data_7GW4
#
_model_server_result.job_id            6RWa13cAifhI9IZ4YNPeng 
_model_server_result.datetime_utc      '2025-01-09 13:26:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gw4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7GW4 
#
_exptl.entry_id    7GW4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.67 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(2-chloro-5-fluoropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7GW4 
_cell.length_a            67.54 
_cell.length_b            67.54 
_cell.length_c            166.15 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GW4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.77 -58.491356 27.691667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C12 H8 Cl F N4 O' 
_chem_comp.formula_weight    278.67 
_chem_comp.id                A1ACW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(2-chloro-5-fluoropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C10 A1ACW doub 1 n y 
N3 C9 A1ACW sing 2 n y 
CL C9 A1ACW sing 3 n n 
C10 C11 A1ACW sing 4 n y 
C9 N2 A1ACW doub 5 n y 
C11 F A1ACW sing 6 n n 
C11 C8 A1ACW doub 7 n y 
N2 C8 A1ACW sing 8 n y 
C8 N1 A1ACW sing 9 n n 
N1 C1 A1ACW sing 10 n n 
C C1 A1ACW doub 11 n y 
C C5 A1ACW sing 12 n y 
C1 C2 A1ACW sing 13 n y 
C5 C4 A1ACW doub 14 n y 
C2 C3 A1ACW doub 15 n y 
C4 C3 A1ACW sing 16 n y 
C4 N A1ACW sing 17 n n 
C3 C7 A1ACW sing 18 n n 
N C6 A1ACW sing 19 n n 
C7 C6 A1ACW sing 20 n n 
C6 O A1ACW doub 21 n n 
C5 H1 A1ACW sing 22 n n 
C7 H2 A1ACW sing 23 n n 
C7 H3 A1ACW sing 24 n n 
C10 H4 A1ACW sing 25 n n 
C2 H5 A1ACW sing 26 n n 
N1 H6 A1ACW sing 27 n n 
N H7 A1ACW sing 28 n n 
C H8 A1ACW sing 29 n n 
#
_atom_sites.entry_id                     7GW4 
_atom_sites.fract_transf_matrix[1][1]    0.014806 
_atom_sites.fract_transf_matrix[1][2]    0.008548 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017097 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1ACW A 1 201 201 A1ACW 099 . 
D 4 CL A 1 202 1 CL CL . 
E 5 DMS D 1 101 1 DMS DMS . 
F 6 HOH A 1 301 75 HOH HOH . 
F 6 HOH A 2 302 29 HOH HOH . 
F 6 HOH A 3 303 9 HOH HOH . 
F 6 HOH A 4 304 90 HOH HOH . 
F 6 HOH A 5 305 60 HOH HOH . 
F 6 HOH A 6 306 91 HOH HOH . 
F 6 HOH A 7 307 153 HOH HOH . 
F 6 HOH A 8 308 43 HOH HOH . 
F 6 HOH A 9 309 30 HOH HOH . 
F 6 HOH A 10 310 81 HOH HOH . 
F 6 HOH A 11 311 89 HOH HOH . 
F 6 HOH A 12 312 94 HOH HOH . 
F 6 HOH A 13 313 92 HOH HOH . 
F 6 HOH A 14 314 112 HOH HOH . 
F 6 HOH A 15 315 184 HOH HOH . 
F 6 HOH A 16 316 165 HOH HOH . 
F 6 HOH A 17 317 93 HOH HOH . 
F 6 HOH A 18 318 168 HOH HOH . 
F 6 HOH A 19 319 140 HOH HOH . 
F 6 HOH A 20 320 11 HOH HOH . 
F 6 HOH A 21 321 148 HOH HOH . 
F 6 HOH A 22 322 173 HOH HOH . 
F 6 HOH A 23 323 99 HOH HOH . 
F 6 HOH A 24 324 177 HOH HOH . 
F 6 HOH A 25 325 42 HOH HOH . 
F 6 HOH A 26 326 45 HOH HOH . 
F 6 HOH A 27 327 175 HOH HOH . 
F 6 HOH A 28 328 8 HOH HOH . 
F 6 HOH A 29 329 152 HOH HOH . 
F 6 HOH A 30 330 136 HOH HOH . 
F 6 HOH A 31 331 149 HOH HOH . 
F 6 HOH A 32 332 161 HOH HOH . 
F 6 HOH A 33 333 96 HOH HOH . 
F 6 HOH A 34 334 20 HOH HOH . 
F 6 HOH A 35 335 191 HOH HOH . 
F 6 HOH A 36 336 146 HOH HOH . 
F 6 HOH A 37 337 125 HOH HOH . 
F 6 HOH A 38 338 192 HOH HOH . 
F 6 HOH A 39 339 95 HOH HOH . 
F 6 HOH A 40 340 180 HOH HOH . 
F 6 HOH A 41 341 33 HOH HOH . 
F 6 HOH A 42 342 101 HOH HOH . 
F 6 HOH A 43 343 23 HOH HOH . 
F 6 HOH A 44 344 138 HOH HOH . 
F 6 HOH A 45 345 111 HOH HOH . 
F 6 HOH A 46 346 27 HOH HOH . 
F 6 HOH A 47 347 162 HOH HOH . 
F 6 HOH A 48 348 189 HOH HOH . 
F 6 HOH A 49 349 7 HOH HOH . 
F 6 HOH A 50 350 88 HOH HOH . 
F 6 HOH A 51 351 59 HOH HOH . 
F 6 HOH A 52 352 26 HOH HOH . 
F 6 HOH A 53 353 129 HOH HOH . 
F 6 HOH A 54 354 115 HOH HOH . 
F 6 HOH A 55 355 87 HOH HOH . 
F 6 HOH A 56 356 15 HOH HOH . 
F 6 HOH A 57 357 63 HOH HOH . 
F 6 HOH A 58 358 44 HOH HOH . 
F 6 HOH A 59 359 106 HOH HOH . 
F 6 HOH A 60 360 52 HOH HOH . 
F 6 HOH A 61 361 137 HOH HOH . 
F 6 HOH A 62 362 97 HOH HOH . 
F 6 HOH A 63 363 10 HOH HOH . 
F 6 HOH A 64 364 34 HOH HOH . 
F 6 HOH A 65 365 5 HOH HOH . 
F 6 HOH A 66 366 83 HOH HOH . 
F 6 HOH A 67 367 164 HOH HOH . 
F 6 HOH A 68 368 57 HOH HOH . 
F 6 HOH A 69 369 28 HOH HOH . 
F 6 HOH A 70 370 104 HOH HOH . 
F 6 HOH A 71 371 124 HOH HOH . 
F 6 HOH A 72 372 78 HOH HOH . 
F 6 HOH A 73 373 22 HOH HOH . 
F 6 HOH A 74 374 188 HOH HOH . 
F 6 HOH A 75 375 16 HOH HOH . 
F 6 HOH A 76 376 68 HOH HOH . 
F 6 HOH A 77 377 32 HOH HOH . 
F 6 HOH A 78 378 55 HOH HOH . 
F 6 HOH A 79 379 71 HOH HOH . 
F 6 HOH A 80 380 107 HOH HOH . 
F 6 HOH A 81 381 73 HOH HOH . 
F 6 HOH A 82 382 130 HOH HOH . 
F 6 HOH A 83 383 31 HOH HOH . 
F 6 HOH A 84 384 19 HOH HOH . 
F 6 HOH A 85 385 25 HOH HOH . 
F 6 HOH A 86 386 163 HOH HOH . 
F 6 HOH A 87 387 109 HOH HOH . 
F 6 HOH A 88 388 61 HOH HOH . 
F 6 HOH A 89 389 58 HOH HOH . 
F 6 HOH A 90 390 47 HOH HOH . 
F 6 HOH A 91 391 85 HOH HOH . 
F 6 HOH A 92 392 159 HOH HOH . 
F 6 HOH A 93 393 187 HOH HOH . 
F 6 HOH A 94 394 38 HOH HOH . 
F 6 HOH A 95 395 41 HOH HOH . 
F 6 HOH A 96 396 135 HOH HOH . 
F 6 HOH A 97 397 54 HOH HOH . 
F 6 HOH A 98 398 39 HOH HOH . 
F 6 HOH A 99 399 56 HOH HOH . 
F 6 HOH A 100 400 108 HOH HOH . 
F 6 HOH A 101 401 79 HOH HOH . 
F 6 HOH A 102 402 37 HOH HOH . 
F 6 HOH A 103 403 21 HOH HOH . 
F 6 HOH A 104 404 24 HOH HOH . 
F 6 HOH A 105 405 120 HOH HOH . 
F 6 HOH A 106 406 18 HOH HOH . 
F 6 HOH A 107 407 174 HOH HOH . 
F 6 HOH A 108 408 86 HOH HOH . 
F 6 HOH A 109 409 82 HOH HOH . 
F 6 HOH A 110 410 62 HOH HOH . 
F 6 HOH A 111 411 67 HOH HOH . 
F 6 HOH A 112 412 66 HOH HOH . 
F 6 HOH A 113 413 76 HOH HOH . 
F 6 HOH A 114 414 46 HOH HOH . 
F 6 HOH A 115 415 49 HOH HOH . 
F 6 HOH A 116 416 84 HOH HOH . 
F 6 HOH A 117 417 126 HOH HOH . 
F 6 HOH A 118 418 98 HOH HOH . 
F 6 HOH A 119 419 118 HOH HOH . 
F 6 HOH A 120 420 172 HOH HOH . 
F 6 HOH A 121 421 160 HOH HOH . 
F 6 HOH A 122 422 36 HOH HOH . 
F 6 HOH A 123 423 176 HOH HOH . 
F 6 HOH A 124 424 133 HOH HOH . 
F 6 HOH A 125 425 132 HOH HOH . 
F 6 HOH A 126 426 102 HOH HOH . 
F 6 HOH A 127 427 166 HOH HOH . 
F 6 HOH A 128 428 74 HOH HOH . 
F 6 HOH A 129 429 145 HOH HOH . 
F 6 HOH A 130 430 141 HOH HOH . 
F 6 HOH A 131 431 53 HOH HOH . 
F 6 HOH A 132 432 128 HOH HOH . 
F 6 HOH A 133 433 131 HOH HOH . 
F 6 HOH A 134 434 178 HOH HOH . 
F 6 HOH A 135 435 65 HOH HOH . 
F 6 HOH A 136 436 100 HOH HOH . 
F 6 HOH A 137 437 121 HOH HOH . 
F 6 HOH A 138 438 183 HOH HOH . 
F 6 HOH A 139 439 186 HOH HOH . 
F 6 HOH A 140 440 103 HOH HOH . 
F 6 HOH A 141 441 116 HOH HOH . 
F 6 HOH A 142 442 190 HOH HOH . 
F 6 HOH A 143 443 127 HOH HOH . 
F 6 HOH A 144 444 169 HOH HOH . 
F 6 HOH A 145 445 110 HOH HOH . 
F 6 HOH A 146 446 167 HOH HOH . 
G 6 HOH D 1 201 171 HOH HOH . 
G 6 HOH D 2 202 170 HOH HOH . 
G 6 HOH D 3 203 117 HOH HOH . 
G 6 HOH D 4 204 48 HOH HOH . 
G 6 HOH D 5 205 64 HOH HOH . 
G 6 HOH D 6 206 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1ACW . . . C 3 23.372 -9.384 18.219 1 21.6 ? C4 A1ACW 201 A 1 
HETATM 2 C C5 A1ACW . . . C 3 23.863 -8.431 17.325 1 20.97 ? C5 A1ACW 201 A 1 
HETATM 3 C C6 A1ACW . . . C 3 22.12 -10.44 19.809 1 26.02 ? C6 A1ACW 201 A 1 
HETATM 4 C C7 A1ACW . . . C 3 23.088 -11.466 19.256 1 23.69 ? C7 A1ACW 201 A 1 
HETATM 5 C C8 A1ACW . . . C 3 26.357 -10.258 14.175 1 20.3 ? C8 A1ACW 201 A 1 
HETATM 6 C C10 A1ACW . . . C 3 27.308 -10.544 12.007 1 21.44 ? C10 A1ACW 201 A 1 
HETATM 7 C C1 A1ACW . . . C 3 25.32 -10.139 16.416 1 19.29 ? C1 A1ACW 201 A 1 
HETATM 8 C C2 A1ACW . . . C 3 24.887 -11.048 17.371 1 19.51 ? C2 A1ACW 201 A 1 
HETATM 9 C C3 A1ACW . . . C 3 23.867 -10.685 18.239 1 21.46 ? C3 A1ACW 201 A 1 
HETATM 10 C C9 A1ACW . . . C 3 25.347 -9.513 12.297 1 24.92 ? C9 A1ACW 201 A 1 
HETATM 11 C C11 A1ACW . . . C 3 27.379 -10.761 13.362 1 18.54 ? C11 A1ACW 201 A 1 
HETATM 12 CL CL A1ACW . . . C 3 23.97 -8.715 11.6 0.44 25.74 ? CL A1ACW 201 A 1 
HETATM 13 N N2 A1ACW . . . C 3 25.301 -9.658 13.607 1 22.17 ? N2 A1ACW 201 A 1 
HETATM 14 N N3 A1ACW . . . C 3 26.277 -9.889 11.441 1 24.14 ? N3 A1ACW 201 A 1 
HETATM 15 F F A1ACW . . . C 3 28.442 -11.382 13.899 1 19.51 ? F A1ACW 201 A 1 
HETATM 16 N N1 A1ACW . . . C 3 26.241 -10.603 15.46 1 17.47 ? N1 A1ACW 201 A 1 
HETATM 17 O O A1ACW . . . C 3 21.274 -10.622 20.679 1 27.01 ? O A1ACW 201 A 1 
HETATM 18 N N A1ACW . . . C 3 22.356 -9.263 19.171 1 23.78 ? N A1ACW 201 A 1 
HETATM 19 C C A1ACW . . . C 3 24.844 -8.823 16.423 1 19.55 ? C A1ACW 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#