data_7GX2 # _model_server_result.job_id zlpbbCNdu2o55mhwwI12Lg _model_server_result.datetime_utc '2025-09-09 00:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GX2 # _exptl.entry_id 7GX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.689 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-6-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrimidine-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GX2 _cell.length_a 67.44 _cell.length_b 67.44 _cell.length_c 165.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.72 -58.404753 27.641667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C13 H8 Cl N5 O' _chem_comp.formula_weight 285.689 _chem_comp.id A1AB9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-6-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrimidine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C A1AB9 sing 1 n n N4 C A1AB9 doub 2 n y N4 C12 A1AB9 sing 3 n y C C1 A1AB9 sing 4 n y C12 N3 A1AB9 doub 5 n y C1 C2 A1AB9 sing 6 n n C1 C3 A1AB9 doub 7 n y C2 N A1AB9 trip 8 n n N3 C3 A1AB9 sing 9 n y C3 N1 A1AB9 sing 10 n n N1 C4 A1AB9 sing 11 n n C4 C5 A1AB9 doub 12 n y C4 C11 A1AB9 sing 13 n y C5 C6 A1AB9 sing 14 n y C11 C10 A1AB9 doub 15 n y C6 C7 A1AB9 doub 16 n y C10 C7 A1AB9 sing 17 n y C10 C9 A1AB9 sing 18 n n C7 N2 A1AB9 sing 19 n n C9 C8 A1AB9 sing 20 n n N2 C8 A1AB9 sing 21 n n C8 O A1AB9 doub 22 n n N1 H1 A1AB9 sing 23 n n C5 H2 A1AB9 sing 24 n n C6 H3 A1AB9 sing 25 n n C9 H4 A1AB9 sing 26 n n C9 H5 A1AB9 sing 27 n n C11 H6 A1AB9 sing 28 n n C12 H7 A1AB9 sing 29 n n N2 H8 A1AB9 sing 30 n n # _atom_sites.entry_id 7GX2 _atom_sites.fract_transf_matrix[1][1] 0.014828 _atom_sites.fract_transf_matrix[1][2] 0.008561 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1AB9 A 1 201 1 A1AB9 766 . D 4 CL A 1 202 1 CL CL . E 4 CL A 1 203 2 CL CL . F 5 DMS D 1 101 1 DMS DMS . G 6 HOH A 1 301 213 HOH HOH . G 6 HOH A 2 302 226 HOH HOH . G 6 HOH A 3 303 61 HOH HOH . G 6 HOH A 4 304 108 HOH HOH . G 6 HOH A 5 305 63 HOH HOH . G 6 HOH A 6 306 139 HOH HOH . G 6 HOH A 7 307 111 HOH HOH . G 6 HOH A 8 308 117 HOH HOH . G 6 HOH A 9 309 122 HOH HOH . G 6 HOH A 10 310 59 HOH HOH . G 6 HOH A 11 311 26 HOH HOH . G 6 HOH A 12 312 56 HOH HOH . G 6 HOH A 13 313 219 HOH HOH . G 6 HOH A 14 314 29 HOH HOH . G 6 HOH A 15 315 116 HOH HOH . G 6 HOH A 16 316 40 HOH HOH . G 6 HOH A 17 317 259 HOH HOH . G 6 HOH A 18 318 223 HOH HOH . G 6 HOH A 19 319 16 HOH HOH . G 6 HOH A 20 320 43 HOH HOH . G 6 HOH A 21 321 168 HOH HOH . G 6 HOH A 22 322 147 HOH HOH . G 6 HOH A 23 323 302 HOH HOH . G 6 HOH A 24 324 243 HOH HOH . G 6 HOH A 25 325 21 HOH HOH . G 6 HOH A 26 326 15 HOH HOH . G 6 HOH A 27 327 7 HOH HOH . G 6 HOH A 28 328 62 HOH HOH . G 6 HOH A 29 329 27 HOH HOH . G 6 HOH A 30 330 143 HOH HOH . G 6 HOH A 31 331 323 HOH HOH . G 6 HOH A 32 332 52 HOH HOH . G 6 HOH A 33 333 203 HOH HOH . G 6 HOH A 34 334 67 HOH HOH . G 6 HOH A 35 335 152 HOH HOH . G 6 HOH A 36 336 88 HOH HOH . G 6 HOH A 37 337 36 HOH HOH . G 6 HOH A 38 338 121 HOH HOH . G 6 HOH A 39 339 249 HOH HOH . G 6 HOH A 40 340 123 HOH HOH . G 6 HOH A 41 341 263 HOH HOH . G 6 HOH A 42 342 222 HOH HOH . G 6 HOH A 43 343 211 HOH HOH . G 6 HOH A 44 344 24 HOH HOH . G 6 HOH A 45 345 141 HOH HOH . G 6 HOH A 46 346 44 HOH HOH . G 6 HOH A 47 347 70 HOH HOH . G 6 HOH A 48 348 132 HOH HOH . G 6 HOH A 49 349 76 HOH HOH . G 6 HOH A 50 350 13 HOH HOH . G 6 HOH A 51 351 119 HOH HOH . G 6 HOH A 52 352 5 HOH HOH . G 6 HOH A 53 353 32 HOH HOH . G 6 HOH A 54 354 3 HOH HOH . G 6 HOH A 55 355 131 HOH HOH . G 6 HOH A 56 356 319 HOH HOH . G 6 HOH A 57 357 109 HOH HOH . G 6 HOH A 58 358 174 HOH HOH . G 6 HOH A 59 359 120 HOH HOH . G 6 HOH A 60 360 12 HOH HOH . G 6 HOH A 61 361 150 HOH HOH . G 6 HOH A 62 362 14 HOH HOH . G 6 HOH A 63 363 104 HOH HOH . G 6 HOH A 64 364 254 HOH HOH . G 6 HOH A 65 365 221 HOH HOH . G 6 HOH A 66 366 205 HOH HOH . G 6 HOH A 67 367 225 HOH HOH . G 6 HOH A 68 368 93 HOH HOH . G 6 HOH A 69 369 60 HOH HOH . G 6 HOH A 70 370 161 HOH HOH . G 6 HOH A 71 371 105 HOH HOH . G 6 HOH A 72 372 130 HOH HOH . G 6 HOH A 73 373 48 HOH HOH . G 6 HOH A 74 374 179 HOH HOH . G 6 HOH A 75 375 261 HOH HOH . G 6 HOH A 76 376 208 HOH HOH . G 6 HOH A 77 377 82 HOH HOH . G 6 HOH A 78 378 18 HOH HOH . G 6 HOH A 79 379 115 HOH HOH . G 6 HOH A 80 380 86 HOH HOH . G 6 HOH A 81 381 317 HOH HOH . G 6 HOH A 82 382 285 HOH HOH . G 6 HOH A 83 383 51 HOH HOH . G 6 HOH A 84 384 307 HOH HOH . G 6 HOH A 85 385 210 HOH HOH . G 6 HOH A 86 386 216 HOH HOH . G 6 HOH A 87 387 19 HOH HOH . G 6 HOH A 88 388 10 HOH HOH . G 6 HOH A 89 389 30 HOH HOH . G 6 HOH A 90 390 11 HOH HOH . G 6 HOH A 91 391 231 HOH HOH . G 6 HOH A 92 392 129 HOH HOH . G 6 HOH A 93 393 58 HOH HOH . G 6 HOH A 94 394 110 HOH HOH . G 6 HOH A 95 395 112 HOH HOH . G 6 HOH A 96 396 209 HOH HOH . G 6 HOH A 97 397 220 HOH HOH . G 6 HOH A 98 398 28 HOH HOH . G 6 HOH A 99 399 46 HOH HOH . G 6 HOH A 100 400 274 HOH HOH . G 6 HOH A 101 401 250 HOH HOH . G 6 HOH A 102 402 175 HOH HOH . G 6 HOH A 103 403 157 HOH HOH . G 6 HOH A 104 404 215 HOH HOH . G 6 HOH A 105 405 42 HOH HOH . G 6 HOH A 106 406 34 HOH HOH . G 6 HOH A 107 407 55 HOH HOH . G 6 HOH A 108 408 64 HOH HOH . G 6 HOH A 109 409 39 HOH HOH . G 6 HOH A 110 410 124 HOH HOH . G 6 HOH A 111 411 22 HOH HOH . G 6 HOH A 112 412 31 HOH HOH . G 6 HOH A 113 413 227 HOH HOH . G 6 HOH A 114 414 252 HOH HOH . G 6 HOH A 115 415 137 HOH HOH . G 6 HOH A 116 416 69 HOH HOH . G 6 HOH A 117 417 74 HOH HOH . G 6 HOH A 118 418 53 HOH HOH . G 6 HOH A 119 419 33 HOH HOH . G 6 HOH A 120 420 148 HOH HOH . G 6 HOH A 121 421 87 HOH HOH . G 6 HOH A 122 422 166 HOH HOH . G 6 HOH A 123 423 92 HOH HOH . G 6 HOH A 124 424 50 HOH HOH . G 6 HOH A 125 425 106 HOH HOH . G 6 HOH A 126 426 153 HOH HOH . G 6 HOH A 127 427 98 HOH HOH . G 6 HOH A 128 428 200 HOH HOH . G 6 HOH A 129 429 79 HOH HOH . G 6 HOH A 130 430 158 HOH HOH . G 6 HOH A 131 431 234 HOH HOH . G 6 HOH A 132 432 278 HOH HOH . G 6 HOH A 133 433 311 HOH HOH . G 6 HOH A 134 434 90 HOH HOH . G 6 HOH A 135 435 125 HOH HOH . G 6 HOH A 136 436 45 HOH HOH . G 6 HOH A 137 437 118 HOH HOH . G 6 HOH A 138 438 309 HOH HOH . G 6 HOH A 139 439 73 HOH HOH . G 6 HOH A 140 440 214 HOH HOH . G 6 HOH A 141 441 320 HOH HOH . G 6 HOH A 142 442 54 HOH HOH . G 6 HOH A 143 443 145 HOH HOH . G 6 HOH A 144 444 294 HOH HOH . G 6 HOH A 145 445 156 HOH HOH . G 6 HOH A 146 446 290 HOH HOH . G 6 HOH A 147 447 260 HOH HOH . G 6 HOH A 148 448 57 HOH HOH . G 6 HOH A 149 449 99 HOH HOH . G 6 HOH A 150 450 178 HOH HOH . G 6 HOH A 151 451 81 HOH HOH . G 6 HOH A 152 452 103 HOH HOH . G 6 HOH A 153 453 107 HOH HOH . G 6 HOH A 154 454 316 HOH HOH . G 6 HOH A 155 455 71 HOH HOH . G 6 HOH A 156 456 242 HOH HOH . G 6 HOH A 157 457 176 HOH HOH . G 6 HOH A 158 458 195 HOH HOH . G 6 HOH A 159 459 96 HOH HOH . G 6 HOH A 160 460 142 HOH HOH . G 6 HOH A 161 461 85 HOH HOH . G 6 HOH A 162 462 151 HOH HOH . G 6 HOH A 163 463 197 HOH HOH . G 6 HOH A 164 464 322 HOH HOH . G 6 HOH A 165 465 80 HOH HOH . G 6 HOH A 166 466 246 HOH HOH . G 6 HOH A 167 467 299 HOH HOH . G 6 HOH A 168 468 258 HOH HOH . G 6 HOH A 169 469 127 HOH HOH . G 6 HOH A 170 470 321 HOH HOH . G 6 HOH A 171 471 196 HOH HOH . G 6 HOH A 172 472 94 HOH HOH . G 6 HOH A 173 473 293 HOH HOH . G 6 HOH A 174 474 100 HOH HOH . G 6 HOH A 175 475 66 HOH HOH . G 6 HOH A 176 476 194 HOH HOH . G 6 HOH A 177 477 135 HOH HOH . G 6 HOH A 178 478 136 HOH HOH . G 6 HOH A 179 479 77 HOH HOH . G 6 HOH A 180 480 140 HOH HOH . G 6 HOH A 181 481 239 HOH HOH . G 6 HOH A 182 482 268 HOH HOH . G 6 HOH A 183 483 95 HOH HOH . G 6 HOH A 184 484 206 HOH HOH . G 6 HOH A 185 485 35 HOH HOH . G 6 HOH A 186 486 255 HOH HOH . G 6 HOH A 187 487 91 HOH HOH . G 6 HOH A 188 488 101 HOH HOH . G 6 HOH A 189 489 192 HOH HOH . G 6 HOH A 190 490 256 HOH HOH . G 6 HOH A 191 491 83 HOH HOH . G 6 HOH A 192 492 155 HOH HOH . G 6 HOH A 193 493 84 HOH HOH . G 6 HOH A 194 494 167 HOH HOH . G 6 HOH A 195 495 138 HOH HOH . G 6 HOH A 196 496 283 HOH HOH . G 6 HOH A 197 497 183 HOH HOH . G 6 HOH A 198 498 181 HOH HOH . G 6 HOH A 199 499 265 HOH HOH . H 6 HOH D 1 201 78 HOH HOH . H 6 HOH D 2 202 72 HOH HOH . H 6 HOH D 3 203 47 HOH HOH . H 6 HOH D 4 204 37 HOH HOH . H 6 HOH D 5 205 97 HOH HOH . H 6 HOH D 6 206 144 HOH HOH . H 6 HOH D 7 207 133 HOH HOH . H 6 HOH D 8 208 113 HOH HOH . H 6 HOH D 9 209 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1AB9 . . . C 3 26.265 -10.228 15.533 1 24.59 ? N1 A1AB9 201 A 1 HETATM 2 C C4 A1AB9 . . . C 3 25.487 -9.843 16.608 1 27.26 ? C4 A1AB9 201 A 1 HETATM 3 C C5 A1AB9 . . . C 3 24.921 -8.564 16.667 1 28.74 ? C5 A1AB9 201 A 1 HETATM 4 C C6 A1AB9 . . . C 3 23.899 -8.282 17.557 1 30.77 ? C6 A1AB9 201 A 1 HETATM 5 C C8 A1AB9 . . . C 3 22.184 -10.508 19.849 1 30.23 ? C8 A1AB9 201 A 1 HETATM 6 C C10 A1AB9 . . . C 3 23.963 -10.59 18.302 1 27.94 ? C10 A1AB9 201 A 1 HETATM 7 C C2 A1AB9 . . . C 3 28.353 -10.617 13.613 1 22.69 ? C2 A1AB9 201 A 1 HETATM 8 C C3 A1AB9 . . . C 3 26.087 -9.817 14.255 1 26.41 ? C3 A1AB9 201 A 1 HETATM 9 C C9 A1AB9 . . . C 3 23.162 -11.47 19.212 1 29.19 ? C9 A1AB9 201 A 1 HETATM 10 C C11 A1AB9 . . . C 3 24.977 -10.87 17.399 1 26.1 ? C11 A1AB9 201 A 1 HETATM 11 C C12 A1AB9 . . . C 3 24.714 -9.007 12.622 1 30.47 ? C12 A1AB9 201 A 1 HETATM 12 O O A1AB9 . . . C 3 21.336 -10.773 20.687 1 37.74 ? O A1AB9 201 A 1 HETATM 13 N N2 A1AB9 . . . C 3 22.412 -9.279 19.32 1 30.4 ? N2 A1AB9 201 A 1 HETATM 14 C C7 A1AB9 . . . C 3 23.44 -9.303 18.38 1 29.29 ? C7 A1AB9 201 A 1 HETATM 15 C C1 A1AB9 . . . C 3 27.115 -9.962 13.297 1 24.62 ? C1 A1AB9 201 A 1 HETATM 16 N N A1AB9 . . . C 3 29.362 -11.114 13.814 1 21.94 ? N A1AB9 201 A 1 HETATM 17 N N3 A1AB9 . . . C 3 24.869 -9.342 13.904 1 30.21 ? N3 A1AB9 201 A 1 HETATM 18 N N4 A1AB9 . . . C 3 25.613 -9.078 11.644 1 29.88 ? N4 A1AB9 201 A 1 HETATM 19 C C A1AB9 . . . C 3 26.787 -9.56 12.009 1 26.84 ? C A1AB9 201 A 1 HETATM 20 CL CL A1AB9 . . . C 3 27.97 -9.696 10.784 0.78 26.77 ? CL A1AB9 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #