data_7GW2 # _model_server_result.job_id z1ZFUj1OnmV0lavMjqCgPA _model_server_result.datetime_utc '2025-01-09 14:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GW2 # _exptl.entry_id 7GW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.67 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2-chloro-5-fluoropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GW2 _cell.length_a 67.49 _cell.length_b 67.49 _cell.length_c 166.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.745 -58.448055 27.671667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C12 H8 Cl F N4 O' _chem_comp.formula_weight 278.67 _chem_comp.id A1ACW _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2-chloro-5-fluoropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C10 A1ACW doub 1 n y N3 C9 A1ACW sing 2 n y CL C9 A1ACW sing 3 n n C10 C11 A1ACW sing 4 n y C9 N2 A1ACW doub 5 n y C11 F A1ACW sing 6 n n C11 C8 A1ACW doub 7 n y N2 C8 A1ACW sing 8 n y C8 N1 A1ACW sing 9 n n N1 C1 A1ACW sing 10 n n C C1 A1ACW doub 11 n y C C5 A1ACW sing 12 n y C1 C2 A1ACW sing 13 n y C5 C4 A1ACW doub 14 n y C2 C3 A1ACW doub 15 n y C4 C3 A1ACW sing 16 n y C4 N A1ACW sing 17 n n C3 C7 A1ACW sing 18 n n N C6 A1ACW sing 19 n n C7 C6 A1ACW sing 20 n n C6 O A1ACW doub 21 n n C5 H1 A1ACW sing 22 n n C7 H2 A1ACW sing 23 n n C7 H3 A1ACW sing 24 n n C10 H4 A1ACW sing 25 n n C2 H5 A1ACW sing 26 n n N1 H6 A1ACW sing 27 n n N H7 A1ACW sing 28 n n C H8 A1ACW sing 29 n n # _atom_sites.entry_id 7GW2 _atom_sites.fract_transf_matrix[1][1] 0.014817 _atom_sites.fract_transf_matrix[1][2] 0.008555 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACW A 1 201 201 A1ACW 099 . D 4 CL A 1 202 1 CL CL . E 5 DMS D 1 101 1 DMS DMS . F 6 HOH A 1 301 75 HOH HOH . F 6 HOH A 2 302 29 HOH HOH . F 6 HOH A 3 303 9 HOH HOH . F 6 HOH A 4 304 90 HOH HOH . F 6 HOH A 5 305 60 HOH HOH . F 6 HOH A 6 306 43 HOH HOH . F 6 HOH A 7 307 91 HOH HOH . F 6 HOH A 8 308 112 HOH HOH . F 6 HOH A 9 309 153 HOH HOH . F 6 HOH A 10 310 94 HOH HOH . F 6 HOH A 11 311 30 HOH HOH . F 6 HOH A 12 312 165 HOH HOH . F 6 HOH A 13 313 81 HOH HOH . F 6 HOH A 14 314 184 HOH HOH . F 6 HOH A 15 315 89 HOH HOH . F 6 HOH A 16 316 173 HOH HOH . F 6 HOH A 17 317 177 HOH HOH . F 6 HOH A 18 318 93 HOH HOH . F 6 HOH A 19 319 92 HOH HOH . F 6 HOH A 20 320 148 HOH HOH . F 6 HOH A 21 321 42 HOH HOH . F 6 HOH A 22 322 140 HOH HOH . F 6 HOH A 23 323 191 HOH HOH . F 6 HOH A 24 324 146 HOH HOH . F 6 HOH A 25 325 96 HOH HOH . F 6 HOH A 26 326 11 HOH HOH . F 6 HOH A 27 327 161 HOH HOH . F 6 HOH A 28 328 175 HOH HOH . F 6 HOH A 29 329 27 HOH HOH . F 6 HOH A 30 330 8 HOH HOH . F 6 HOH A 31 331 99 HOH HOH . F 6 HOH A 32 332 152 HOH HOH . F 6 HOH A 33 333 149 HOH HOH . F 6 HOH A 34 334 95 HOH HOH . F 6 HOH A 35 335 33 HOH HOH . F 6 HOH A 36 336 168 HOH HOH . F 6 HOH A 37 337 20 HOH HOH . F 6 HOH A 38 338 23 HOH HOH . F 6 HOH A 39 339 192 HOH HOH . F 6 HOH A 40 340 136 HOH HOH . F 6 HOH A 41 341 125 HOH HOH . F 6 HOH A 42 342 180 HOH HOH . F 6 HOH A 43 343 138 HOH HOH . F 6 HOH A 44 344 45 HOH HOH . F 6 HOH A 45 345 189 HOH HOH . F 6 HOH A 46 346 129 HOH HOH . F 6 HOH A 47 347 101 HOH HOH . F 6 HOH A 48 348 7 HOH HOH . F 6 HOH A 49 349 88 HOH HOH . F 6 HOH A 50 350 188 HOH HOH . F 6 HOH A 51 351 59 HOH HOH . F 6 HOH A 52 352 137 HOH HOH . F 6 HOH A 53 353 63 HOH HOH . F 6 HOH A 54 354 115 HOH HOH . F 6 HOH A 55 355 15 HOH HOH . F 6 HOH A 56 356 162 HOH HOH . F 6 HOH A 57 357 87 HOH HOH . F 6 HOH A 58 358 26 HOH HOH . F 6 HOH A 59 359 97 HOH HOH . F 6 HOH A 60 360 34 HOH HOH . F 6 HOH A 61 361 5 HOH HOH . F 6 HOH A 62 362 111 HOH HOH . F 6 HOH A 63 363 106 HOH HOH . F 6 HOH A 64 364 83 HOH HOH . F 6 HOH A 65 365 10 HOH HOH . F 6 HOH A 66 366 52 HOH HOH . F 6 HOH A 67 367 164 HOH HOH . F 6 HOH A 68 368 44 HOH HOH . F 6 HOH A 69 369 28 HOH HOH . F 6 HOH A 70 370 130 HOH HOH . F 6 HOH A 71 371 124 HOH HOH . F 6 HOH A 72 372 187 HOH HOH . F 6 HOH A 73 373 104 HOH HOH . F 6 HOH A 74 374 22 HOH HOH . F 6 HOH A 75 375 73 HOH HOH . F 6 HOH A 76 376 57 HOH HOH . F 6 HOH A 77 377 61 HOH HOH . F 6 HOH A 78 378 78 HOH HOH . F 6 HOH A 79 379 68 HOH HOH . F 6 HOH A 80 380 107 HOH HOH . F 6 HOH A 81 381 31 HOH HOH . F 6 HOH A 82 382 16 HOH HOH . F 6 HOH A 83 383 32 HOH HOH . F 6 HOH A 84 384 55 HOH HOH . F 6 HOH A 85 385 19 HOH HOH . F 6 HOH A 86 386 109 HOH HOH . F 6 HOH A 87 387 25 HOH HOH . F 6 HOH A 88 388 47 HOH HOH . F 6 HOH A 89 389 71 HOH HOH . F 6 HOH A 90 390 41 HOH HOH . F 6 HOH A 91 391 159 HOH HOH . F 6 HOH A 92 392 38 HOH HOH . F 6 HOH A 93 393 85 HOH HOH . F 6 HOH A 94 394 54 HOH HOH . F 6 HOH A 95 395 163 HOH HOH . F 6 HOH A 96 396 39 HOH HOH . F 6 HOH A 97 397 58 HOH HOH . F 6 HOH A 98 398 56 HOH HOH . F 6 HOH A 99 399 135 HOH HOH . F 6 HOH A 100 400 21 HOH HOH . F 6 HOH A 101 401 120 HOH HOH . F 6 HOH A 102 402 24 HOH HOH . F 6 HOH A 103 403 108 HOH HOH . F 6 HOH A 104 404 79 HOH HOH . F 6 HOH A 105 405 37 HOH HOH . F 6 HOH A 106 406 82 HOH HOH . F 6 HOH A 107 407 174 HOH HOH . F 6 HOH A 108 408 18 HOH HOH . F 6 HOH A 109 409 67 HOH HOH . F 6 HOH A 110 410 46 HOH HOH . F 6 HOH A 111 411 62 HOH HOH . F 6 HOH A 112 412 86 HOH HOH . F 6 HOH A 113 413 76 HOH HOH . F 6 HOH A 114 414 126 HOH HOH . F 6 HOH A 115 415 49 HOH HOH . F 6 HOH A 116 416 66 HOH HOH . F 6 HOH A 117 417 84 HOH HOH . F 6 HOH A 118 418 118 HOH HOH . F 6 HOH A 119 419 176 HOH HOH . F 6 HOH A 120 420 98 HOH HOH . F 6 HOH A 121 421 133 HOH HOH . F 6 HOH A 122 422 166 HOH HOH . F 6 HOH A 123 423 36 HOH HOH . F 6 HOH A 124 424 172 HOH HOH . F 6 HOH A 125 425 102 HOH HOH . F 6 HOH A 126 426 74 HOH HOH . F 6 HOH A 127 427 132 HOH HOH . F 6 HOH A 128 428 160 HOH HOH . F 6 HOH A 129 429 141 HOH HOH . F 6 HOH A 130 430 53 HOH HOH . F 6 HOH A 131 431 128 HOH HOH . F 6 HOH A 132 432 145 HOH HOH . F 6 HOH A 133 433 131 HOH HOH . F 6 HOH A 134 434 178 HOH HOH . F 6 HOH A 135 435 121 HOH HOH . F 6 HOH A 136 436 100 HOH HOH . F 6 HOH A 137 437 65 HOH HOH . F 6 HOH A 138 438 183 HOH HOH . F 6 HOH A 139 439 186 HOH HOH . F 6 HOH A 140 440 103 HOH HOH . F 6 HOH A 141 441 116 HOH HOH . F 6 HOH A 142 442 127 HOH HOH . F 6 HOH A 143 443 190 HOH HOH . F 6 HOH A 144 444 169 HOH HOH . F 6 HOH A 145 445 110 HOH HOH . F 6 HOH A 146 446 167 HOH HOH . G 6 HOH D 1 201 171 HOH HOH . G 6 HOH D 2 202 170 HOH HOH . G 6 HOH D 3 203 117 HOH HOH . G 6 HOH D 4 204 48 HOH HOH . G 6 HOH D 5 205 64 HOH HOH . G 6 HOH D 6 206 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1ACW . . . C 3 23.346 -9.385 18.211 1 20.46 ? C4 A1ACW 201 A 1 HETATM 2 C C5 A1ACW . . . C 3 23.834 -8.436 17.312 1 19.24 ? C5 A1ACW 201 A 1 HETATM 3 C C6 A1ACW . . . C 3 22.096 -10.438 19.806 1 24.54 ? C6 A1ACW 201 A 1 HETATM 4 C C7 A1ACW . . . C 3 23.07 -11.462 19.26 1 22.56 ? C7 A1ACW 201 A 1 HETATM 5 C C8 A1ACW . . . C 3 26.339 -10.256 14.174 1 18.63 ? C8 A1ACW 201 A 1 HETATM 6 C C10 A1ACW . . . C 3 27.293 -10.543 12.007 1 19.98 ? C10 A1ACW 201 A 1 HETATM 7 C C1 A1ACW . . . C 3 25.298 -10.144 16.413 1 17.83 ? C1 A1ACW 201 A 1 HETATM 8 C C2 A1ACW . . . C 3 24.867 -11.048 17.372 1 18.31 ? C2 A1ACW 201 A 1 HETATM 9 C C3 A1ACW . . . C 3 23.847 -10.684 18.24 1 20.18 ? C3 A1ACW 201 A 1 HETATM 10 C C9 A1ACW . . . C 3 25.329 -9.516 12.295 1 22.95 ? C9 A1ACW 201 A 1 HETATM 11 C C11 A1ACW . . . C 3 27.362 -10.76 13.363 1 17.15 ? C11 A1ACW 201 A 1 HETATM 12 CL CL A1ACW . . . C 3 23.944 -8.726 11.595 0.59 24.45 ? CL A1ACW 201 A 1 HETATM 13 N N2 A1ACW . . . C 3 25.282 -9.661 13.603 1 19.94 ? N2 A1ACW 201 A 1 HETATM 14 N N3 A1ACW . . . C 3 26.261 -9.889 11.438 1 22.48 ? N3 A1ACW 201 A 1 HETATM 15 F F A1ACW . . . C 3 28.418 -11.388 13.905 1 17.73 ? F A1ACW 201 A 1 HETATM 16 N N1 A1ACW . . . C 3 26.223 -10.604 15.461 1 16.19 ? N1 A1ACW 201 A 1 HETATM 17 O O A1ACW . . . C 3 21.249 -10.619 20.674 1 25.09 ? O A1ACW 201 A 1 HETATM 18 N N A1ACW . . . C 3 22.324 -9.264 19.16 1 22.49 ? N A1ACW 201 A 1 HETATM 19 C C A1ACW . . . C 3 24.816 -8.828 16.413 1 18.26 ? C A1ACW 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #