data_7H3M # _model_server_result.job_id TNPONpQ4IcrB-Y6Qol2Z3Q _model_server_result.datetime_utc '2024-11-22 16:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7H3M # _exptl.entry_id 7H3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.03 _cell.angle_gamma 90 _cell.entry_id 7H3M _cell.length_a 72.691 _cell.length_b 60.79 _cell.length_c 32.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H3M _atom_sites.fract_transf_matrix[1][1] 0.013757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000727 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TJL A 1 201 147 TJL LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 0 DMS DMS . E 4 DMS A 1 204 1 DMS DMS . F 4 DMS A 1 205 3 DMS DMS . G 4 DMS A 1 206 4 DMS DMS . H 4 DMS A 1 207 5 DMS DMS . I 4 DMS A 1 208 6 DMS DMS . J 5 HOH A 1 301 123 HOH HOH . J 5 HOH A 2 302 51 HOH HOH . J 5 HOH A 3 303 56 HOH HOH . J 5 HOH A 4 304 90 HOH HOH . J 5 HOH A 5 305 84 HOH HOH . J 5 HOH A 6 306 86 HOH HOH . J 5 HOH A 7 307 5 HOH HOH . J 5 HOH A 8 308 126 HOH HOH . J 5 HOH A 9 309 60 HOH HOH . J 5 HOH A 10 310 54 HOH HOH . J 5 HOH A 11 311 124 HOH HOH . J 5 HOH A 12 312 7 HOH HOH . J 5 HOH A 13 313 98 HOH HOH . J 5 HOH A 14 314 55 HOH HOH . J 5 HOH A 15 315 29 HOH HOH . J 5 HOH A 16 316 45 HOH HOH . J 5 HOH A 17 317 62 HOH HOH . J 5 HOH A 18 318 73 HOH HOH . J 5 HOH A 19 319 70 HOH HOH . J 5 HOH A 20 320 100 HOH HOH . J 5 HOH A 21 321 34 HOH HOH . J 5 HOH A 22 322 18 HOH HOH . J 5 HOH A 23 323 33 HOH HOH . J 5 HOH A 24 324 4 HOH HOH . J 5 HOH A 25 325 89 HOH HOH . J 5 HOH A 26 326 57 HOH HOH . J 5 HOH A 27 327 125 HOH HOH . J 5 HOH A 28 328 24 HOH HOH . J 5 HOH A 29 329 32 HOH HOH . J 5 HOH A 30 330 49 HOH HOH . J 5 HOH A 31 331 82 HOH HOH . J 5 HOH A 32 332 115 HOH HOH . J 5 HOH A 33 333 79 HOH HOH . J 5 HOH A 34 334 76 HOH HOH . J 5 HOH A 35 335 88 HOH HOH . J 5 HOH A 36 336 101 HOH HOH . J 5 HOH A 37 337 59 HOH HOH . J 5 HOH A 38 338 11 HOH HOH . J 5 HOH A 39 339 25 HOH HOH . J 5 HOH A 40 340 20 HOH HOH . J 5 HOH A 41 341 99 HOH HOH . J 5 HOH A 42 342 35 HOH HOH . J 5 HOH A 43 343 9 HOH HOH . J 5 HOH A 44 344 8 HOH HOH . J 5 HOH A 45 345 53 HOH HOH . J 5 HOH A 46 346 72 HOH HOH . J 5 HOH A 47 347 16 HOH HOH . J 5 HOH A 48 348 87 HOH HOH . J 5 HOH A 49 349 1 HOH HOH . J 5 HOH A 50 350 122 HOH HOH . J 5 HOH A 51 351 83 HOH HOH . J 5 HOH A 52 352 30 HOH HOH . J 5 HOH A 53 353 15 HOH HOH . J 5 HOH A 54 354 85 HOH HOH . J 5 HOH A 55 355 64 HOH HOH . J 5 HOH A 56 356 41 HOH HOH . J 5 HOH A 57 357 31 HOH HOH . J 5 HOH A 58 358 6 HOH HOH . J 5 HOH A 59 359 21 HOH HOH . J 5 HOH A 60 360 27 HOH HOH . J 5 HOH A 61 361 61 HOH HOH . J 5 HOH A 62 362 93 HOH HOH . J 5 HOH A 63 363 28 HOH HOH . J 5 HOH A 64 364 97 HOH HOH . J 5 HOH A 65 365 105 HOH HOH . J 5 HOH A 66 366 67 HOH HOH . J 5 HOH A 67 367 95 HOH HOH . J 5 HOH A 68 368 2 HOH HOH . J 5 HOH A 69 369 69 HOH HOH . J 5 HOH A 70 370 81 HOH HOH . J 5 HOH A 71 371 46 HOH HOH . J 5 HOH A 72 372 17 HOH HOH . J 5 HOH A 73 373 19 HOH HOH . J 5 HOH A 74 374 10 HOH HOH . J 5 HOH A 75 375 12 HOH HOH . J 5 HOH A 76 376 71 HOH HOH . J 5 HOH A 77 377 66 HOH HOH . J 5 HOH A 78 378 40 HOH HOH . J 5 HOH A 79 379 26 HOH HOH . J 5 HOH A 80 380 74 HOH HOH . J 5 HOH A 81 381 48 HOH HOH . J 5 HOH A 82 382 75 HOH HOH . J 5 HOH A 83 383 36 HOH HOH . J 5 HOH A 84 384 68 HOH HOH . J 5 HOH A 85 385 80 HOH HOH . J 5 HOH A 86 386 14 HOH HOH . J 5 HOH A 87 387 3 HOH HOH . J 5 HOH A 88 388 128 HOH HOH . J 5 HOH A 89 389 78 HOH HOH . J 5 HOH A 90 390 22 HOH HOH . J 5 HOH A 91 391 52 HOH HOH . J 5 HOH A 92 392 65 HOH HOH . J 5 HOH A 93 393 38 HOH HOH . J 5 HOH A 94 394 119 HOH HOH . J 5 HOH A 95 395 111 HOH HOH . J 5 HOH A 96 396 77 HOH HOH . J 5 HOH A 97 397 102 HOH HOH . J 5 HOH A 98 398 39 HOH HOH . J 5 HOH A 99 399 104 HOH HOH . J 5 HOH A 100 400 47 HOH HOH . J 5 HOH A 101 401 114 HOH HOH . J 5 HOH A 102 402 103 HOH HOH . J 5 HOH A 103 403 110 HOH HOH . J 5 HOH A 104 404 91 HOH HOH . J 5 HOH A 105 405 117 HOH HOH . J 5 HOH A 106 406 94 HOH HOH . J 5 HOH A 107 407 23 HOH HOH . J 5 HOH A 108 408 50 HOH HOH . J 5 HOH A 109 409 106 HOH HOH . J 5 HOH A 110 410 120 HOH HOH . J 5 HOH A 111 411 113 HOH HOH . J 5 HOH A 112 412 58 HOH HOH . J 5 HOH A 113 413 63 HOH HOH . J 5 HOH A 114 414 118 HOH HOH . J 5 HOH A 115 415 96 HOH HOH . J 5 HOH A 116 416 43 HOH HOH . J 5 HOH A 117 417 116 HOH HOH . J 5 HOH A 118 418 112 HOH HOH . J 5 HOH A 119 419 92 HOH HOH . J 5 HOH A 120 420 107 HOH HOH . J 5 HOH A 121 421 121 HOH HOH . J 5 HOH A 122 422 108 HOH HOH . J 5 HOH A 123 423 127 HOH HOH . J 5 HOH A 124 424 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 14.735 22.328 7.43 1 68.74 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 4 14.257 22.269 8.855 1 51.2 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 4 13.28 22.559 6.427 1 63.06 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 4 15.447 23.944 7.226 1 67.19 ? C2 DMS 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #