data_7H2N # _model_server_result.job_id cZDXeqSRDqvTSPKtkWSw1g _model_server_result.datetime_utc '2024-12-23 11:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7H2N # _exptl.entry_id 7H2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.234 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methoxy-2-(piperazin-1-yl)pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7H2N _cell.length_a 42.576 _cell.length_b 42.576 _cell.length_c 216.907 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N4 O' _chem_comp.formula_weight 194.234 _chem_comp.id A1AJ9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-methoxy-2-(piperazin-1-yl)pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C A1AJ9 sing 1 n n C1 O A1AJ9 sing 2 n n C1 C2 A1AJ9 doub 3 n y C2 C3 A1AJ9 sing 4 n y C3 N A1AJ9 doub 5 n y N C4 A1AJ9 sing 6 n y C4 N1 A1AJ9 doub 7 n y N1 C1 A1AJ9 sing 8 n y N2 C4 A1AJ9 sing 9 n n N2 C5 A1AJ9 sing 10 n n C5 C6 A1AJ9 sing 11 n n C6 N3 A1AJ9 sing 12 n n N3 C7 A1AJ9 sing 13 n n C7 C8 A1AJ9 sing 14 n n C8 N2 A1AJ9 sing 15 n n N3 H14 A1AJ9 sing 16 n n C5 H6 A1AJ9 sing 17 n n C5 H5 A1AJ9 sing 18 n n C6 H8 A1AJ9 sing 19 n n C6 H7 A1AJ9 sing 20 n n C7 H10 A1AJ9 sing 21 n n C7 H11 A1AJ9 sing 22 n n C8 H12 A1AJ9 sing 23 n n C8 H13 A1AJ9 sing 24 n n C H2 A1AJ9 sing 25 n n C H1 A1AJ9 sing 26 n n C H A1AJ9 sing 27 n n C3 H4 A1AJ9 sing 28 n n C2 H3 A1AJ9 sing 29 n n # _atom_sites.entry_id 7H2N _atom_sites.fract_transf_matrix[1][1] 0.023487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS B 1 201 202 DMS DMS . D 4 A1AJ9 B 1 202 301 A1AJ9 LIG . E 5 HOH A 1 101 74 HOH HOH . E 5 HOH A 2 102 110 HOH HOH . E 5 HOH A 3 103 71 HOH HOH . E 5 HOH A 4 104 26 HOH HOH . E 5 HOH A 5 105 80 HOH HOH . E 5 HOH A 6 106 59 HOH HOH . E 5 HOH A 7 107 45 HOH HOH . E 5 HOH A 8 108 12 HOH HOH . E 5 HOH A 9 109 86 HOH HOH . E 5 HOH A 10 110 81 HOH HOH . E 5 HOH A 11 111 106 HOH HOH . E 5 HOH A 12 112 21 HOH HOH . E 5 HOH A 13 113 34 HOH HOH . E 5 HOH A 14 114 28 HOH HOH . E 5 HOH A 15 115 63 HOH HOH . E 5 HOH A 16 116 73 HOH HOH . E 5 HOH A 17 117 114 HOH HOH . E 5 HOH A 18 118 35 HOH HOH . E 5 HOH A 19 119 107 HOH HOH . E 5 HOH A 20 120 103 HOH HOH . E 5 HOH A 21 121 98 HOH HOH . E 5 HOH A 22 122 105 HOH HOH . E 5 HOH A 23 123 78 HOH HOH . E 5 HOH A 24 124 119 HOH HOH . E 5 HOH A 25 125 51 HOH HOH . E 5 HOH A 26 126 22 HOH HOH . E 5 HOH A 27 127 93 HOH HOH . E 5 HOH A 28 128 100 HOH HOH . E 5 HOH A 29 129 72 HOH HOH . E 5 HOH A 30 130 102 HOH HOH . E 5 HOH A 31 131 91 HOH HOH . E 5 HOH A 32 132 20 HOH HOH . E 5 HOH A 33 133 54 HOH HOH . F 5 HOH B 1 301 36 HOH HOH . F 5 HOH B 2 302 8 HOH HOH . F 5 HOH B 3 303 95 HOH HOH . F 5 HOH B 4 304 56 HOH HOH . F 5 HOH B 5 305 104 HOH HOH . F 5 HOH B 6 306 32 HOH HOH . F 5 HOH B 7 307 76 HOH HOH . F 5 HOH B 8 308 115 HOH HOH . F 5 HOH B 9 309 11 HOH HOH . F 5 HOH B 10 310 37 HOH HOH . F 5 HOH B 11 311 60 HOH HOH . F 5 HOH B 12 312 25 HOH HOH . F 5 HOH B 13 313 85 HOH HOH . F 5 HOH B 14 314 57 HOH HOH . F 5 HOH B 15 315 39 HOH HOH . F 5 HOH B 16 316 4 HOH HOH . F 5 HOH B 17 317 5 HOH HOH . F 5 HOH B 18 318 70 HOH HOH . F 5 HOH B 19 319 53 HOH HOH . F 5 HOH B 20 320 92 HOH HOH . F 5 HOH B 21 321 117 HOH HOH . F 5 HOH B 22 322 33 HOH HOH . F 5 HOH B 23 323 30 HOH HOH . F 5 HOH B 24 324 43 HOH HOH . F 5 HOH B 25 325 101 HOH HOH . F 5 HOH B 26 326 90 HOH HOH . F 5 HOH B 27 327 2 HOH HOH . F 5 HOH B 28 328 116 HOH HOH . F 5 HOH B 29 329 84 HOH HOH . F 5 HOH B 30 330 97 HOH HOH . F 5 HOH B 31 331 24 HOH HOH . F 5 HOH B 32 332 109 HOH HOH . F 5 HOH B 33 333 1 HOH HOH . F 5 HOH B 34 334 108 HOH HOH . F 5 HOH B 35 335 7 HOH HOH . F 5 HOH B 36 336 6 HOH HOH . F 5 HOH B 37 337 118 HOH HOH . F 5 HOH B 38 338 10 HOH HOH . F 5 HOH B 39 339 23 HOH HOH . F 5 HOH B 40 340 15 HOH HOH . F 5 HOH B 41 341 49 HOH HOH . F 5 HOH B 42 342 47 HOH HOH . F 5 HOH B 43 343 27 HOH HOH . F 5 HOH B 44 344 29 HOH HOH . F 5 HOH B 45 345 69 HOH HOH . F 5 HOH B 46 346 58 HOH HOH . F 5 HOH B 47 347 38 HOH HOH . F 5 HOH B 48 348 46 HOH HOH . F 5 HOH B 49 349 14 HOH HOH . F 5 HOH B 50 350 48 HOH HOH . F 5 HOH B 51 351 62 HOH HOH . F 5 HOH B 52 352 112 HOH HOH . F 5 HOH B 53 353 121 HOH HOH . F 5 HOH B 54 354 9 HOH HOH . F 5 HOH B 55 355 75 HOH HOH . F 5 HOH B 56 356 42 HOH HOH . F 5 HOH B 57 357 79 HOH HOH . F 5 HOH B 58 358 18 HOH HOH . F 5 HOH B 59 359 16 HOH HOH . F 5 HOH B 60 360 17 HOH HOH . F 5 HOH B 61 361 52 HOH HOH . F 5 HOH B 62 362 3 HOH HOH . F 5 HOH B 63 363 64 HOH HOH . F 5 HOH B 64 364 125 HOH HOH . F 5 HOH B 65 365 111 HOH HOH . F 5 HOH B 66 366 96 HOH HOH . F 5 HOH B 67 367 31 HOH HOH . F 5 HOH B 68 368 44 HOH HOH . F 5 HOH B 69 369 87 HOH HOH . F 5 HOH B 70 370 13 HOH HOH . F 5 HOH B 71 371 83 HOH HOH . F 5 HOH B 72 372 66 HOH HOH . F 5 HOH B 73 373 94 HOH HOH . F 5 HOH B 74 374 99 HOH HOH . F 5 HOH B 75 375 77 HOH HOH . F 5 HOH B 76 376 113 HOH HOH . F 5 HOH B 77 377 82 HOH HOH . F 5 HOH B 78 378 68 HOH HOH . F 5 HOH B 79 379 65 HOH HOH . F 5 HOH B 80 380 55 HOH HOH . F 5 HOH B 81 381 61 HOH HOH . F 5 HOH B 82 382 120 HOH HOH . F 5 HOH B 83 383 19 HOH HOH . F 5 HOH B 84 384 123 HOH HOH . F 5 HOH B 85 385 41 HOH HOH . F 5 HOH B 86 386 89 HOH HOH . F 5 HOH B 87 387 124 HOH HOH . F 5 HOH B 88 388 88 HOH HOH . F 5 HOH B 89 389 40 HOH HOH . F 5 HOH B 90 390 122 HOH HOH . F 5 HOH B 91 391 67 HOH HOH . F 5 HOH B 92 392 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1AJ9 . . . D 4 -8.141 4.607 -17.859 0.7 56.4 ? N1 A1AJ9 202 B 1 HETATM 2 N N3 A1AJ9 . . . D 4 -4.559 7.283 -19.331 0.7 57.81 ? N3 A1AJ9 202 B 1 HETATM 3 C C4 A1AJ9 . . . D 4 -7.007 5.086 -17.328 0.7 56.96 ? C4 A1AJ9 202 B 1 HETATM 4 C C5 A1AJ9 . . . D 4 -4.574 5.282 -17.815 0.7 57.44 ? C5 A1AJ9 202 B 1 HETATM 5 C C6 A1AJ9 . . . D 4 -3.763 6.43 -18.398 0.7 57.72 ? C6 A1AJ9 202 B 1 HETATM 6 C C7 A1AJ9 . . . D 4 -5.331 6.479 -20.318 0.7 57.74 ? C7 A1AJ9 202 B 1 HETATM 7 C C8 A1AJ9 . . . D 4 -6.163 5.388 -19.651 0.7 57.46 ? C8 A1AJ9 202 B 1 HETATM 8 C C A1AJ9 . . . D 4 -10.841 4.418 -18.612 0.7 56.69 ? C A1AJ9 202 B 1 HETATM 9 O O A1AJ9 . . . D 4 -10.252 3.77 -17.484 0.7 56.88 ? O A1AJ9 202 B 1 HETATM 10 C C1 A1AJ9 . . . D 4 -9.097 4.27 -17.008 0.7 56.86 ? C1 A1AJ9 202 B 1 HETATM 11 N N A1AJ9 . . . D 4 -6.77 5.258 -16.019 0.7 57.38 ? N A1AJ9 202 B 1 HETATM 12 C C3 A1AJ9 . . . D 4 -7.771 4.893 -15.2 0.7 57.51 ? C3 A1AJ9 202 B 1 HETATM 13 C C2 A1AJ9 . . . D 4 -8.982 4.381 -15.624 0.7 57.14 ? C2 A1AJ9 202 B 1 HETATM 14 N N2 A1AJ9 . . . D 4 -5.99 5.387 -18.192 0.7 57.36 ? N2 A1AJ9 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #