data_7GXC # _model_server_result.job_id BIZZ2trJEq_184AEGhi0IA _model_server_result.datetime_utc '2024-12-23 05:59:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7GXC # _exptl.entry_id 7GXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.771 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7GXC _cell.length_a 67.67 _cell.length_b 67.67 _cell.length_c 166.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.835 -58.603939 27.755 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ACE 1 D ACE 0 1_555 B N TRP 2 D TRP 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C13 H11 Cl N4 O S' _chem_comp.formula_weight 306.771 _chem_comp.id A1ACB _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C2 A1ACB doub 1 n y N C1 A1ACB sing 2 n y S C1 A1ACB sing 3 n n S C A1ACB sing 4 n n C2 C3 A1ACB sing 5 n y C1 N3 A1ACB doub 6 n y C3 CL A1ACB sing 7 n n C3 C4 A1ACB doub 8 n y N3 C4 A1ACB sing 9 n y C4 N1 A1ACB sing 10 n n N1 C5 A1ACB sing 11 n n C5 C6 A1ACB doub 12 n y C5 C12 A1ACB sing 13 n y C6 C7 A1ACB sing 14 n y C12 C11 A1ACB doub 15 n y C7 C8 A1ACB doub 16 n y C11 C8 A1ACB sing 17 n y C11 C10 A1ACB sing 18 n n C8 N2 A1ACB sing 19 n n N2 C9 A1ACB sing 20 n n C10 C9 A1ACB sing 21 n n C9 O A1ACB doub 22 n n C2 H1 A1ACB sing 23 n n N1 H2 A1ACB sing 24 n n N2 H3 A1ACB sing 25 n n C6 H4 A1ACB sing 26 n n C7 H5 A1ACB sing 27 n n C10 H6 A1ACB sing 28 n n C10 H7 A1ACB sing 29 n n C12 H8 A1ACB sing 30 n n C H9 A1ACB sing 31 n n C H10 A1ACB sing 32 n n C H11 A1ACB sing 33 n n # _atom_sites.entry_id 7GXC _atom_sites.fract_transf_matrix[1][1] 0.014778 _atom_sites.fract_transf_matrix[1][2] 0.008532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACB A 1 201 1 A1ACB 767 . D 4 CL A 1 202 1 CL CL . E 4 CL A 1 203 2 CL CL . F 5 DMS D 1 101 1 DMS DMS . G 6 HOH A 1 301 31 HOH HOH . G 6 HOH A 2 302 170 HOH HOH . G 6 HOH A 3 303 151 HOH HOH . G 6 HOH A 4 304 74 HOH HOH . G 6 HOH A 5 305 36 HOH HOH . G 6 HOH A 6 306 8 HOH HOH . G 6 HOH A 7 307 20 HOH HOH . G 6 HOH A 8 308 39 HOH HOH . G 6 HOH A 9 309 30 HOH HOH . G 6 HOH A 10 310 188 HOH HOH . G 6 HOH A 11 311 111 HOH HOH . G 6 HOH A 12 312 125 HOH HOH . G 6 HOH A 13 313 81 HOH HOH . G 6 HOH A 14 314 160 HOH HOH . G 6 HOH A 15 315 139 HOH HOH . G 6 HOH A 16 316 204 HOH HOH . G 6 HOH A 17 317 21 HOH HOH . G 6 HOH A 18 318 167 HOH HOH . G 6 HOH A 19 319 103 HOH HOH . G 6 HOH A 20 320 156 HOH HOH . G 6 HOH A 21 321 133 HOH HOH . G 6 HOH A 22 322 144 HOH HOH . G 6 HOH A 23 323 148 HOH HOH . G 6 HOH A 24 324 83 HOH HOH . G 6 HOH A 25 325 58 HOH HOH . G 6 HOH A 26 326 72 HOH HOH . G 6 HOH A 27 327 7 HOH HOH . G 6 HOH A 28 328 106 HOH HOH . G 6 HOH A 29 329 50 HOH HOH . G 6 HOH A 30 330 79 HOH HOH . G 6 HOH A 31 331 60 HOH HOH . G 6 HOH A 32 332 98 HOH HOH . G 6 HOH A 33 333 45 HOH HOH . G 6 HOH A 34 334 147 HOH HOH . G 6 HOH A 35 335 77 HOH HOH . G 6 HOH A 36 336 17 HOH HOH . G 6 HOH A 37 337 13 HOH HOH . G 6 HOH A 38 338 14 HOH HOH . G 6 HOH A 39 339 116 HOH HOH . G 6 HOH A 40 340 112 HOH HOH . G 6 HOH A 41 341 191 HOH HOH . G 6 HOH A 42 342 87 HOH HOH . G 6 HOH A 43 343 9 HOH HOH . G 6 HOH A 44 344 4 HOH HOH . G 6 HOH A 45 345 164 HOH HOH . G 6 HOH A 46 346 195 HOH HOH . G 6 HOH A 47 347 73 HOH HOH . G 6 HOH A 48 348 107 HOH HOH . G 6 HOH A 49 349 149 HOH HOH . G 6 HOH A 50 350 18 HOH HOH . G 6 HOH A 51 351 108 HOH HOH . G 6 HOH A 52 352 120 HOH HOH . G 6 HOH A 53 353 82 HOH HOH . G 6 HOH A 54 354 92 HOH HOH . G 6 HOH A 55 355 78 HOH HOH . G 6 HOH A 56 356 71 HOH HOH . G 6 HOH A 57 357 75 HOH HOH . G 6 HOH A 58 358 25 HOH HOH . G 6 HOH A 59 359 80 HOH HOH . G 6 HOH A 60 360 158 HOH HOH . G 6 HOH A 61 361 84 HOH HOH . G 6 HOH A 62 362 198 HOH HOH . G 6 HOH A 63 363 76 HOH HOH . G 6 HOH A 64 364 65 HOH HOH . G 6 HOH A 65 365 26 HOH HOH . G 6 HOH A 66 366 15 HOH HOH . G 6 HOH A 67 367 24 HOH HOH . G 6 HOH A 68 368 150 HOH HOH . G 6 HOH A 69 369 187 HOH HOH . G 6 HOH A 70 370 62 HOH HOH . G 6 HOH A 71 371 177 HOH HOH . G 6 HOH A 72 372 145 HOH HOH . G 6 HOH A 73 373 146 HOH HOH . G 6 HOH A 74 374 131 HOH HOH . G 6 HOH A 75 375 85 HOH HOH . G 6 HOH A 76 376 68 HOH HOH . G 6 HOH A 77 377 199 HOH HOH . G 6 HOH A 78 378 93 HOH HOH . G 6 HOH A 79 379 113 HOH HOH . G 6 HOH A 80 380 182 HOH HOH . G 6 HOH A 81 381 136 HOH HOH . G 6 HOH A 82 382 34 HOH HOH . G 6 HOH A 83 383 28 HOH HOH . G 6 HOH A 84 384 48 HOH HOH . G 6 HOH A 85 385 88 HOH HOH . G 6 HOH A 86 386 165 HOH HOH . G 6 HOH A 87 387 135 HOH HOH . G 6 HOH A 88 388 123 HOH HOH . G 6 HOH A 89 389 163 HOH HOH . G 6 HOH A 90 390 95 HOH HOH . G 6 HOH A 91 391 91 HOH HOH . G 6 HOH A 92 392 23 HOH HOH . G 6 HOH A 93 393 90 HOH HOH . G 6 HOH A 94 394 32 HOH HOH . G 6 HOH A 95 395 54 HOH HOH . G 6 HOH A 96 396 159 HOH HOH . G 6 HOH A 97 397 53 HOH HOH . G 6 HOH A 98 398 172 HOH HOH . G 6 HOH A 99 399 19 HOH HOH . G 6 HOH A 100 400 56 HOH HOH . G 6 HOH A 101 401 66 HOH HOH . G 6 HOH A 102 402 169 HOH HOH . G 6 HOH A 103 403 176 HOH HOH . G 6 HOH A 104 404 184 HOH HOH . G 6 HOH A 105 405 38 HOH HOH . G 6 HOH A 106 406 192 HOH HOH . G 6 HOH A 107 407 175 HOH HOH . G 6 HOH A 108 408 40 HOH HOH . G 6 HOH A 109 409 124 HOH HOH . G 6 HOH A 110 410 194 HOH HOH . G 6 HOH A 111 411 109 HOH HOH . G 6 HOH A 112 412 69 HOH HOH . G 6 HOH A 113 413 141 HOH HOH . G 6 HOH A 114 414 179 HOH HOH . G 6 HOH A 115 415 134 HOH HOH . G 6 HOH A 116 416 193 HOH HOH . G 6 HOH A 117 417 157 HOH HOH . G 6 HOH A 118 418 202 HOH HOH . G 6 HOH A 119 419 94 HOH HOH . G 6 HOH A 120 420 208 HOH HOH . G 6 HOH A 121 421 173 HOH HOH . G 6 HOH A 122 422 174 HOH HOH . G 6 HOH A 123 423 57 HOH HOH . G 6 HOH A 124 424 35 HOH HOH . G 6 HOH A 125 425 63 HOH HOH . G 6 HOH A 126 426 33 HOH HOH . G 6 HOH A 127 427 196 HOH HOH . G 6 HOH A 128 428 189 HOH HOH . G 6 HOH A 129 429 51 HOH HOH . G 6 HOH A 130 430 121 HOH HOH . G 6 HOH A 131 431 197 HOH HOH . G 6 HOH A 132 432 200 HOH HOH . G 6 HOH A 133 433 42 HOH HOH . G 6 HOH A 134 434 118 HOH HOH . G 6 HOH A 135 435 209 HOH HOH . G 6 HOH A 136 436 117 HOH HOH . G 6 HOH A 137 437 41 HOH HOH . G 6 HOH A 138 438 100 HOH HOH . G 6 HOH A 139 439 203 HOH HOH . G 6 HOH A 140 440 97 HOH HOH . G 6 HOH A 141 441 43 HOH HOH . G 6 HOH A 142 442 49 HOH HOH . G 6 HOH A 143 443 67 HOH HOH . G 6 HOH A 144 444 201 HOH HOH . G 6 HOH A 145 445 140 HOH HOH . G 6 HOH A 146 446 155 HOH HOH . G 6 HOH A 147 447 122 HOH HOH . G 6 HOH A 148 448 206 HOH HOH . G 6 HOH A 149 449 47 HOH HOH . G 6 HOH A 150 450 52 HOH HOH . G 6 HOH A 151 451 154 HOH HOH . G 6 HOH A 152 452 205 HOH HOH . G 6 HOH A 153 453 180 HOH HOH . G 6 HOH A 154 454 104 HOH HOH . G 6 HOH A 155 455 207 HOH HOH . G 6 HOH A 156 456 142 HOH HOH . G 6 HOH A 157 457 186 HOH HOH . G 6 HOH A 158 458 168 HOH HOH . H 6 HOH D 1 201 46 HOH HOH . H 6 HOH D 2 202 22 HOH HOH . H 6 HOH D 3 203 61 HOH HOH . H 6 HOH D 4 204 55 HOH HOH . H 6 HOH D 5 205 152 HOH HOH . H 6 HOH D 6 206 27 HOH HOH . H 6 HOH D 7 207 211 HOH HOH . H 6 HOH D 8 208 37 HOH HOH . H 6 HOH D 9 209 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1ACB . . . C 3 27.404 -10.401 11.976 1 24.91 ? C2 A1ACB 201 A 1 HETATM 2 N N1 A1ACB . . . C 3 26.377 -10.597 15.514 1 22.63 ? N1 A1ACB 201 A 1 HETATM 3 C C1 A1ACB . . . C 3 25.45 -9.23 12.379 1 28.55 ? C1 A1ACB 201 A 1 HETATM 4 C C3 A1ACB . . . C 3 27.483 -10.698 13.334 1 21.24 ? C3 A1ACB 201 A 1 HETATM 5 C C4 A1ACB . . . C 3 26.461 -10.216 14.215 1 23.14 ? C4 A1ACB 201 A 1 HETATM 6 C C5 A1ACB . . . C 3 25.444 -10.165 16.496 1 22.89 ? C5 A1ACB 201 A 1 HETATM 7 N N2 A1ACB . . . C 3 22.254 -9.636 19.193 1 25.59 ? N2 A1ACB 201 A 1 HETATM 8 C C6 A1ACB . . . C 3 24.808 -8.901 16.537 1 21.79 ? C6 A1ACB 201 A 1 HETATM 9 N N3 A1ACB . . . C 3 25.426 -9.492 13.697 1 25.32 ? N3 A1ACB 201 A 1 HETATM 10 C C7 A1ACB . . . C 3 23.77 -8.622 17.435 1 25.77 ? C7 A1ACB 201 A 1 HETATM 11 C C8 A1ACB . . . C 3 23.324 -9.656 18.271 1 25.97 ? C8 A1ACB 201 A 1 HETATM 12 C C9 A1ACB . . . C 3 22.126 -10.903 19.81 1 29.28 ? C9 A1ACB 201 A 1 HETATM 13 O O A1ACB . . . C 3 21.243 -11.163 20.615 1 28.2 ? O A1ACB 201 A 1 HETATM 14 C C10 A1ACB . . . C 3 23.228 -11.827 19.251 1 27 ? C10 A1ACB 201 A 1 HETATM 15 C C11 A1ACB . . . C 3 23.916 -10.957 18.234 1 24.32 ? C11 A1ACB 201 A 1 HETATM 16 C C12 A1ACB . . . C 3 24.956 -11.242 17.351 1 21.23 ? C12 A1ACB 201 A 1 HETATM 17 CL CL A1ACB . . . C 3 28.777 -11.553 13.901 0.85 20.98 ? CL A1ACB 201 A 1 HETATM 18 N N A1ACB . . . C 3 26.382 -9.656 11.473 1 26.06 ? N A1ACB 201 A 1 HETATM 19 S S A1ACB . . . C 3 24.176 -8.219 11.713 1 36.04 ? S A1ACB 201 A 1 HETATM 20 C C A1ACB . . . C 3 23.103 -7.763 13.09 1 38.46 ? C A1ACB 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #