 6 HOH A 82 382 16 HOH HOH . F 6 HOH A 83 383 32 HOH HOH . F 6 HOH A 84 384 55 HOH HOH . F 6 HOH A 85 385 19 HOH HOH . F 6 HOH A 86 386 109 HOH HOH . F 6 HOH A 87 387 25 HOH HOH . F 6 HOH A 88 388 47 HOH HOH . F 6 HOH A 89 389 71 HOH HOH . F 6 HOH A 90 390 41 HOH HOH . F 6 HOH A 91 391 159 HOH HOH . F 6 HOH A 92 392 38 HOH HOH . F 6 HOH A 93 393 85 HOH HOH . F 6 HOH A 94 394 54 HOH HOH . F 6 HOH A 95 395 163 HOH HOH . F 6 HOH A 96 396 39 HOH HOH . F 6 HOH A 97 397 58 HOH HOH . F 6 HOH A 98 398 56 HOH HOH . F 6 HOH A 99 399 135 HOH HOH . F 6 HOH A 100 400 21 HOH HOH . F 6 HOH A 101 401 120 HOH HOH . F 6 HOH A 102 402 24 HOH HOH . F 6 HOH A 103 403 108 HOH HOH . F 6 HOH A 104 404 79 HOH HOH . F 6 HOH A 105 405 37 HOH HOH . F 6 HOH A 106 406 82 HOH HOH . F 6 HOH A 107 407 174 HOH HOH . F 6 HOH A 108 408 18 HOH HOH . F 6 HOH A 109 409 67 HOH HOH . F 6 HOH A 110 410 46 HOH HOH . F 6 HOH A 111 411 62 HOH HOH . F 6 HOH A 112 412 86 HOH HOH . F 6 HOH A 113 413 76 HOH HOH . F 6 HOH A 114 414 126 HOH HOH . F 6 HOH A 115 415 49 HOH HOH . F 6 HOH A 116 416 66 HOH HOH . F 6 HOH A 117 417 84 HOH HOH . F 6 HOH A 118 418 118 HOH HOH . F 6 HOH A 119 419 176 HOH HOH . F 6 HOH A 120 420 98 HOH HOH . F 6 HOH A 121 421 133 HOH HOH . F 6 HOH A 122 422 166 HOH HOH . F 6 HOH A 123 423 36 HOH HOH . F 6 HOH A 124 424 172 HOH HOH . F 6 HOH A 125 425 102 HOH HOH . F 6 HOH A 126 426 74 HOH HOH . F 6 HOH A 127 427 132 HOH HOH . F 6 HOH A 128 428 160 HOH HOH . F 6 HOH A 129 429 141 HOH HOH . F 6 HOH A 130 430 53 HOH HOH . F 6 HOH A 131 431 128 HOH HOH . F 6 HOH A 132 432 145 HOH HOH . F 6 HOH A 133 433 131 HOH HOH . F 6 HOH A 134 434 178 HOH HOH . F 6 HOH A 135 435 121 HOH HOH . F 6 HOH A 136 436 100 HOH HOH . F 6 HOH A 137 437 65 HOH HOH . F 6 HOH A 138 438 183 HOH HOH . F 6 HOH A 139 439 186 HOH HOH . F 6 HOH A 140 440 103 HOH HOH . F 6 HOH A 141 441 116 HOH HOH . F 6 HOH A 142 442 127 HOH HOH . F 6 HOH A 143 443 190 HOH HOH . F 6 HOH A 144 444 169 HOH HOH . F 6 HOH A 145 445 110 HOH HOH . F 6 HOH A 146 446 167 HOH HOH . G 6 HOH D 1 201 171 HOH HOH . G 6 HOH D 2 202 170 HOH HOH . G 6 HOH D 3 203 117 HOH HOH . G 6 HOH D 4 204 48 HOH HOH . G 6 HOH D 5 205 64 HOH HOH . G 6 HOH D 6 206 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . E 5 17.19 -35.395 -1.084 0.8 46.71 ? S DMS 101 D 1 HETATM 2 O O DMS . A . E 5 16.827 -36.263 0.012 0.8 40.82 ? O DMS 101 D 1 HETATM 3 C C1 DMS . A . E 5 18.14 -34.105 -0.363 0.8 46.17 ? C1 DMS 101 D 1 HETATM 4 C C2 DMS . A . E 5 18.603 -36.262 -1.705 0.8 49.05 ? C2 DMS 101 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #