data_7H1I # _model_server_result.job_id BWrCEAEkxNSyCXkyhEG1UA _model_server_result.datetime_utc '2024-10-11 05:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7H1I # _exptl.entry_id 7H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.23 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(propan-2-yl)-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7H1I _cell.length_a 42.574 _cell.length_b 42.574 _cell.length_c 216.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N3' _chem_comp.formula_weight 175.23 _chem_comp.id VWJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(propan-2-yl)-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 VWJ doub 385 n y C7 C6 VWJ sing 386 n y C3 C2 VWJ sing 387 n n C8 C9 VWJ sing 388 n y C6 C5 VWJ doub 389 n y C9 C10 VWJ doub 390 n y C5 C10 VWJ sing 391 n y C5 N2 VWJ sing 392 n y C10 N3 VWJ sing 393 n y N2 C4 VWJ doub 394 n y N3 C4 VWJ sing 395 n y C2 N1 VWJ sing 396 n n C2 C1 VWJ sing 397 n n C4 N1 VWJ sing 398 n n N1 H1 VWJ sing 399 n n N3 H2 VWJ sing 400 n n C6 H3 VWJ sing 401 n n C7 H4 VWJ sing 402 n n C8 H5 VWJ sing 403 n n C1 H6 VWJ sing 404 n n C1 H7 VWJ sing 405 n n C1 H8 VWJ sing 406 n n C2 H9 VWJ sing 407 n n C3 H10 VWJ sing 408 n n C3 H11 VWJ sing 409 n n C3 H12 VWJ sing 410 n n C9 H14 VWJ sing 411 n n # _atom_sites.entry_id 7H1I _atom_sites.fract_transf_matrix[1][1] 0.023489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS B 1 201 202 DMS DMS . D 3 DMS B 1 202 203 DMS DMS . E 4 VWJ B 1 203 301 VWJ LIG . F 5 HOH A 1 101 34 HOH HOH . F 5 HOH A 2 102 131 HOH HOH . F 5 HOH A 3 103 129 HOH HOH . F 5 HOH A 4 104 76 HOH HOH . F 5 HOH A 5 105 66 HOH HOH . F 5 HOH A 6 106 63 HOH HOH . F 5 HOH A 7 107 48 HOH HOH . F 5 HOH A 8 108 130 HOH HOH . F 5 HOH A 9 109 26 HOH HOH . F 5 HOH A 10 110 108 HOH HOH . F 5 HOH A 11 111 21 HOH HOH . F 5 HOH A 12 112 38 HOH HOH . F 5 HOH A 13 113 12 HOH HOH . F 5 HOH A 14 114 35 HOH HOH . F 5 HOH A 15 115 15 HOH HOH . F 5 HOH A 16 116 79 HOH HOH . F 5 HOH A 17 117 28 HOH HOH . F 5 HOH A 18 118 71 HOH HOH . F 5 HOH A 19 119 78 HOH HOH . F 5 HOH A 20 120 22 HOH HOH . F 5 HOH A 21 121 126 HOH HOH . F 5 HOH A 22 122 87 HOH HOH . F 5 HOH A 23 123 36 HOH HOH . F 5 HOH A 24 124 128 HOH HOH . F 5 HOH A 25 125 77 HOH HOH . F 5 HOH A 26 126 67 HOH HOH . F 5 HOH A 27 127 123 HOH HOH . F 5 HOH A 28 128 122 HOH HOH . F 5 HOH A 29 129 107 HOH HOH . F 5 HOH A 30 130 20 HOH HOH . F 5 HOH A 31 131 85 HOH HOH . G 5 HOH B 1 301 97 HOH HOH . G 5 HOH B 2 302 119 HOH HOH . G 5 HOH B 3 303 37 HOH HOH . G 5 HOH B 4 304 92 HOH HOH . G 5 HOH B 5 305 8 HOH HOH . G 5 HOH B 6 306 94 HOH HOH . G 5 HOH B 7 307 96 HOH HOH . G 5 HOH B 8 308 101 HOH HOH . G 5 HOH B 9 309 61 HOH HOH . G 5 HOH B 10 310 102 HOH HOH . G 5 HOH B 11 311 29 HOH HOH . G 5 HOH B 12 312 18 HOH HOH . G 5 HOH B 13 313 33 HOH HOH . G 5 HOH B 14 314 121 HOH HOH . G 5 HOH B 15 315 6 HOH HOH . G 5 HOH B 16 316 46 HOH HOH . G 5 HOH B 17 317 50 HOH HOH . G 5 HOH B 18 318 41 HOH HOH . G 5 HOH B 19 319 117 HOH HOH . G 5 HOH B 20 320 51 HOH HOH . G 5 HOH B 21 321 69 HOH HOH . G 5 HOH B 22 322 64 HOH HOH . G 5 HOH B 23 323 58 HOH HOH . G 5 HOH B 24 324 11 HOH HOH . G 5 HOH B 25 325 4 HOH HOH . G 5 HOH B 26 326 141 HOH HOH . G 5 HOH B 27 327 137 HOH HOH . G 5 HOH B 28 328 139 HOH HOH . G 5 HOH B 29 329 91 HOH HOH . G 5 HOH B 30 330 1 HOH HOH . G 5 HOH B 31 331 98 HOH HOH . G 5 HOH B 32 332 39 HOH HOH . G 5 HOH B 33 333 24 HOH HOH . G 5 HOH B 34 334 75 HOH HOH . G 5 HOH B 35 335 90 HOH HOH . G 5 HOH B 36 336 84 HOH HOH . G 5 HOH B 37 337 2 HOH HOH . G 5 HOH B 38 338 89 HOH HOH . G 5 HOH B 39 339 105 HOH HOH . G 5 HOH B 40 340 5 HOH HOH . G 5 HOH B 41 341 124 HOH HOH . G 5 HOH B 42 342 138 HOH HOH . G 5 HOH B 43 343 132 HOH HOH . G 5 HOH B 44 344 57 HOH HOH . G 5 HOH B 45 345 95 HOH HOH . G 5 HOH B 46 346 112 HOH HOH . G 5 HOH B 47 347 25 HOH HOH . G 5 HOH B 48 348 7 HOH HOH . G 5 HOH B 49 349 23 HOH HOH . G 5 HOH B 50 350 104 HOH HOH . G 5 HOH B 51 351 73 HOH HOH . G 5 HOH B 52 352 10 HOH HOH . G 5 HOH B 53 353 16 HOH HOH . G 5 HOH B 54 354 9 HOH HOH . G 5 HOH B 55 355 110 HOH HOH . G 5 HOH B 56 356 120 HOH HOH . G 5 HOH B 57 357 30 HOH HOH . G 5 HOH B 58 358 49 HOH HOH . G 5 HOH B 59 359 116 HOH HOH . G 5 HOH B 60 360 53 HOH HOH . G 5 HOH B 61 361 54 HOH HOH . G 5 HOH B 62 362 27 HOH HOH . G 5 HOH B 63 363 125 HOH HOH . G 5 HOH B 64 364 45 HOH HOH . G 5 HOH B 65 365 127 HOH HOH . G 5 HOH B 66 366 17 HOH HOH . G 5 HOH B 67 367 43 HOH HOH . G 5 HOH B 68 368 118 HOH HOH . G 5 HOH B 69 369 82 HOH HOH . G 5 HOH B 70 370 14 HOH HOH . G 5 HOH B 71 371 134 HOH HOH . G 5 HOH B 72 372 3 HOH HOH . G 5 HOH B 73 373 99 HOH HOH . G 5 HOH B 74 374 74 HOH HOH . G 5 HOH B 75 375 68 HOH HOH . G 5 HOH B 76 376 115 HOH HOH . G 5 HOH B 77 377 62 HOH HOH . G 5 HOH B 78 378 13 HOH HOH . G 5 HOH B 79 379 59 HOH HOH . G 5 HOH B 80 380 80 HOH HOH . G 5 HOH B 81 381 113 HOH HOH . G 5 HOH B 82 382 111 HOH HOH . G 5 HOH B 83 383 47 HOH HOH . G 5 HOH B 84 384 106 HOH HOH . G 5 HOH B 85 385 65 HOH HOH . G 5 HOH B 86 386 109 HOH HOH . G 5 HOH B 87 387 56 HOH HOH . G 5 HOH B 88 388 31 HOH HOH . G 5 HOH B 89 389 133 HOH HOH . G 5 HOH B 90 390 44 HOH HOH . G 5 HOH B 91 391 114 HOH HOH . G 5 HOH B 92 392 93 HOH HOH . G 5 HOH B 93 393 100 HOH HOH . G 5 HOH B 94 394 19 HOH HOH . G 5 HOH B 95 395 103 HOH HOH . G 5 HOH B 96 396 32 HOH HOH . G 5 HOH B 97 397 72 HOH HOH . G 5 HOH B 98 398 136 HOH HOH . G 5 HOH B 99 399 81 HOH HOH . G 5 HOH B 100 400 83 HOH HOH . G 5 HOH B 101 401 60 HOH HOH . G 5 HOH B 102 402 42 HOH HOH . G 5 HOH B 103 403 88 HOH HOH . G 5 HOH B 104 404 55 HOH HOH . G 5 HOH B 105 405 70 HOH HOH . G 5 HOH B 106 406 40 HOH HOH . G 5 HOH B 107 407 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VWJ . . . E 4 -4.833 5.464 -19.795 0.84 55.95 ? N1 VWJ 203 B 1 HETATM 2 N N3 VWJ . . . E 4 -6.098 5.257 -17.81 0.84 51.73 ? N3 VWJ 203 B 1 HETATM 3 C C4 VWJ . . . E 4 -6.01 5.287 -19.13 0.84 53.09 ? C4 VWJ 203 B 1 HETATM 4 C C5 VWJ . . . E 4 -8.136 4.856 -18.744 0.84 50.07 ? C5 VWJ 203 B 1 HETATM 5 C C6 VWJ . . . E 4 -9.482 4.518 -18.774 0.84 49.08 ? C6 VWJ 203 B 1 HETATM 6 C C7 VWJ . . . E 4 -10.126 4.302 -17.561 0.84 48.69 ? C7 VWJ 203 B 1 HETATM 7 C C8 VWJ . . . E 4 -9.446 4.444 -16.359 0.84 48.68 ? C8 VWJ 203 B 1 HETATM 8 C C10 VWJ . . . E 4 -7.44 4.986 -17.545 0.84 50.32 ? C10 VWJ 203 B 1 HETATM 9 C C1 VWJ . . . E 4 -2.576 4.542 -19.68 0.84 58.89 ? C1 VWJ 203 B 1 HETATM 10 C C2 VWJ . . . E 4 -3.533 5.579 -19.127 0.84 58.09 ? C2 VWJ 203 B 1 HETATM 11 C C3 VWJ . . . E 4 -3.001 6.984 -19.306 0.84 58.91 ? C3 VWJ 203 B 1 HETATM 12 N N2 VWJ . . . E 4 -7.194 5.067 -19.75 0.84 51.24 ? N2 VWJ 203 B 1 HETATM 13 C C9 VWJ . . . E 4 -8.104 4.79 -16.334 0.84 49.63 ? C9 VWJ 203 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #