data_7H42 # _model_server_result.job_id 7mQosrw_UnQJsZ2Q8qJBgw _model_server_result.datetime_utc '2024-11-04 23:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 7H42 # _exptl.entry_id 7H42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.39 _cell.angle_gamma 90 _cell.entry_id 7H42 _cell.length_a 86.611 _cell.length_b 56.422 _cell.length_c 32.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H42 _atom_sites.fract_transf_matrix[1][1] 0.011546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001088 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WHD A 1 201 147 WHD LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 -1 DMS DMS . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 4 DMS A 1 206 3 DMS DMS . H 5 SO4 A 1 207 1 SO4 SO4 . I 6 HOH A 1 301 137 HOH HOH . I 6 HOH A 2 302 227 HOH HOH . I 6 HOH A 3 303 3 HOH HOH . I 6 HOH A 4 304 250 HOH HOH . I 6 HOH A 5 305 215 HOH HOH . I 6 HOH A 6 306 245 HOH HOH . I 6 HOH A 7 307 248 HOH HOH . I 6 HOH A 8 308 108 HOH HOH . I 6 HOH A 9 309 238 HOH HOH . I 6 HOH A 10 310 186 HOH HOH . I 6 HOH A 11 311 116 HOH HOH . I 6 HOH A 12 312 72 HOH HOH . I 6 HOH A 13 313 181 HOH HOH . I 6 HOH A 14 314 133 HOH HOH . I 6 HOH A 15 315 34 HOH HOH . I 6 HOH A 16 316 148 HOH HOH . I 6 HOH A 17 317 46 HOH HOH . I 6 HOH A 18 318 247 HOH HOH . I 6 HOH A 19 319 59 HOH HOH . I 6 HOH A 20 320 217 HOH HOH . I 6 HOH A 21 321 4 HOH HOH . I 6 HOH A 22 322 94 HOH HOH . I 6 HOH A 23 323 77 HOH HOH . I 6 HOH A 24 324 234 HOH HOH . I 6 HOH A 25 325 104 HOH HOH . I 6 HOH A 26 326 30 HOH HOH . I 6 HOH A 27 327 249 HOH HOH . I 6 HOH A 28 328 173 HOH HOH . I 6 HOH A 29 329 68 HOH HOH . I 6 HOH A 30 330 36 HOH HOH . I 6 HOH A 31 331 124 HOH HOH . I 6 HOH A 32 332 152 HOH HOH . I 6 HOH A 33 333 119 HOH HOH . I 6 HOH A 34 334 79 HOH HOH . I 6 HOH A 35 335 219 HOH HOH . I 6 HOH A 36 336 180 HOH HOH . I 6 HOH A 37 337 191 HOH HOH . I 6 HOH A 38 338 107 HOH HOH . I 6 HOH A 39 339 16 HOH HOH . I 6 HOH A 40 340 211 HOH HOH . I 6 HOH A 41 341 57 HOH HOH . I 6 HOH A 42 342 60 HOH HOH . I 6 HOH A 43 343 88 HOH HOH . I 6 HOH A 44 344 121 HOH HOH . I 6 HOH A 45 345 161 HOH HOH . I 6 HOH A 46 346 193 HOH HOH . I 6 HOH A 47 347 109 HOH HOH . I 6 HOH A 48 348 29 HOH HOH . I 6 HOH A 49 349 103 HOH HOH . I 6 HOH A 50 350 138 HOH HOH . I 6 HOH A 51 351 24 HOH HOH . I 6 HOH A 52 352 183 HOH HOH . I 6 HOH A 53 353 21 HOH HOH . I 6 HOH A 54 354 47 HOH HOH . I 6 HOH A 55 355 2 HOH HOH . I 6 HOH A 56 356 13 HOH HOH . I 6 HOH A 57 357 37 HOH HOH . I 6 HOH A 58 358 182 HOH HOH . I 6 HOH A 59 359 81 HOH HOH . I 6 HOH A 60 360 111 HOH HOH . I 6 HOH A 61 361 97 HOH HOH . I 6 HOH A 62 362 205 HOH HOH . I 6 HOH A 63 363 53 HOH HOH . I 6 HOH A 64 364 52 HOH HOH . I 6 HOH A 65 365 33 HOH HOH . I 6 HOH A 66 366 71 HOH HOH . I 6 HOH A 67 367 179 HOH HOH . I 6 HOH A 68 368 178 HOH HOH . I 6 HOH A 69 369 67 HOH HOH . I 6 HOH A 70 370 147 HOH HOH . I 6 HOH A 71 371 50 HOH HOH . I 6 HOH A 72 372 168 HOH HOH . I 6 HOH A 73 373 84 HOH HOH . I 6 HOH A 74 374 7 HOH HOH . I 6 HOH A 75 375 167 HOH HOH . I 6 HOH A 76 376 39 HOH HOH . I 6 HOH A 77 377 195 HOH HOH . I 6 HOH A 78 378 70 HOH HOH . I 6 HOH A 79 379 43 HOH HOH . I 6 HOH A 80 380 35 HOH HOH . I 6 HOH A 81 381 216 HOH HOH . I 6 HOH A 82 382 28 HOH HOH . I 6 HOH A 83 383 19 HOH HOH . I 6 HOH A 84 384 90 HOH HOH . I 6 HOH A 85 385 78 HOH HOH . I 6 HOH A 86 386 82 HOH HOH . I 6 HOH A 87 387 42 HOH HOH . I 6 HOH A 88 388 45 HOH HOH . I 6 HOH A 89 389 25 HOH HOH . I 6 HOH A 90 390 12 HOH HOH . I 6 HOH A 91 391 210 HOH HOH . I 6 HOH A 92 392 91 HOH HOH . I 6 HOH A 93 393 27 HOH HOH . I 6 HOH A 94 394 113 HOH HOH . I 6 HOH A 95 395 49 HOH HOH . I 6 HOH A 96 396 63 HOH HOH . I 6 HOH A 97 397 15 HOH HOH . I 6 HOH A 98 398 26 HOH HOH . I 6 HOH A 99 399 62 HOH HOH . I 6 HOH A 100 400 144 HOH HOH . I 6 HOH A 101 401 48 HOH HOH . I 6 HOH A 102 402 9 HOH HOH . I 6 HOH A 103 403 110 HOH HOH . I 6 HOH A 104 404 55 HOH HOH . I 6 HOH A 105 405 14 HOH HOH . I 6 HOH A 106 406 169 HOH HOH . I 6 HOH A 107 407 8 HOH HOH . I 6 HOH A 108 408 106 HOH HOH . I 6 HOH A 109 409 177 HOH HOH . I 6 HOH A 110 410 95 HOH HOH . I 6 HOH A 111 411 96 HOH HOH . I 6 HOH A 112 412 17 HOH HOH . I 6 HOH A 113 413 54 HOH HOH . I 6 HOH A 114 414 100 HOH HOH . I 6 HOH A 115 415 66 HOH HOH . I 6 HOH A 116 416 141 HOH HOH . I 6 HOH A 117 417 41 HOH HOH . I 6 HOH A 118 418 174 HOH HOH . I 6 HOH A 119 419 105 HOH HOH . I 6 HOH A 120 420 18 HOH HOH . I 6 HOH A 121 421 204 HOH HOH . I 6 HOH A 122 422 40 HOH HOH . I 6 HOH A 123 423 20 HOH HOH . I 6 HOH A 124 424 155 HOH HOH . I 6 HOH A 125 425 198 HOH HOH . I 6 HOH A 126 426 192 HOH HOH . I 6 HOH A 127 427 170 HOH HOH . I 6 HOH A 128 428 11 HOH HOH . I 6 HOH A 129 429 112 HOH HOH . I 6 HOH A 130 430 212 HOH HOH . I 6 HOH A 131 431 120 HOH HOH . I 6 HOH A 132 432 220 HOH HOH . I 6 HOH A 133 433 102 HOH HOH . I 6 HOH A 134 434 93 HOH HOH . I 6 HOH A 135 435 5 HOH HOH . I 6 HOH A 136 436 80 HOH HOH . I 6 HOH A 137 437 146 HOH HOH . I 6 HOH A 138 438 126 HOH HOH . I 6 HOH A 139 439 176 HOH HOH . I 6 HOH A 140 440 38 HOH HOH . I 6 HOH A 141 441 214 HOH HOH . I 6 HOH A 142 442 64 HOH HOH . I 6 HOH A 143 443 31 HOH HOH . I 6 HOH A 144 444 246 HOH HOH . I 6 HOH A 145 445 69 HOH HOH . I 6 HOH A 146 446 203 HOH HOH . I 6 HOH A 147 447 51 HOH HOH . I 6 HOH A 148 448 156 HOH HOH . I 6 HOH A 149 449 58 HOH HOH . I 6 HOH A 150 450 76 HOH HOH . I 6 HOH A 151 451 23 HOH HOH . I 6 HOH A 152 452 89 HOH HOH . I 6 HOH A 153 453 10 HOH HOH . I 6 HOH A 154 454 118 HOH HOH . I 6 HOH A 155 455 135 HOH HOH . I 6 HOH A 156 456 237 HOH HOH . I 6 HOH A 157 457 123 HOH HOH . I 6 HOH A 158 458 218 HOH HOH . I 6 HOH A 159 459 6 HOH HOH . I 6 HOH A 160 460 132 HOH HOH . I 6 HOH A 161 461 136 HOH HOH . I 6 HOH A 162 462 171 HOH HOH . I 6 HOH A 163 463 224 HOH HOH . I 6 HOH A 164 464 61 HOH HOH . I 6 HOH A 165 465 101 HOH HOH . I 6 HOH A 166 466 230 HOH HOH . I 6 HOH A 167 467 128 HOH HOH . I 6 HOH A 168 468 200 HOH HOH . I 6 HOH A 169 469 197 HOH HOH . I 6 HOH A 170 470 74 HOH HOH . I 6 HOH A 171 471 159 HOH HOH . I 6 HOH A 172 472 213 HOH HOH . I 6 HOH A 173 473 117 HOH HOH . I 6 HOH A 174 474 22 HOH HOH . I 6 HOH A 175 475 154 HOH HOH . I 6 HOH A 176 476 98 HOH HOH . I 6 HOH A 177 477 157 HOH HOH . I 6 HOH A 178 478 233 HOH HOH . I 6 HOH A 179 479 158 HOH HOH . I 6 HOH A 180 480 87 HOH HOH . I 6 HOH A 181 481 231 HOH HOH . I 6 HOH A 182 482 175 HOH HOH . I 6 HOH A 183 483 65 HOH HOH . I 6 HOH A 184 484 232 HOH HOH . I 6 HOH A 185 485 226 HOH HOH . I 6 HOH A 186 486 99 HOH HOH . I 6 HOH A 187 487 207 HOH HOH . I 6 HOH A 188 488 225 HOH HOH . I 6 HOH A 189 489 228 HOH HOH . I 6 HOH A 190 490 151 HOH HOH . I 6 HOH A 191 491 201 HOH HOH . I 6 HOH A 192 492 162 HOH HOH . I 6 HOH A 193 493 134 HOH HOH . I 6 HOH A 194 494 239 HOH HOH . I 6 HOH A 195 495 83 HOH HOH . I 6 HOH A 196 496 190 HOH HOH . I 6 HOH A 197 497 127 HOH HOH . I 6 HOH A 198 498 240 HOH HOH . I 6 HOH A 199 499 140 HOH HOH . I 6 HOH A 200 500 172 HOH HOH . I 6 HOH A 201 501 86 HOH HOH . I 6 HOH A 202 502 163 HOH HOH . I 6 HOH A 203 503 189 HOH HOH . I 6 HOH A 204 504 223 HOH HOH . I 6 HOH A 205 505 229 HOH HOH . I 6 HOH A 206 506 122 HOH HOH . I 6 HOH A 207 507 85 HOH HOH . I 6 HOH A 208 508 209 HOH HOH . I 6 HOH A 209 509 32 HOH HOH . I 6 HOH A 210 510 185 HOH HOH . I 6 HOH A 211 511 202 HOH HOH . I 6 HOH A 212 512 73 HOH HOH . I 6 HOH A 213 513 114 HOH HOH . I 6 HOH A 214 514 221 HOH HOH . I 6 HOH A 215 515 199 HOH HOH . I 6 HOH A 216 516 187 HOH HOH . I 6 HOH A 217 517 236 HOH HOH . I 6 HOH A 218 518 56 HOH HOH . I 6 HOH A 219 519 129 HOH HOH . I 6 HOH A 220 520 165 HOH HOH . I 6 HOH A 221 521 235 HOH HOH . I 6 HOH A 222 522 208 HOH HOH . I 6 HOH A 223 523 75 HOH HOH . I 6 HOH A 224 524 142 HOH HOH . I 6 HOH A 225 525 241 HOH HOH . I 6 HOH A 226 526 153 HOH HOH . I 6 HOH A 227 527 206 HOH HOH . I 6 HOH A 228 528 222 HOH HOH . I 6 HOH A 229 529 92 HOH HOH . I 6 HOH A 230 530 243 HOH HOH . I 6 HOH A 231 531 125 HOH HOH . I 6 HOH A 232 532 242 HOH HOH . I 6 HOH A 233 533 160 HOH HOH . I 6 HOH A 234 534 164 HOH HOH . I 6 HOH A 235 535 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 4 -0.483 -1.226 23.104 1 44.89 ? S DMS 206 A 1 HETATM 2 O O DMS . . . G 4 -0.232 -0.039 23.958 1 36.6 ? O DMS 206 A 1 HETATM 3 C C1 DMS . . . G 4 0.473 -2.552 23.795 1 40.52 ? C1 DMS 206 A 1 HETATM 4 C C2 DMS . . . G 4 -2.114 -1.826 23.521 1 40.99 ? C2 DMS 206 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #