data_7H3Y # _model_server_result.job_id CMPyeMpDvdsKbTPjElSdBg _model_server_result.datetime_utc '2024-11-13 11:12:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 7H3Y # _exptl.entry_id 7H3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.32 _cell.angle_gamma 90 _cell.entry_id 7H3Y _cell.length_a 86.217 _cell.length_b 56.577 _cell.length_c 32.439 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 26 A ASN 26 1_555 B O09 JH1 . A JH1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H3Y _atom_sites.fract_transf_matrix[1][1] 0.011599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JH1 A 1 201 147 JH1 LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 -1 DMS DMS . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 4 DMS A 1 206 3 DMS DMS . H 4 DMS A 1 207 6 DMS DMS . I 5 SO4 A 1 208 1 SO4 SO4 . J 6 HOH A 1 301 227 HOH HOH . J 6 HOH A 2 302 137 HOH HOH . J 6 HOH A 3 303 238 HOH HOH . J 6 HOH A 4 304 250 HOH HOH . J 6 HOH A 5 305 3 HOH HOH . J 6 HOH A 6 306 94 HOH HOH . J 6 HOH A 7 307 131 HOH HOH . J 6 HOH A 8 308 245 HOH HOH . J 6 HOH A 9 309 108 HOH HOH . J 6 HOH A 10 310 234 HOH HOH . J 6 HOH A 11 311 79 HOH HOH . J 6 HOH A 12 312 107 HOH HOH . J 6 HOH A 13 313 186 HOH HOH . J 6 HOH A 14 314 215 HOH HOH . J 6 HOH A 15 315 77 HOH HOH . J 6 HOH A 16 316 147 HOH HOH . J 6 HOH A 17 317 34 HOH HOH . J 6 HOH A 18 318 150 HOH HOH . J 6 HOH A 19 319 68 HOH HOH . J 6 HOH A 20 320 248 HOH HOH . J 6 HOH A 21 321 183 HOH HOH . J 6 HOH A 22 322 148 HOH HOH . J 6 HOH A 23 323 173 HOH HOH . J 6 HOH A 24 324 219 HOH HOH . J 6 HOH A 25 325 103 HOH HOH . J 6 HOH A 26 326 193 HOH HOH . J 6 HOH A 27 327 181 HOH HOH . J 6 HOH A 28 328 72 HOH HOH . J 6 HOH A 29 329 178 HOH HOH . J 6 HOH A 30 330 57 HOH HOH . J 6 HOH A 31 331 191 HOH HOH . J 6 HOH A 32 332 124 HOH HOH . J 6 HOH A 33 333 30 HOH HOH . J 6 HOH A 34 334 180 HOH HOH . J 6 HOH A 35 335 249 HOH HOH . J 6 HOH A 36 336 4 HOH HOH . J 6 HOH A 37 337 116 HOH HOH . J 6 HOH A 38 338 47 HOH HOH . J 6 HOH A 39 339 217 HOH HOH . J 6 HOH A 40 340 104 HOH HOH . J 6 HOH A 41 341 59 HOH HOH . J 6 HOH A 42 342 21 HOH HOH . J 6 HOH A 43 343 16 HOH HOH . J 6 HOH A 44 344 205 HOH HOH . J 6 HOH A 45 345 109 HOH HOH . J 6 HOH A 46 346 52 HOH HOH . J 6 HOH A 47 347 195 HOH HOH . J 6 HOH A 48 348 211 HOH HOH . J 6 HOH A 49 349 216 HOH HOH . J 6 HOH A 50 350 37 HOH HOH . J 6 HOH A 51 351 152 HOH HOH . J 6 HOH A 52 352 43 HOH HOH . J 6 HOH A 53 353 13 HOH HOH . J 6 HOH A 54 354 7 HOH HOH . J 6 HOH A 55 355 60 HOH HOH . J 6 HOH A 56 356 29 HOH HOH . J 6 HOH A 57 357 168 HOH HOH . J 6 HOH A 58 358 67 HOH HOH . J 6 HOH A 59 359 53 HOH HOH . J 6 HOH A 60 360 91 HOH HOH . J 6 HOH A 61 361 88 HOH HOH . J 6 HOH A 62 362 2 HOH HOH . J 6 HOH A 63 363 179 HOH HOH . J 6 HOH A 64 364 27 HOH HOH . J 6 HOH A 65 365 24 HOH HOH . J 6 HOH A 66 366 33 HOH HOH . J 6 HOH A 67 367 97 HOH HOH . J 6 HOH A 68 368 111 HOH HOH . J 6 HOH A 69 369 113 HOH HOH . J 6 HOH A 70 370 81 HOH HOH . J 6 HOH A 71 371 36 HOH HOH . J 6 HOH A 72 372 144 HOH HOH . J 6 HOH A 73 373 161 HOH HOH . J 6 HOH A 74 374 141 HOH HOH . J 6 HOH A 75 375 39 HOH HOH . J 6 HOH A 76 376 167 HOH HOH . J 6 HOH A 77 377 28 HOH HOH . J 6 HOH A 78 378 62 HOH HOH . J 6 HOH A 79 379 42 HOH HOH . J 6 HOH A 80 380 12 HOH HOH . J 6 HOH A 81 381 25 HOH HOH . J 6 HOH A 82 382 82 HOH HOH . J 6 HOH A 83 383 63 HOH HOH . J 6 HOH A 84 384 182 HOH HOH . J 6 HOH A 85 385 26 HOH HOH . J 6 HOH A 86 386 90 HOH HOH . J 6 HOH A 87 387 45 HOH HOH . J 6 HOH A 88 388 19 HOH HOH . J 6 HOH A 89 389 50 HOH HOH . J 6 HOH A 90 390 9 HOH HOH . J 6 HOH A 91 391 84 HOH HOH . J 6 HOH A 92 392 138 HOH HOH . J 6 HOH A 93 393 14 HOH HOH . J 6 HOH A 94 394 15 HOH HOH . J 6 HOH A 95 395 70 HOH HOH . J 6 HOH A 96 396 112 HOH HOH . J 6 HOH A 97 397 8 HOH HOH . J 6 HOH A 98 398 204 HOH HOH . J 6 HOH A 99 399 106 HOH HOH . J 6 HOH A 100 400 169 HOH HOH . J 6 HOH A 101 401 119 HOH HOH . J 6 HOH A 102 402 49 HOH HOH . J 6 HOH A 103 403 100 HOH HOH . J 6 HOH A 104 404 17 HOH HOH . J 6 HOH A 105 405 18 HOH HOH . J 6 HOH A 106 406 177 HOH HOH . J 6 HOH A 107 407 48 HOH HOH . J 6 HOH A 108 408 110 HOH HOH . J 6 HOH A 109 409 121 HOH HOH . J 6 HOH A 110 410 174 HOH HOH . J 6 HOH A 111 411 55 HOH HOH . J 6 HOH A 112 412 197 HOH HOH . J 6 HOH A 113 413 170 HOH HOH . J 6 HOH A 114 414 126 HOH HOH . J 6 HOH A 115 415 78 HOH HOH . J 6 HOH A 116 416 96 HOH HOH . J 6 HOH A 117 417 71 HOH HOH . J 6 HOH A 118 418 155 HOH HOH . J 6 HOH A 119 419 38 HOH HOH . J 6 HOH A 120 420 54 HOH HOH . J 6 HOH A 121 421 41 HOH HOH . J 6 HOH A 122 422 20 HOH HOH . J 6 HOH A 123 423 184 HOH HOH . J 6 HOH A 124 424 5 HOH HOH . J 6 HOH A 125 425 95 HOH HOH . J 6 HOH A 126 426 66 HOH HOH . J 6 HOH A 127 427 40 HOH HOH . J 6 HOH A 128 428 214 HOH HOH . J 6 HOH A 129 429 136 HOH HOH . J 6 HOH A 130 430 135 HOH HOH . J 6 HOH A 131 431 80 HOH HOH . J 6 HOH A 132 432 58 HOH HOH . J 6 HOH A 133 433 11 HOH HOH . J 6 HOH A 134 434 105 HOH HOH . J 6 HOH A 135 435 64 HOH HOH . J 6 HOH A 136 436 198 HOH HOH . J 6 HOH A 137 437 31 HOH HOH . J 6 HOH A 138 438 132 HOH HOH . J 6 HOH A 139 439 35 HOH HOH . J 6 HOH A 140 440 51 HOH HOH . J 6 HOH A 141 441 102 HOH HOH . J 6 HOH A 142 442 203 HOH HOH . J 6 HOH A 143 443 176 HOH HOH . J 6 HOH A 144 444 212 HOH HOH . J 6 HOH A 145 445 23 HOH HOH . J 6 HOH A 146 446 237 HOH HOH . J 6 HOH A 147 447 118 HOH HOH . J 6 HOH A 148 448 10 HOH HOH . J 6 HOH A 149 449 146 HOH HOH . J 6 HOH A 150 450 93 HOH HOH . J 6 HOH A 151 451 123 HOH HOH . J 6 HOH A 152 452 230 HOH HOH . J 6 HOH A 153 453 89 HOH HOH . J 6 HOH A 154 454 76 HOH HOH . J 6 HOH A 155 455 171 HOH HOH . J 6 HOH A 156 456 6 HOH HOH . J 6 HOH A 157 457 192 HOH HOH . J 6 HOH A 158 458 220 HOH HOH . J 6 HOH A 159 459 159 HOH HOH . J 6 HOH A 160 460 69 HOH HOH . J 6 HOH A 161 461 246 HOH HOH . J 6 HOH A 162 462 128 HOH HOH . J 6 HOH A 163 463 224 HOH HOH . J 6 HOH A 164 464 61 HOH HOH . J 6 HOH A 165 465 200 HOH HOH . J 6 HOH A 166 466 74 HOH HOH . J 6 HOH A 167 467 218 HOH HOH . J 6 HOH A 168 468 213 HOH HOH . J 6 HOH A 169 469 210 HOH HOH . J 6 HOH A 170 470 247 HOH HOH . J 6 HOH A 171 471 65 HOH HOH . J 6 HOH A 172 472 22 HOH HOH . J 6 HOH A 173 473 98 HOH HOH . J 6 HOH A 174 474 117 HOH HOH . J 6 HOH A 175 475 154 HOH HOH . J 6 HOH A 176 476 233 HOH HOH . J 6 HOH A 177 477 231 HOH HOH . J 6 HOH A 178 478 158 HOH HOH . J 6 HOH A 179 479 175 HOH HOH . J 6 HOH A 180 480 87 HOH HOH . J 6 HOH A 181 481 151 HOH HOH . J 6 HOH A 182 482 201 HOH HOH . J 6 HOH A 183 483 207 HOH HOH . J 6 HOH A 184 484 162 HOH HOH . J 6 HOH A 185 485 99 HOH HOH . J 6 HOH A 186 486 190 HOH HOH . J 6 HOH A 187 487 228 HOH HOH . J 6 HOH A 188 488 157 HOH HOH . J 6 HOH A 189 489 134 HOH HOH . J 6 HOH A 190 490 232 HOH HOH . J 6 HOH A 191 491 226 HOH HOH . J 6 HOH A 192 492 127 HOH HOH . J 6 HOH A 193 493 140 HOH HOH . J 6 HOH A 194 494 239 HOH HOH . J 6 HOH A 195 495 240 HOH HOH . J 6 HOH A 196 496 229 HOH HOH . J 6 HOH A 197 497 225 HOH HOH . J 6 HOH A 198 498 73 HOH HOH . J 6 HOH A 199 499 163 HOH HOH . J 6 HOH A 200 500 86 HOH HOH . J 6 HOH A 201 501 172 HOH HOH . J 6 HOH A 202 502 199 HOH HOH . J 6 HOH A 203 503 189 HOH HOH . J 6 HOH A 204 504 32 HOH HOH . J 6 HOH A 205 505 185 HOH HOH . J 6 HOH A 206 506 85 HOH HOH . J 6 HOH A 207 507 202 HOH HOH . J 6 HOH A 208 508 221 HOH HOH . J 6 HOH A 209 509 165 HOH HOH . J 6 HOH A 210 510 209 HOH HOH . J 6 HOH A 211 511 223 HOH HOH . J 6 HOH A 212 512 83 HOH HOH . J 6 HOH A 213 513 236 HOH HOH . J 6 HOH A 214 514 56 HOH HOH . J 6 HOH A 215 515 129 HOH HOH . J 6 HOH A 216 516 187 HOH HOH . J 6 HOH A 217 517 208 HOH HOH . J 6 HOH A 218 518 75 HOH HOH . J 6 HOH A 219 519 142 HOH HOH . J 6 HOH A 220 520 235 HOH HOH . J 6 HOH A 221 521 206 HOH HOH . J 6 HOH A 222 522 241 HOH HOH . J 6 HOH A 223 523 114 HOH HOH . J 6 HOH A 224 524 153 HOH HOH . J 6 HOH A 225 525 160 HOH HOH . J 6 HOH A 226 526 222 HOH HOH . J 6 HOH A 227 527 92 HOH HOH . J 6 HOH A 228 528 125 HOH HOH . J 6 HOH A 229 529 243 HOH HOH . J 6 HOH A 230 530 242 HOH HOH . J 6 HOH A 231 531 164 HOH HOH . J 6 HOH A 232 532 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 4 19.21 -3.006 23.931 1 54.77 ? S DMS 205 A 1 HETATM 2 O O DMS . . . F 4 19.173 -3.957 25.1 1 54.2 ? O DMS 205 A 1 HETATM 3 C C1 DMS . . . F 4 20.544 -3.572 22.883 1 53.8 ? C1 DMS 205 A 1 HETATM 4 C C2 DMS . . . F 4 17.883 -3.494 22.881 1 44.06 ? C2 DMS 205 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #