data_7H32 # _model_server_result.job_id O1KXp-765IGAwyVyvrdwPw _model_server_result.datetime_utc '2024-11-05 04:46:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7H32 # _exptl.entry_id 7H32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.268 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description N-[(3R)-piperidin-3-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.7 _cell.angle_gamma 90 _cell.entry_id 7H32 _cell.length_a 87.053 _cell.length_b 57.689 _cell.length_c 32.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'C12 H16 N2 O' _chem_comp.formula_weight 204.268 _chem_comp.id 89W _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R)-piperidin-3-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 89W sing 1 n n C07 N08 89W sing 2 n n C06 C05 89W sing 3 n n N08 C09 89W sing 4 n n C05 C04 89W sing 5 n n C09 C04 89W sing 6 n n C04 N03 89W sing 7 n n N03 C02 89W sing 8 n n O01 C02 89W doub 9 n n C02 C10 89W sing 10 n n C10 C15 89W doub 11 n y C10 C11 89W sing 12 n y C15 C14 89W sing 13 n y C11 C12 89W doub 14 n y C14 C13 89W doub 15 n y C12 C13 89W sing 16 n y C13 H1 89W sing 17 n n C15 H2 89W sing 18 n n N03 H3 89W sing 19 n n C04 H4 89W sing 20 n n C05 H5 89W sing 21 n n C05 H6 89W sing 22 n n C06 H7 89W sing 23 n n C06 H8 89W sing 24 n n C07 H9 89W sing 25 n n C07 H10 89W sing 26 n n N08 H11 89W sing 27 n n C09 H13 89W sing 28 n n C09 H14 89W sing 29 n n C11 H15 89W sing 30 n n C12 H16 89W sing 31 n n C14 H17 89W sing 32 n n # _atom_sites.entry_id 7H32 _atom_sites.fract_transf_matrix[1][1] 0.011487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 89W A 1 201 147 89W LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 0 DMS DMS . E 4 DMS A 1 204 3 DMS DMS . F 4 DMS A 1 205 6 DMS DMS . G 5 SO4 A 1 206 1 SO4 SO4 . H 6 HOH A 1 301 131 HOH HOH . H 6 HOH A 2 302 66 HOH HOH . H 6 HOH A 3 303 137 HOH HOH . H 6 HOH A 4 304 212 HOH HOH . H 6 HOH A 5 305 142 HOH HOH . H 6 HOH A 6 306 245 HOH HOH . H 6 HOH A 7 307 45 HOH HOH . H 6 HOH A 8 308 94 HOH HOH . H 6 HOH A 9 309 30 HOH HOH . H 6 HOH A 10 310 72 HOH HOH . H 6 HOH A 11 311 107 HOH HOH . H 6 HOH A 12 312 121 HOH HOH . H 6 HOH A 13 313 4 HOH HOH . H 6 HOH A 14 314 147 HOH HOH . H 6 HOH A 15 315 81 HOH HOH . H 6 HOH A 16 316 34 HOH HOH . H 6 HOH A 17 317 42 HOH HOH . H 6 HOH A 18 318 120 HOH HOH . H 6 HOH A 19 319 161 HOH HOH . H 6 HOH A 20 320 146 HOH HOH . H 6 HOH A 21 321 68 HOH HOH . H 6 HOH A 22 322 178 HOH HOH . H 6 HOH A 23 323 36 HOH HOH . H 6 HOH A 24 324 163 HOH HOH . H 6 HOH A 25 325 79 HOH HOH . H 6 HOH A 26 326 152 HOH HOH . H 6 HOH A 27 327 190 HOH HOH . H 6 HOH A 28 328 173 HOH HOH . H 6 HOH A 29 329 191 HOH HOH . H 6 HOH A 30 330 219 HOH HOH . H 6 HOH A 31 331 140 HOH HOH . H 6 HOH A 32 332 33 HOH HOH . H 6 HOH A 33 333 3 HOH HOH . H 6 HOH A 34 334 24 HOH HOH . H 6 HOH A 35 335 205 HOH HOH . H 6 HOH A 36 336 59 HOH HOH . H 6 HOH A 37 337 226 HOH HOH . H 6 HOH A 38 338 133 HOH HOH . H 6 HOH A 39 339 25 HOH HOH . H 6 HOH A 40 340 19 HOH HOH . H 6 HOH A 41 341 174 HOH HOH . H 6 HOH A 42 342 16 HOH HOH . H 6 HOH A 43 343 77 HOH HOH . H 6 HOH A 44 344 111 HOH HOH . H 6 HOH A 45 345 211 HOH HOH . H 6 HOH A 46 346 110 HOH HOH . H 6 HOH A 47 347 9 HOH HOH . H 6 HOH A 48 348 57 HOH HOH . H 6 HOH A 49 349 181 HOH HOH . H 6 HOH A 50 350 52 HOH HOH . H 6 HOH A 51 351 108 HOH HOH . H 6 HOH A 52 352 26 HOH HOH . H 6 HOH A 53 353 7 HOH HOH . H 6 HOH A 54 354 67 HOH HOH . H 6 HOH A 55 355 138 HOH HOH . H 6 HOH A 56 356 132 HOH HOH . H 6 HOH A 57 357 29 HOH HOH . H 6 HOH A 58 358 63 HOH HOH . H 6 HOH A 59 359 21 HOH HOH . H 6 HOH A 60 360 192 HOH HOH . H 6 HOH A 61 361 216 HOH HOH . H 6 HOH A 62 362 13 HOH HOH . H 6 HOH A 63 363 60 HOH HOH . H 6 HOH A 64 364 37 HOH HOH . H 6 HOH A 65 365 2 HOH HOH . H 6 HOH A 66 366 28 HOH HOH . H 6 HOH A 67 367 247 HOH HOH . H 6 HOH A 68 368 103 HOH HOH . H 6 HOH A 69 369 50 HOH HOH . H 6 HOH A 70 370 167 HOH HOH . H 6 HOH A 71 371 31 HOH HOH . H 6 HOH A 72 372 51 HOH HOH . H 6 HOH A 73 373 43 HOH HOH . H 6 HOH A 74 374 55 HOH HOH . H 6 HOH A 75 375 124 HOH HOH . H 6 HOH A 76 376 177 HOH HOH . H 6 HOH A 77 377 39 HOH HOH . H 6 HOH A 78 378 136 HOH HOH . H 6 HOH A 79 379 155 HOH HOH . H 6 HOH A 80 380 70 HOH HOH . H 6 HOH A 81 381 135 HOH HOH . H 6 HOH A 82 382 148 HOH HOH . H 6 HOH A 83 383 90 HOH HOH . H 6 HOH A 84 384 141 HOH HOH . H 6 HOH A 85 385 89 HOH HOH . H 6 HOH A 86 386 169 HOH HOH . H 6 HOH A 87 387 93 HOH HOH . H 6 HOH A 88 388 250 HOH HOH . H 6 HOH A 89 389 102 HOH HOH . H 6 HOH A 90 390 100 HOH HOH . H 6 HOH A 91 391 215 HOH HOH . H 6 HOH A 92 392 246 HOH HOH . H 6 HOH A 93 393 105 HOH HOH . H 6 HOH A 94 394 104 HOH HOH . H 6 HOH A 95 395 214 HOH HOH . H 6 HOH A 96 396 186 HOH HOH . H 6 HOH A 97 397 47 HOH HOH . H 6 HOH A 98 398 8 HOH HOH . H 6 HOH A 99 399 40 HOH HOH . H 6 HOH A 100 400 84 HOH HOH . H 6 HOH A 101 401 206 HOH HOH . H 6 HOH A 102 402 82 HOH HOH . H 6 HOH A 103 403 38 HOH HOH . H 6 HOH A 104 404 12 HOH HOH . H 6 HOH A 105 405 62 HOH HOH . H 6 HOH A 106 406 20 HOH HOH . H 6 HOH A 107 407 80 HOH HOH . H 6 HOH A 108 408 225 HOH HOH . H 6 HOH A 109 409 101 HOH HOH . H 6 HOH A 110 410 207 HOH HOH . H 6 HOH A 111 411 27 HOH HOH . H 6 HOH A 112 412 18 HOH HOH . H 6 HOH A 113 413 123 HOH HOH . H 6 HOH A 114 414 227 HOH HOH . H 6 HOH A 115 415 249 HOH HOH . H 6 HOH A 116 416 17 HOH HOH . H 6 HOH A 117 417 248 HOH HOH . H 6 HOH A 118 418 96 HOH HOH . H 6 HOH A 119 419 106 HOH HOH . H 6 HOH A 120 420 76 HOH HOH . H 6 HOH A 121 421 74 HOH HOH . H 6 HOH A 122 422 176 HOH HOH . H 6 HOH A 123 423 203 HOH HOH . H 6 HOH A 124 424 234 HOH HOH . H 6 HOH A 125 425 35 HOH HOH . H 6 HOH A 126 426 58 HOH HOH . H 6 HOH A 127 427 182 HOH HOH . H 6 HOH A 128 428 6 HOH HOH . H 6 HOH A 129 429 220 HOH HOH . H 6 HOH A 130 430 22 HOH HOH . H 6 HOH A 131 431 64 HOH HOH . H 6 HOH A 132 432 126 HOH HOH . H 6 HOH A 133 433 10 HOH HOH . H 6 HOH A 134 434 48 HOH HOH . H 6 HOH A 135 435 238 HOH HOH . H 6 HOH A 136 436 168 HOH HOH . H 6 HOH A 137 437 87 HOH HOH . H 6 HOH A 138 438 185 HOH HOH . H 6 HOH A 139 439 184 HOH HOH . H 6 HOH A 140 440 179 HOH HOH . H 6 HOH A 141 441 231 HOH HOH . H 6 HOH A 142 442 11 HOH HOH . H 6 HOH A 143 443 23 HOH HOH . H 6 HOH A 144 444 232 HOH HOH . H 6 HOH A 145 445 144 HOH HOH . H 6 HOH A 146 446 170 HOH HOH . H 6 HOH A 147 447 128 HOH HOH . H 6 HOH A 148 448 109 HOH HOH . H 6 HOH A 149 449 154 HOH HOH . H 6 HOH A 150 450 14 HOH HOH . H 6 HOH A 151 451 218 HOH HOH . H 6 HOH A 152 452 69 HOH HOH . H 6 HOH A 153 453 172 HOH HOH . H 6 HOH A 154 454 180 HOH HOH . H 6 HOH A 155 455 117 HOH HOH . H 6 HOH A 156 456 224 HOH HOH . H 6 HOH A 157 457 239 HOH HOH . H 6 HOH A 158 458 159 HOH HOH . H 6 HOH A 159 459 210 HOH HOH . H 6 HOH A 160 460 158 HOH HOH . H 6 HOH A 161 461 151 HOH HOH . H 6 HOH A 162 462 122 HOH HOH . H 6 HOH A 163 463 204 HOH HOH . H 6 HOH A 164 464 116 HOH HOH . H 6 HOH A 165 465 237 HOH HOH . H 6 HOH A 166 466 233 HOH HOH . H 6 HOH A 167 467 54 HOH HOH . H 6 HOH A 168 468 189 HOH HOH . H 6 HOH A 169 469 150 HOH HOH . H 6 HOH A 170 470 118 HOH HOH . H 6 HOH A 171 471 78 HOH HOH . H 6 HOH A 172 472 200 HOH HOH . H 6 HOH A 173 473 134 HOH HOH . H 6 HOH A 174 474 85 HOH HOH . H 6 HOH A 175 475 175 HOH HOH . H 6 HOH A 176 476 213 HOH HOH . H 6 HOH A 177 477 235 HOH HOH . H 6 HOH A 178 478 193 HOH HOH . H 6 HOH A 179 479 236 HOH HOH . H 6 HOH A 180 480 65 HOH HOH . H 6 HOH A 181 481 198 HOH HOH . H 6 HOH A 182 482 171 HOH HOH . H 6 HOH A 183 483 162 HOH HOH . H 6 HOH A 184 484 97 HOH HOH . H 6 HOH A 185 485 88 HOH HOH . H 6 HOH A 186 486 201 HOH HOH . H 6 HOH A 187 487 71 HOH HOH . H 6 HOH A 188 488 240 HOH HOH . H 6 HOH A 189 489 160 HOH HOH . H 6 HOH A 190 490 53 HOH HOH . H 6 HOH A 191 491 91 HOH HOH . H 6 HOH A 192 492 127 HOH HOH . H 6 HOH A 193 493 157 HOH HOH . H 6 HOH A 194 494 195 HOH HOH . H 6 HOH A 195 495 99 HOH HOH . H 6 HOH A 196 496 221 HOH HOH . H 6 HOH A 197 497 113 HOH HOH . H 6 HOH A 198 498 98 HOH HOH . H 6 HOH A 199 499 229 HOH HOH . H 6 HOH A 200 500 5 HOH HOH . H 6 HOH A 201 501 114 HOH HOH . H 6 HOH A 202 502 223 HOH HOH . H 6 HOH A 203 503 230 HOH HOH . H 6 HOH A 204 504 46 HOH HOH . H 6 HOH A 205 505 202 HOH HOH . H 6 HOH A 206 506 86 HOH HOH . H 6 HOH A 207 507 165 HOH HOH . H 6 HOH A 208 508 199 HOH HOH . H 6 HOH A 209 509 73 HOH HOH . H 6 HOH A 210 510 187 HOH HOH . H 6 HOH A 211 511 112 HOH HOH . H 6 HOH A 212 512 125 HOH HOH . H 6 HOH A 213 513 56 HOH HOH . H 6 HOH A 214 514 129 HOH HOH . H 6 HOH A 215 515 83 HOH HOH . H 6 HOH A 216 516 243 HOH HOH . H 6 HOH A 217 517 75 HOH HOH . H 6 HOH A 218 518 92 HOH HOH . H 6 HOH A 219 519 153 HOH HOH . H 6 HOH A 220 520 209 HOH HOH . H 6 HOH A 221 521 183 HOH HOH . H 6 HOH A 222 522 208 HOH HOH . H 6 HOH A 223 523 222 HOH HOH . H 6 HOH A 224 524 41 HOH HOH . H 6 HOH A 225 525 32 HOH HOH . H 6 HOH A 226 526 241 HOH HOH . H 6 HOH A 227 527 242 HOH HOH . H 6 HOH A 228 528 228 HOH HOH . H 6 HOH A 229 529 217 HOH HOH . H 6 HOH A 230 530 197 HOH HOH . H 6 HOH A 231 531 156 HOH HOH . H 6 HOH A 232 532 164 HOH HOH . H 6 HOH A 233 533 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 89W . . . B 2 17.227 -3.942 17.786 0.5 20 ? C10 89W 201 A 1 HETATM 2 C C13 89W . . . B 2 15.129 -5.24 16.567 0.5 20 ? C13 89W 201 A 1 HETATM 3 C C15 89W . . . B 2 17.209 -5.312 17.672 0.5 20 ? C15 89W 201 A 1 HETATM 4 O O01 89W . . . B 2 19.221 -2.733 18.309 0.5 20 ? O01 89W 201 A 1 HETATM 5 C C02 89W . . . B 2 18.382 -3.535 18.647 0.5 20 ? C02 89W 201 A 1 HETATM 6 N N03 89W . . . B 2 18.162 -3.893 19.888 0.5 20 ? N03 89W 201 A 1 HETATM 7 C C04 89W . . . B 2 19.186 -4.344 20.749 0.5 20 ? C04 89W 201 A 1 HETATM 8 C C05 89W . . . B 2 18.524 -4.679 22.065 0.5 20 ? C05 89W 201 A 1 HETATM 9 C C06 89W . . . B 2 19.6 -4.82 23.138 0.5 20 ? C06 89W 201 A 1 HETATM 10 C C07 89W . . . B 2 20.587 -3.603 23.081 0.5 20 ? C07 89W 201 A 1 HETATM 11 N N08 89W . . . B 2 20.034 -2.591 22.253 0.5 20 ? N08 89W 201 A 1 HETATM 12 C C09 89W . . . B 2 19.97 -3.072 20.883 0.5 20 ? C09 89W 201 A 1 HETATM 13 C C11 89W . . . B 2 16.149 -3.246 17.231 0.5 20 ? C11 89W 201 A 1 HETATM 14 C C12 89W . . . B 2 15.121 -3.916 16.629 0.5 20 ? C12 89W 201 A 1 HETATM 15 C C14 89W . . . B 2 16.15 -5.935 17.063 0.5 20 ? C14 89W 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #