data_7H48 # _model_server_result.job_id 2hlqzaBnbUhtwzqJxl8IPA _model_server_result.datetime_utc '2024-11-01 01:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 7H48 # _exptl.entry_id 7H48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.99 _cell.angle_gamma 90 _cell.entry_id 7H48 _cell.length_a 85.834 _cell.length_b 56.281 _cell.length_c 32.379 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H48 _atom_sites.fract_transf_matrix[1][1] 0.01165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RZJ A 1 201 147 RZJ LIG . C 3 ZN A 1 202 1 ZN ZN . D 4 DMS A 1 203 -1 DMS DMS . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 4 DMS A 1 206 3 DMS DMS . H 4 DMS A 1 207 6 DMS DMS . I 4 DMS A 1 208 7 DMS DMS . J 5 SO4 A 1 209 1 SO4 SO4 . K 6 HOH A 1 301 238 HOH HOH . K 6 HOH A 2 302 34 HOH HOH . K 6 HOH A 3 303 30 HOH HOH . K 6 HOH A 4 304 103 HOH HOH . K 6 HOH A 5 305 234 HOH HOH . K 6 HOH A 6 306 70 HOH HOH . K 6 HOH A 7 307 182 HOH HOH . K 6 HOH A 8 308 46 HOH HOH . K 6 HOH A 9 309 77 HOH HOH . K 6 HOH A 10 310 217 HOH HOH . K 6 HOH A 11 311 116 HOH HOH . K 6 HOH A 12 312 4 HOH HOH . K 6 HOH A 13 313 170 HOH HOH . K 6 HOH A 14 314 229 HOH HOH . K 6 HOH A 15 315 108 HOH HOH . K 6 HOH A 16 316 186 HOH HOH . K 6 HOH A 17 317 152 HOH HOH . K 6 HOH A 18 318 216 HOH HOH . K 6 HOH A 19 319 57 HOH HOH . K 6 HOH A 20 320 133 HOH HOH . K 6 HOH A 21 321 41 HOH HOH . K 6 HOH A 22 322 59 HOH HOH . K 6 HOH A 23 323 181 HOH HOH . K 6 HOH A 24 324 16 HOH HOH . K 6 HOH A 25 325 107 HOH HOH . K 6 HOH A 26 326 21 HOH HOH . K 6 HOH A 27 327 109 HOH HOH . K 6 HOH A 28 328 167 HOH HOH . K 6 HOH A 29 329 161 HOH HOH . K 6 HOH A 30 330 183 HOH HOH . K 6 HOH A 31 331 142 HOH HOH . K 6 HOH A 32 332 37 HOH HOH . K 6 HOH A 33 333 68 HOH HOH . K 6 HOH A 34 334 104 HOH HOH . K 6 HOH A 35 335 33 HOH HOH . K 6 HOH A 36 336 94 HOH HOH . K 6 HOH A 37 337 7 HOH HOH . K 6 HOH A 38 338 180 HOH HOH . K 6 HOH A 39 339 147 HOH HOH . K 6 HOH A 40 340 39 HOH HOH . K 6 HOH A 41 341 72 HOH HOH . K 6 HOH A 42 342 5 HOH HOH . K 6 HOH A 43 343 249 HOH HOH . K 6 HOH A 44 344 67 HOH HOH . K 6 HOH A 45 345 82 HOH HOH . K 6 HOH A 46 346 148 HOH HOH . K 6 HOH A 47 347 141 HOH HOH . K 6 HOH A 48 348 144 HOH HOH . K 6 HOH A 49 349 198 HOH HOH . K 6 HOH A 50 350 43 HOH HOH . K 6 HOH A 51 351 226 HOH HOH . K 6 HOH A 52 352 2 HOH HOH . K 6 HOH A 53 353 233 HOH HOH . K 6 HOH A 54 354 126 HOH HOH . K 6 HOH A 55 355 60 HOH HOH . K 6 HOH A 56 356 52 HOH HOH . K 6 HOH A 57 357 250 HOH HOH . K 6 HOH A 58 358 17 HOH HOH . K 6 HOH A 59 359 97 HOH HOH . K 6 HOH A 60 360 28 HOH HOH . K 6 HOH A 61 361 88 HOH HOH . K 6 HOH A 62 362 19 HOH HOH . K 6 HOH A 63 363 27 HOH HOH . K 6 HOH A 64 364 114 HOH HOH . K 6 HOH A 65 365 118 HOH HOH . K 6 HOH A 66 366 29 HOH HOH . K 6 HOH A 67 367 81 HOH HOH . K 6 HOH A 68 368 12 HOH HOH . K 6 HOH A 69 369 25 HOH HOH . K 6 HOH A 70 370 54 HOH HOH . K 6 HOH A 71 371 112 HOH HOH . K 6 HOH A 72 372 119 HOH HOH . K 6 HOH A 73 373 26 HOH HOH . K 6 HOH A 74 374 78 HOH HOH . K 6 HOH A 75 375 24 HOH HOH . K 6 HOH A 76 376 71 HOH HOH . K 6 HOH A 77 377 121 HOH HOH . K 6 HOH A 78 378 50 HOH HOH . K 6 HOH A 79 379 174 HOH HOH . K 6 HOH A 80 380 169 HOH HOH . K 6 HOH A 81 381 220 HOH HOH . K 6 HOH A 82 382 146 HOH HOH . K 6 HOH A 83 383 9 HOH HOH . K 6 HOH A 84 384 84 HOH HOH . K 6 HOH A 85 385 36 HOH HOH . K 6 HOH A 86 386 173 HOH HOH . K 6 HOH A 87 387 111 HOH HOH . K 6 HOH A 88 388 31 HOH HOH . K 6 HOH A 89 389 45 HOH HOH . K 6 HOH A 90 390 100 HOH HOH . K 6 HOH A 91 391 105 HOH HOH . K 6 HOH A 92 392 178 HOH HOH . K 6 HOH A 93 393 40 HOH HOH . K 6 HOH A 94 394 20 HOH HOH . K 6 HOH A 95 395 132 HOH HOH . K 6 HOH A 96 396 120 HOH HOH . K 6 HOH A 97 397 62 HOH HOH . K 6 HOH A 98 398 124 HOH HOH . K 6 HOH A 99 399 15 HOH HOH . K 6 HOH A 100 400 95 HOH HOH . K 6 HOH A 101 401 179 HOH HOH . K 6 HOH A 102 402 214 HOH HOH . K 6 HOH A 103 403 63 HOH HOH . K 6 HOH A 104 404 49 HOH HOH . K 6 HOH A 105 405 42 HOH HOH . K 6 HOH A 106 406 53 HOH HOH . K 6 HOH A 107 407 106 HOH HOH . K 6 HOH A 108 408 191 HOH HOH . K 6 HOH A 109 409 204 HOH HOH . K 6 HOH A 110 410 61 HOH HOH . K 6 HOH A 111 411 47 HOH HOH . K 6 HOH A 112 412 69 HOH HOH . K 6 HOH A 113 413 155 HOH HOH . K 6 HOH A 114 414 55 HOH HOH . K 6 HOH A 115 415 48 HOH HOH . K 6 HOH A 116 416 90 HOH HOH . K 6 HOH A 117 417 18 HOH HOH . K 6 HOH A 118 418 51 HOH HOH . K 6 HOH A 119 419 80 HOH HOH . K 6 HOH A 120 420 66 HOH HOH . K 6 HOH A 121 421 38 HOH HOH . K 6 HOH A 122 422 138 HOH HOH . K 6 HOH A 123 423 58 HOH HOH . K 6 HOH A 124 424 96 HOH HOH . K 6 HOH A 125 425 64 HOH HOH . K 6 HOH A 126 426 177 HOH HOH . K 6 HOH A 127 427 176 HOH HOH . K 6 HOH A 128 428 123 HOH HOH . K 6 HOH A 129 429 113 HOH HOH . K 6 HOH A 130 430 11 HOH HOH . K 6 HOH A 131 431 195 HOH HOH . K 6 HOH A 132 432 203 HOH HOH . K 6 HOH A 133 433 192 HOH HOH . K 6 HOH A 134 434 102 HOH HOH . K 6 HOH A 135 435 91 HOH HOH . K 6 HOH A 136 436 14 HOH HOH . K 6 HOH A 137 437 6 HOH HOH . K 6 HOH A 138 438 23 HOH HOH . K 6 HOH A 139 439 89 HOH HOH . K 6 HOH A 140 440 224 HOH HOH . K 6 HOH A 141 441 10 HOH HOH . K 6 HOH A 142 442 76 HOH HOH . K 6 HOH A 143 443 101 HOH HOH . K 6 HOH A 144 444 159 HOH HOH . K 6 HOH A 145 445 74 HOH HOH . K 6 HOH A 146 446 230 HOH HOH . K 6 HOH A 147 447 65 HOH HOH . K 6 HOH A 148 448 210 HOH HOH . K 6 HOH A 149 449 136 HOH HOH . K 6 HOH A 150 450 158 HOH HOH . K 6 HOH A 151 451 117 HOH HOH . K 6 HOH A 152 452 213 HOH HOH . K 6 HOH A 153 453 212 HOH HOH . K 6 HOH A 154 454 228 HOH HOH . K 6 HOH A 155 455 87 HOH HOH . K 6 HOH A 156 456 175 HOH HOH . K 6 HOH A 157 457 241 HOH HOH . K 6 HOH A 158 458 154 HOH HOH . K 6 HOH A 159 459 98 HOH HOH . K 6 HOH A 160 460 245 HOH HOH . K 6 HOH A 161 461 140 HOH HOH . K 6 HOH A 162 462 151 HOH HOH . K 6 HOH A 163 463 190 HOH HOH . K 6 HOH A 164 464 134 HOH HOH . K 6 HOH A 165 465 99 HOH HOH . K 6 HOH A 166 466 157 HOH HOH . K 6 HOH A 167 467 251 HOH HOH . K 6 HOH A 168 468 231 HOH HOH . K 6 HOH A 169 469 232 HOH HOH . K 6 HOH A 170 470 207 HOH HOH . K 6 HOH A 171 471 127 HOH HOH . K 6 HOH A 172 472 75 HOH HOH . K 6 HOH A 173 473 85 HOH HOH . K 6 HOH A 174 474 86 HOH HOH . K 6 HOH A 175 475 73 HOH HOH . K 6 HOH A 176 476 122 HOH HOH . K 6 HOH A 177 477 83 HOH HOH . K 6 HOH A 178 478 223 HOH HOH . K 6 HOH A 179 479 202 HOH HOH . K 6 HOH A 180 480 129 HOH HOH . K 6 HOH A 181 481 206 HOH HOH . K 6 HOH A 182 482 222 HOH HOH . K 6 HOH A 183 483 56 HOH HOH . K 6 HOH A 184 484 209 HOH HOH . K 6 HOH A 185 485 162 HOH HOH . K 6 HOH A 186 486 208 HOH HOH . K 6 HOH A 187 487 236 HOH HOH . K 6 HOH A 188 488 221 HOH HOH . K 6 HOH A 189 489 153 HOH HOH . K 6 HOH A 190 490 165 HOH HOH . K 6 HOH A 191 491 199 HOH HOH . K 6 HOH A 192 492 92 HOH HOH . K 6 HOH A 193 493 125 HOH HOH . K 6 HOH A 194 494 252 HOH HOH . K 6 HOH A 195 495 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 4 19.359 -3.243 24.137 1 77.07 ? S DMS 205 A 1 HETATM 2 O O DMS . . . F 4 18.775 -4.298 25.034 1 75.93 ? O DMS 205 A 1 HETATM 3 C C1 DMS . . . F 4 20.787 -3.981 23.375 1 78.46 ? C1 DMS 205 A 1 HETATM 4 C C2 DMS . . . F 4 18.327 -3.205 22.695 1 71.29 ? C2 DMS 205 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #