data_7GX0 # _model_server_result.job_id EPakNLjEBFVvT0Z8slzwzQ _model_server_result.datetime_utc '2024-12-23 06:57:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GX0 # _exptl.entry_id 7GX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.689 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-6-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrimidine-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GX0 _cell.length_a 67.41 _cell.length_b 67.41 _cell.length_c 165.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.705 -58.378772 27.646667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C13 H8 Cl N5 O' _chem_comp.formula_weight 285.689 _chem_comp.id A1AB9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-6-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrimidine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C A1AB9 sing 1 n n N4 C A1AB9 doub 2 n y N4 C12 A1AB9 sing 3 n y C C1 A1AB9 sing 4 n y C12 N3 A1AB9 doub 5 n y C1 C2 A1AB9 sing 6 n n C1 C3 A1AB9 doub 7 n y C2 N A1AB9 trip 8 n n N3 C3 A1AB9 sing 9 n y C3 N1 A1AB9 sing 10 n n N1 C4 A1AB9 sing 11 n n C4 C5 A1AB9 doub 12 n y C4 C11 A1AB9 sing 13 n y C5 C6 A1AB9 sing 14 n y C11 C10 A1AB9 doub 15 n y C6 C7 A1AB9 doub 16 n y C10 C7 A1AB9 sing 17 n y C10 C9 A1AB9 sing 18 n n C7 N2 A1AB9 sing 19 n n C9 C8 A1AB9 sing 20 n n N2 C8 A1AB9 sing 21 n n C8 O A1AB9 doub 22 n n N1 H1 A1AB9 sing 23 n n C5 H2 A1AB9 sing 24 n n C6 H3 A1AB9 sing 25 n n C9 H4 A1AB9 sing 26 n n C9 H5 A1AB9 sing 27 n n C11 H6 A1AB9 sing 28 n n C12 H7 A1AB9 sing 29 n n N2 H8 A1AB9 sing 30 n n # _atom_sites.entry_id 7GX0 _atom_sites.fract_transf_matrix[1][1] 0.014835 _atom_sites.fract_transf_matrix[1][2] 0.008565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1AB9 A 1 201 1 A1AB9 766 . D 4 CL A 1 202 1 CL CL . E 4 CL A 1 203 2 CL CL . F 5 DMS D 1 101 1 DMS DMS . G 6 HOH A 1 301 213 HOH HOH . G 6 HOH A 2 302 61 HOH HOH . G 6 HOH A 3 303 226 HOH HOH . G 6 HOH A 4 304 63 HOH HOH . G 6 HOH A 5 305 116 HOH HOH . G 6 HOH A 6 306 108 HOH HOH . G 6 HOH A 7 307 139 HOH HOH . G 6 HOH A 8 308 111 HOH HOH . G 6 HOH A 9 309 59 HOH HOH . G 6 HOH A 10 310 223 HOH HOH . G 6 HOH A 11 311 117 HOH HOH . G 6 HOH A 12 312 40 HOH HOH . G 6 HOH A 13 313 122 HOH HOH . G 6 HOH A 14 314 29 HOH HOH . G 6 HOH A 15 315 26 HOH HOH . G 6 HOH A 16 316 56 HOH HOH . G 6 HOH A 17 317 16 HOH HOH . G 6 HOH A 18 318 15 HOH HOH . G 6 HOH A 19 319 259 HOH HOH . G 6 HOH A 20 320 147 HOH HOH . G 6 HOH A 21 321 219 HOH HOH . G 6 HOH A 22 322 168 HOH HOH . G 6 HOH A 23 323 143 HOH HOH . G 6 HOH A 24 324 21 HOH HOH . G 6 HOH A 25 325 27 HOH HOH . G 6 HOH A 26 326 43 HOH HOH . G 6 HOH A 27 327 203 HOH HOH . G 6 HOH A 28 328 70 HOH HOH . G 6 HOH A 29 329 88 HOH HOH . G 6 HOH A 30 330 67 HOH HOH . G 6 HOH A 31 331 24 HOH HOH . G 6 HOH A 32 332 243 HOH HOH . G 6 HOH A 33 333 13 HOH HOH . G 6 HOH A 34 334 302 HOH HOH . G 6 HOH A 35 335 36 HOH HOH . G 6 HOH A 36 336 52 HOH HOH . G 6 HOH A 37 337 7 HOH HOH . G 6 HOH A 38 338 62 HOH HOH . G 6 HOH A 39 339 123 HOH HOH . G 6 HOH A 40 340 323 HOH HOH . G 6 HOH A 41 341 141 HOH HOH . G 6 HOH A 42 342 44 HOH HOH . G 6 HOH A 43 343 263 HOH HOH . G 6 HOH A 44 344 132 HOH HOH . G 6 HOH A 45 345 249 HOH HOH . G 6 HOH A 46 346 211 HOH HOH . G 6 HOH A 47 347 319 HOH HOH . G 6 HOH A 48 348 150 HOH HOH . G 6 HOH A 49 349 32 HOH HOH . G 6 HOH A 50 350 3 HOH HOH . G 6 HOH A 51 351 222 HOH HOH . G 6 HOH A 52 352 121 HOH HOH . G 6 HOH A 53 353 174 HOH HOH . G 6 HOH A 54 354 152 HOH HOH . G 6 HOH A 55 355 208 HOH HOH . G 6 HOH A 56 356 5 HOH HOH . G 6 HOH A 57 357 18 HOH HOH . G 6 HOH A 58 358 225 HOH HOH . G 6 HOH A 59 359 131 HOH HOH . G 6 HOH A 60 360 109 HOH HOH . G 6 HOH A 61 361 119 HOH HOH . G 6 HOH A 62 362 130 HOH HOH . G 6 HOH A 63 363 76 HOH HOH . G 6 HOH A 64 364 104 HOH HOH . G 6 HOH A 65 365 261 HOH HOH . G 6 HOH A 66 366 221 HOH HOH . G 6 HOH A 67 367 205 HOH HOH . G 6 HOH A 68 368 254 HOH HOH . G 6 HOH A 69 369 14 HOH HOH . G 6 HOH A 70 370 307 HOH HOH . G 6 HOH A 71 371 82 HOH HOH . G 6 HOH A 72 372 161 HOH HOH . G 6 HOH A 73 373 285 HOH HOH . G 6 HOH A 74 374 93 HOH HOH . G 6 HOH A 75 375 120 HOH HOH . G 6 HOH A 76 376 110 HOH HOH . G 6 HOH A 77 377 51 HOH HOH . G 6 HOH A 78 378 60 HOH HOH . G 6 HOH A 79 379 48 HOH HOH . G 6 HOH A 80 380 105 HOH HOH . G 6 HOH A 81 381 10 HOH HOH . G 6 HOH A 82 382 179 HOH HOH . G 6 HOH A 83 383 115 HOH HOH . G 6 HOH A 84 384 12 HOH HOH . G 6 HOH A 85 385 86 HOH HOH . G 6 HOH A 86 386 30 HOH HOH . G 6 HOH A 87 387 209 HOH HOH . G 6 HOH A 88 388 19 HOH HOH . G 6 HOH A 89 389 216 HOH HOH . G 6 HOH A 90 390 112 HOH HOH . G 6 HOH A 91 391 210 HOH HOH . G 6 HOH A 92 392 28 HOH HOH . G 6 HOH A 93 393 215 HOH HOH . G 6 HOH A 94 394 231 HOH HOH . G 6 HOH A 95 395 46 HOH HOH . G 6 HOH A 96 396 317 HOH HOH . G 6 HOH A 97 397 252 HOH HOH . G 6 HOH A 98 398 274 HOH HOH . G 6 HOH A 99 399 220 HOH HOH . G 6 HOH A 100 400 58 HOH HOH . G 6 HOH A 101 401 157 HOH HOH . G 6 HOH A 102 402 64 HOH HOH . G 6 HOH A 103 403 175 HOH HOH . G 6 HOH A 104 404 42 HOH HOH . G 6 HOH A 105 405 22 HOH HOH . G 6 HOH A 106 406 34 HOH HOH . G 6 HOH A 107 407 250 HOH HOH . G 6 HOH A 108 408 55 HOH HOH . G 6 HOH A 109 409 129 HOH HOH . G 6 HOH A 110 410 137 HOH HOH . G 6 HOH A 111 411 124 HOH HOH . G 6 HOH A 112 412 53 HOH HOH . G 6 HOH A 113 413 87 HOH HOH . G 6 HOH A 114 414 31 HOH HOH . G 6 HOH A 115 415 148 HOH HOH . G 6 HOH A 116 416 227 HOH HOH . G 6 HOH A 117 417 74 HOH HOH . G 6 HOH A 118 418 69 HOH HOH . G 6 HOH A 119 419 33 HOH HOH . G 6 HOH A 120 420 39 HOH HOH . G 6 HOH A 121 421 166 HOH HOH . G 6 HOH A 122 422 92 HOH HOH . G 6 HOH A 123 423 50 HOH HOH . G 6 HOH A 124 424 200 HOH HOH . G 6 HOH A 125 425 153 HOH HOH . G 6 HOH A 126 426 98 HOH HOH . G 6 HOH A 127 427 106 HOH HOH . G 6 HOH A 128 428 45 HOH HOH . G 6 HOH A 129 429 234 HOH HOH . G 6 HOH A 130 430 79 HOH HOH . G 6 HOH A 131 431 278 HOH HOH . G 6 HOH A 132 432 90 HOH HOH . G 6 HOH A 133 433 309 HOH HOH . G 6 HOH A 134 434 311 HOH HOH . G 6 HOH A 135 435 73 HOH HOH . G 6 HOH A 136 436 118 HOH HOH . G 6 HOH A 137 437 125 HOH HOH . G 6 HOH A 138 438 214 HOH HOH . G 6 HOH A 139 439 145 HOH HOH . G 6 HOH A 140 440 54 HOH HOH . G 6 HOH A 141 441 320 HOH HOH . G 6 HOH A 142 442 158 HOH HOH . G 6 HOH A 143 443 260 HOH HOH . G 6 HOH A 144 444 294 HOH HOH . G 6 HOH A 145 445 156 HOH HOH . G 6 HOH A 146 446 99 HOH HOH . G 6 HOH A 147 447 178 HOH HOH . G 6 HOH A 148 448 57 HOH HOH . G 6 HOH A 149 449 290 HOH HOH . G 6 HOH A 150 450 103 HOH HOH . G 6 HOH A 151 451 107 HOH HOH . G 6 HOH A 152 452 197 HOH HOH . G 6 HOH A 153 453 242 HOH HOH . G 6 HOH A 154 454 316 HOH HOH . G 6 HOH A 155 455 71 HOH HOH . G 6 HOH A 156 456 195 HOH HOH . G 6 HOH A 157 457 81 HOH HOH . G 6 HOH A 158 458 96 HOH HOH . G 6 HOH A 159 459 85 HOH HOH . G 6 HOH A 160 460 176 HOH HOH . G 6 HOH A 161 461 142 HOH HOH . G 6 HOH A 162 462 246 HOH HOH . G 6 HOH A 163 463 322 HOH HOH . G 6 HOH A 164 464 151 HOH HOH . G 6 HOH A 165 465 80 HOH HOH . G 6 HOH A 166 466 299 HOH HOH . G 6 HOH A 167 467 321 HOH HOH . G 6 HOH A 168 468 293 HOH HOH . G 6 HOH A 169 469 100 HOH HOH . G 6 HOH A 170 470 258 HOH HOH . G 6 HOH A 171 471 196 HOH HOH . G 6 HOH A 172 472 94 HOH HOH . G 6 HOH A 173 473 127 HOH HOH . G 6 HOH A 174 474 194 HOH HOH . G 6 HOH A 175 475 135 HOH HOH . G 6 HOH A 176 476 136 HOH HOH . G 6 HOH A 177 477 239 HOH HOH . G 6 HOH A 178 478 268 HOH HOH . G 6 HOH A 179 479 77 HOH HOH . G 6 HOH A 180 480 140 HOH HOH . G 6 HOH A 181 481 206 HOH HOH . G 6 HOH A 182 482 255 HOH HOH . G 6 HOH A 183 483 91 HOH HOH . G 6 HOH A 184 484 35 HOH HOH . G 6 HOH A 185 485 256 HOH HOH . G 6 HOH A 186 486 95 HOH HOH . G 6 HOH A 187 487 101 HOH HOH . G 6 HOH A 188 488 83 HOH HOH . G 6 HOH A 189 489 192 HOH HOH . G 6 HOH A 190 490 155 HOH HOH . G 6 HOH A 191 491 84 HOH HOH . G 6 HOH A 192 492 167 HOH HOH . G 6 HOH A 193 493 138 HOH HOH . G 6 HOH A 194 494 283 HOH HOH . G 6 HOH A 195 495 183 HOH HOH . G 6 HOH A 196 496 181 HOH HOH . G 6 HOH A 197 497 265 HOH HOH . H 6 HOH D 1 201 78 HOH HOH . H 6 HOH D 2 202 72 HOH HOH . H 6 HOH D 3 203 11 HOH HOH . H 6 HOH D 4 204 47 HOH HOH . H 6 HOH D 5 205 37 HOH HOH . H 6 HOH D 6 206 97 HOH HOH . H 6 HOH D 7 207 144 HOH HOH . H 6 HOH D 8 208 133 HOH HOH . H 6 HOH D 9 209 66 HOH HOH . H 6 HOH D 10 210 113 HOH HOH . H 6 HOH D 11 211 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1AB9 . . . C 3 26.262 -10.187 15.534 1 22.63 ? N1 A1AB9 201 A 1 HETATM 2 C C4 A1AB9 . . . C 3 25.483 -9.798 16.609 1 27.89 ? C4 A1AB9 201 A 1 HETATM 3 C C5 A1AB9 . . . C 3 24.902 -8.527 16.661 1 29.15 ? C5 A1AB9 201 A 1 HETATM 4 C C6 A1AB9 . . . C 3 23.873 -8.252 17.547 1 31.39 ? C6 A1AB9 201 A 1 HETATM 5 C C8 A1AB9 . . . C 3 22.184 -10.488 19.847 1 29.93 ? C8 A1AB9 201 A 1 HETATM 6 C C10 A1AB9 . . . C 3 23.963 -10.556 18.301 1 29.12 ? C10 A1AB9 201 A 1 HETATM 7 C C2 A1AB9 . . . C 3 28.331 -10.643 13.619 1 21.05 ? C2 A1AB9 201 A 1 HETATM 8 C C3 A1AB9 . . . C 3 26.077 -9.805 14.253 1 25.06 ? C3 A1AB9 201 A 1 HETATM 9 C C9 A1AB9 . . . C 3 23.17 -11.442 19.212 1 29.43 ? C9 A1AB9 201 A 1 HETATM 10 C C11 A1AB9 . . . C 3 24.981 -10.829 17.399 1 27.7 ? C11 A1AB9 201 A 1 HETATM 11 C C12 A1AB9 . . . C 3 24.712 -8.991 12.616 1 28.02 ? C12 A1AB9 201 A 1 HETATM 12 O O A1AB9 . . . C 3 21.342 -10.757 20.69 1 35.57 ? O A1AB9 201 A 1 HETATM 13 N N2 A1AB9 . . . C 3 22.399 -9.257 19.315 1 30.44 ? N2 A1AB9 201 A 1 HETATM 14 C C7 A1AB9 . . . C 3 23.427 -9.274 18.374 1 29.86 ? C7 A1AB9 201 A 1 HETATM 15 C C1 A1AB9 . . . C 3 27.101 -9.976 13.297 1 22.52 ? C1 A1AB9 201 A 1 HETATM 16 N N A1AB9 . . . C 3 29.336 -11.146 13.822 1 22.03 ? N A1AB9 201 A 1 HETATM 17 N N3 A1AB9 . . . C 3 24.864 -9.315 13.9 1 28.45 ? N3 A1AB9 201 A 1 HETATM 18 N N4 A1AB9 . . . C 3 25.611 -9.077 11.638 1 28.29 ? N4 A1AB9 201 A 1 HETATM 19 C C A1AB9 . . . C 3 26.779 -9.573 12.007 1 25.15 ? C A1AB9 201 A 1 HETATM 20 CL CL A1AB9 . . . C 3 27.959 -9.717 10.786 0.81 26.91 ? CL A1AB9 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #