data_7H3K # _model_server_result.job_id gzFq7CceXlAnYsJ_X5dDFw _model_server_result.datetime_utc '2024-10-10 06:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7H3K # _exptl.entry_id 7H3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.87 _cell.angle_gamma 90 _cell.entry_id 7H3K _cell.length_a 86.188 _cell.length_b 56.398 _cell.length_c 32.418 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H3K _atom_sites.fract_transf_matrix[1][1] 0.011603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LQV A 1 201 147 LQV LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 -1 DMS DMS . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 4 DMS A 1 206 3 DMS DMS . H 5 HOH A 1 301 103 HOH HOH . H 5 HOH A 2 302 136 HOH HOH . H 5 HOH A 3 303 238 HOH HOH . H 5 HOH A 4 304 37 HOH HOH . H 5 HOH A 5 305 32 HOH HOH . H 5 HOH A 6 306 94 HOH HOH . H 5 HOH A 7 307 204 HOH HOH . H 5 HOH A 8 308 63 HOH HOH . H 5 HOH A 9 309 46 HOH HOH . H 5 HOH A 10 310 181 HOH HOH . H 5 HOH A 11 311 60 HOH HOH . H 5 HOH A 12 312 34 HOH HOH . H 5 HOH A 13 313 220 HOH HOH . H 5 HOH A 14 314 216 HOH HOH . H 5 HOH A 15 315 215 HOH HOH . H 5 HOH A 16 316 231 HOH HOH . H 5 HOH A 17 317 36 HOH HOH . H 5 HOH A 18 318 182 HOH HOH . H 5 HOH A 19 319 210 HOH HOH . H 5 HOH A 20 320 54 HOH HOH . H 5 HOH A 21 321 133 HOH HOH . H 5 HOH A 22 322 107 HOH HOH . H 5 HOH A 23 323 131 HOH HOH . H 5 HOH A 24 324 184 HOH HOH . H 5 HOH A 25 325 4 HOH HOH . H 5 HOH A 26 326 174 HOH HOH . H 5 HOH A 27 327 104 HOH HOH . H 5 HOH A 28 328 41 HOH HOH . H 5 HOH A 29 329 167 HOH HOH . H 5 HOH A 30 330 30 HOH HOH . H 5 HOH A 31 331 245 HOH HOH . H 5 HOH A 32 332 57 HOH HOH . H 5 HOH A 33 333 148 HOH HOH . H 5 HOH A 34 334 111 HOH HOH . H 5 HOH A 35 335 52 HOH HOH . H 5 HOH A 36 336 116 HOH HOH . H 5 HOH A 37 337 147 HOH HOH . H 5 HOH A 38 338 249 HOH HOH . H 5 HOH A 39 339 152 HOH HOH . H 5 HOH A 40 340 81 HOH HOH . H 5 HOH A 41 341 33 HOH HOH . H 5 HOH A 42 342 59 HOH HOH . H 5 HOH A 43 343 68 HOH HOH . H 5 HOH A 44 344 142 HOH HOH . H 5 HOH A 45 345 187 HOH HOH . H 5 HOH A 46 346 186 HOH HOH . H 5 HOH A 47 347 16 HOH HOH . H 5 HOH A 48 348 18 HOH HOH . H 5 HOH A 49 349 205 HOH HOH . H 5 HOH A 50 350 100 HOH HOH . H 5 HOH A 51 351 197 HOH HOH . H 5 HOH A 52 352 191 HOH HOH . H 5 HOH A 53 353 25 HOH HOH . H 5 HOH A 54 354 2 HOH HOH . H 5 HOH A 55 355 24 HOH HOH . H 5 HOH A 56 356 12 HOH HOH . H 5 HOH A 57 357 161 HOH HOH . H 5 HOH A 58 358 248 HOH HOH . H 5 HOH A 59 359 200 HOH HOH . H 5 HOH A 60 360 198 HOH HOH . H 5 HOH A 61 361 214 HOH HOH . H 5 HOH A 62 362 50 HOH HOH . H 5 HOH A 63 363 29 HOH HOH . H 5 HOH A 64 364 97 HOH HOH . H 5 HOH A 65 365 7 HOH HOH . H 5 HOH A 66 366 77 HOH HOH . H 5 HOH A 67 367 43 HOH HOH . H 5 HOH A 68 368 19 HOH HOH . H 5 HOH A 69 369 190 HOH HOH . H 5 HOH A 70 370 27 HOH HOH . H 5 HOH A 71 371 121 HOH HOH . H 5 HOH A 72 372 28 HOH HOH . H 5 HOH A 73 373 146 HOH HOH . H 5 HOH A 74 374 67 HOH HOH . H 5 HOH A 75 375 21 HOH HOH . H 5 HOH A 76 376 9 HOH HOH . H 5 HOH A 77 377 71 HOH HOH . H 5 HOH A 78 378 17 HOH HOH . H 5 HOH A 79 379 72 HOH HOH . H 5 HOH A 80 380 88 HOH HOH . H 5 HOH A 81 381 26 HOH HOH . H 5 HOH A 82 382 178 HOH HOH . H 5 HOH A 83 383 126 HOH HOH . H 5 HOH A 84 384 211 HOH HOH . H 5 HOH A 85 385 96 HOH HOH . H 5 HOH A 86 386 110 HOH HOH . H 5 HOH A 87 387 137 HOH HOH . H 5 HOH A 88 388 79 HOH HOH . H 5 HOH A 89 389 40 HOH HOH . H 5 HOH A 90 390 84 HOH HOH . H 5 HOH A 91 391 169 HOH HOH . H 5 HOH A 92 392 157 HOH HOH . H 5 HOH A 93 393 82 HOH HOH . H 5 HOH A 94 394 141 HOH HOH . H 5 HOH A 95 395 42 HOH HOH . H 5 HOH A 96 396 11 HOH HOH . H 5 HOH A 97 397 62 HOH HOH . H 5 HOH A 98 398 132 HOH HOH . H 5 HOH A 99 399 155 HOH HOH . H 5 HOH A 100 400 106 HOH HOH . H 5 HOH A 101 401 233 HOH HOH . H 5 HOH A 102 402 105 HOH HOH . H 5 HOH A 103 403 112 HOH HOH . H 5 HOH A 104 404 15 HOH HOH . H 5 HOH A 105 405 177 HOH HOH . H 5 HOH A 106 406 168 HOH HOH . H 5 HOH A 107 407 234 HOH HOH . H 5 HOH A 108 408 8 HOH HOH . H 5 HOH A 109 409 78 HOH HOH . H 5 HOH A 110 410 250 HOH HOH . H 5 HOH A 111 411 113 HOH HOH . H 5 HOH A 112 412 69 HOH HOH . H 5 HOH A 113 413 51 HOH HOH . H 5 HOH A 114 414 35 HOH HOH . H 5 HOH A 115 415 138 HOH HOH . H 5 HOH A 116 416 80 HOH HOH . H 5 HOH A 117 417 49 HOH HOH . H 5 HOH A 118 418 120 HOH HOH . H 5 HOH A 119 419 90 HOH HOH . H 5 HOH A 120 420 61 HOH HOH . H 5 HOH A 121 421 119 HOH HOH . H 5 HOH A 122 422 20 HOH HOH . H 5 HOH A 123 423 98 HOH HOH . H 5 HOH A 124 424 38 HOH HOH . H 5 HOH A 125 425 91 HOH HOH . H 5 HOH A 126 426 10 HOH HOH . H 5 HOH A 127 427 95 HOH HOH . H 5 HOH A 128 428 70 HOH HOH . H 5 HOH A 129 429 123 HOH HOH . H 5 HOH A 130 430 170 HOH HOH . H 5 HOH A 131 431 39 HOH HOH . H 5 HOH A 132 432 23 HOH HOH . H 5 HOH A 133 433 224 HOH HOH . H 5 HOH A 134 434 89 HOH HOH . H 5 HOH A 135 435 213 HOH HOH . H 5 HOH A 136 436 66 HOH HOH . H 5 HOH A 137 437 230 HOH HOH . H 5 HOH A 138 438 76 HOH HOH . H 5 HOH A 139 439 128 HOH HOH . H 5 HOH A 140 440 171 HOH HOH . H 5 HOH A 141 441 235 HOH HOH . H 5 HOH A 142 442 74 HOH HOH . H 5 HOH A 143 443 65 HOH HOH . H 5 HOH A 144 444 159 HOH HOH . H 5 HOH A 145 445 101 HOH HOH . H 5 HOH A 146 446 102 HOH HOH . H 5 HOH A 147 447 237 HOH HOH . H 5 HOH A 148 448 64 HOH HOH . H 5 HOH A 149 449 5 HOH HOH . H 5 HOH A 150 450 192 HOH HOH . H 5 HOH A 151 451 55 HOH HOH . H 5 HOH A 152 452 108 HOH HOH . H 5 HOH A 153 453 13 HOH HOH . H 5 HOH A 154 454 144 HOH HOH . H 5 HOH A 155 455 212 HOH HOH . H 5 HOH A 156 456 150 HOH HOH . H 5 HOH A 157 457 201 HOH HOH . H 5 HOH A 158 458 175 HOH HOH . H 5 HOH A 159 459 87 HOH HOH . H 5 HOH A 160 460 127 HOH HOH . H 5 HOH A 161 461 180 HOH HOH . H 5 HOH A 162 462 154 HOH HOH . H 5 HOH A 163 463 156 HOH HOH . H 5 HOH A 164 464 158 HOH HOH . H 5 HOH A 165 465 173 HOH HOH . H 5 HOH A 166 466 228 HOH HOH . H 5 HOH A 167 467 162 HOH HOH . H 5 HOH A 168 468 135 HOH HOH . H 5 HOH A 169 469 47 HOH HOH . H 5 HOH A 170 470 45 HOH HOH . H 5 HOH A 171 471 99 HOH HOH . H 5 HOH A 172 472 246 HOH HOH . H 5 HOH A 173 473 232 HOH HOH . H 5 HOH A 174 474 207 HOH HOH . H 5 HOH A 175 475 164 HOH HOH . H 5 HOH A 176 476 85 HOH HOH . H 5 HOH A 177 477 225 HOH HOH . H 5 HOH A 178 478 240 HOH HOH . H 5 HOH A 179 479 73 HOH HOH . H 5 HOH A 180 480 86 HOH HOH . H 5 HOH A 181 481 229 HOH HOH . H 5 HOH A 182 482 134 HOH HOH . H 5 HOH A 183 483 114 HOH HOH . H 5 HOH A 184 484 129 HOH HOH . H 5 HOH A 185 485 185 HOH HOH . H 5 HOH A 186 486 221 HOH HOH . H 5 HOH A 187 487 122 HOH HOH . H 5 HOH A 188 488 56 HOH HOH . H 5 HOH A 189 489 209 HOH HOH . H 5 HOH A 190 490 208 HOH HOH . H 5 HOH A 191 491 153 HOH HOH . H 5 HOH A 192 492 165 HOH HOH . H 5 HOH A 193 493 223 HOH HOH . H 5 HOH A 194 494 241 HOH HOH . H 5 HOH A 195 495 202 HOH HOH . H 5 HOH A 196 496 206 HOH HOH . H 5 HOH A 197 497 83 HOH HOH . H 5 HOH A 198 498 226 HOH HOH . H 5 HOH A 199 499 199 HOH HOH . H 5 HOH A 200 500 118 HOH HOH . H 5 HOH A 201 501 75 HOH HOH . H 5 HOH A 202 502 239 HOH HOH . H 5 HOH A 203 503 160 HOH HOH . H 5 HOH A 204 504 92 HOH HOH . H 5 HOH A 205 505 125 HOH HOH . H 5 HOH A 206 506 222 HOH HOH . H 5 HOH A 207 507 247 HOH HOH . H 5 HOH A 208 508 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 15.448 21.073 8.629 1 37.18 ? S DMS 204 A 1 HETATM 2 O O DMS . . . E 4 14.474 21.232 9.765 1 35.82 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . E 4 14.47 20.94 7.137 1 38.95 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . E 4 16.134 22.7 8.327 1 38.4 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #