data_7H41 # _model_server_result.job_id 6559YOZSJHFBNE9gpHriGA _model_server_result.datetime_utc '2024-11-28 01:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7H41 # _exptl.entry_id 7H41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.217 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (3R)-3-(3-fluorophenoxy)-1-methylpyrrolidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.11 _cell.angle_gamma 90 _cell.entry_id 7H41 _cell.length_a 72.506 _cell.length_b 60.485 _cell.length_c 32.415 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C11 H12 F N O2' _chem_comp.formula_weight 209.217 _chem_comp.id A1AM9 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-(3-fluorophenoxy)-1-methylpyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N A1AM9 sing 1 n n N C1 A1AM9 sing 2 n n C1 C2 A1AM9 sing 3 n n C2 C3 A1AM9 sing 4 n n O C3 A1AM9 sing 5 n n C4 O A1AM9 sing 6 n n C4 C5 A1AM9 doub 7 n y C5 C6 A1AM9 sing 8 n y C6 C7 A1AM9 doub 9 n y C7 C8 A1AM9 sing 10 n y F C8 A1AM9 sing 11 n n C8 C9 A1AM9 doub 12 n y C9 C4 A1AM9 sing 13 n y C3 C10 A1AM9 sing 14 n n N C10 A1AM9 sing 15 n n C10 O1 A1AM9 doub 16 n n C5 H8 A1AM9 sing 17 n n C6 H9 A1AM9 sing 18 n n C7 H10 A1AM9 sing 19 n n C H2 A1AM9 sing 20 n n C H1 A1AM9 sing 21 n n C H A1AM9 sing 22 n n C1 H4 A1AM9 sing 23 n n C1 H3 A1AM9 sing 24 n n C2 H6 A1AM9 sing 25 n n C2 H5 A1AM9 sing 26 n n C3 H7 A1AM9 sing 27 n n C9 H11 A1AM9 sing 28 n n # _atom_sites.entry_id 7H41 _atom_sites.fract_transf_matrix[1][1] 0.013792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AM9 A 1 201 147 A1AM9 LIG . C 2 A1AM9 A 1 202 201 A1AM9 LIG . D 3 ZN A 1 203 1 ZN ZN . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 5 HOH A 1 301 20 HOH HOH . G 5 HOH A 2 302 51 HOH HOH . G 5 HOH A 3 303 18 HOH HOH . G 5 HOH A 4 304 64 HOH HOH . G 5 HOH A 5 305 34 HOH HOH . G 5 HOH A 6 306 55 HOH HOH . G 5 HOH A 7 307 29 HOH HOH . G 5 HOH A 8 308 40 HOH HOH . G 5 HOH A 9 309 5 HOH HOH . G 5 HOH A 10 310 48 HOH HOH . G 5 HOH A 11 311 8 HOH HOH . G 5 HOH A 12 312 15 HOH HOH . G 5 HOH A 13 313 7 HOH HOH . G 5 HOH A 14 314 21 HOH HOH . G 5 HOH A 15 315 11 HOH HOH . G 5 HOH A 16 316 1 HOH HOH . G 5 HOH A 17 317 4 HOH HOH . G 5 HOH A 18 318 63 HOH HOH . G 5 HOH A 19 319 53 HOH HOH . G 5 HOH A 20 320 17 HOH HOH . G 5 HOH A 21 321 9 HOH HOH . G 5 HOH A 22 322 54 HOH HOH . G 5 HOH A 23 323 33 HOH HOH . G 5 HOH A 24 324 45 HOH HOH . G 5 HOH A 25 325 14 HOH HOH . G 5 HOH A 26 326 49 HOH HOH . G 5 HOH A 27 327 41 HOH HOH . G 5 HOH A 28 328 27 HOH HOH . G 5 HOH A 29 329 16 HOH HOH . G 5 HOH A 30 330 19 HOH HOH . G 5 HOH A 31 331 32 HOH HOH . G 5 HOH A 32 332 6 HOH HOH . G 5 HOH A 33 333 61 HOH HOH . G 5 HOH A 34 334 60 HOH HOH . G 5 HOH A 35 335 30 HOH HOH . G 5 HOH A 36 336 25 HOH HOH . G 5 HOH A 37 337 62 HOH HOH . G 5 HOH A 38 338 57 HOH HOH . G 5 HOH A 39 339 58 HOH HOH . G 5 HOH A 40 340 10 HOH HOH . G 5 HOH A 41 341 24 HOH HOH . G 5 HOH A 42 342 39 HOH HOH . G 5 HOH A 43 343 46 HOH HOH . G 5 HOH A 44 344 36 HOH HOH . G 5 HOH A 45 345 26 HOH HOH . G 5 HOH A 46 346 35 HOH HOH . G 5 HOH A 47 347 59 HOH HOH . G 5 HOH A 48 348 2 HOH HOH . G 5 HOH A 49 349 52 HOH HOH . G 5 HOH A 50 350 3 HOH HOH . G 5 HOH A 51 351 22 HOH HOH . G 5 HOH A 52 352 12 HOH HOH . G 5 HOH A 53 353 28 HOH HOH . G 5 HOH A 54 354 50 HOH HOH . G 5 HOH A 55 355 67 HOH HOH . G 5 HOH A 56 356 38 HOH HOH . G 5 HOH A 57 357 65 HOH HOH . G 5 HOH A 58 358 43 HOH HOH . G 5 HOH A 59 359 56 HOH HOH . G 5 HOH A 60 360 31 HOH HOH . G 5 HOH A 61 361 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AM9 . . . C 2 30.435 22.913 18.139 0.74 31.64 ? C4 A1AM9 202 A 1 HETATM 2 C C5 A1AM9 . . . C 2 30.568 24.288 18.268 0.74 30.29 ? C5 A1AM9 202 A 1 HETATM 3 C C6 A1AM9 . . . C 2 31.44 24.969 17.438 0.74 29.53 ? C6 A1AM9 202 A 1 HETATM 4 C C7 A1AM9 . . . C 2 32.168 24.292 16.477 0.74 30.91 ? C7 A1AM9 202 A 1 HETATM 5 C C8 A1AM9 . . . C 2 32.001 22.94 16.38 0.74 30.67 ? C8 A1AM9 202 A 1 HETATM 6 C C10 A1AM9 . . . C 2 27.624 21.523 20.051 0.74 33.19 ? C10 A1AM9 202 A 1 HETATM 7 N N A1AM9 . . . C 2 26.329 21.813 19.901 0.74 34.42 ? N A1AM9 202 A 1 HETATM 8 C C A1AM9 . . . C 2 25.26 21.168 20.657 0.74 35.77 ? C A1AM9 202 A 1 HETATM 9 O O A1AM9 . . . C 2 29.677 22.225 19.06 0.74 33.29 ? O A1AM9 202 A 1 HETATM 10 C C1 A1AM9 . . . C 2 26.077 22.822 18.881 0.74 33.86 ? C1 A1AM9 202 A 1 HETATM 11 C C2 A1AM9 . . . C 2 27.459 23.074 18.281 0.74 33.83 ? C2 A1AM9 202 A 1 HETATM 12 C C3 A1AM9 . . . C 2 28.314 21.909 18.757 0.74 33.61 ? C3 A1AM9 202 A 1 HETATM 13 C C9 A1AM9 . . . C 2 31.14 22.217 17.17 0.74 31.1 ? C9 A1AM9 202 A 1 HETATM 14 F F A1AM9 . . . C 2 32.763 22.265 15.492 0.74 33.83 ? F A1AM9 202 A 1 HETATM 15 O O1 A1AM9 . . . C 2 28.134 21.047 21.043 0.74 33.87 ? O1 A1AM9 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #