data_7H4J # _model_server_result.job_id dy0ck2L2pZEclVgHOu25NA _model_server_result.datetime_utc '2024-11-22 22:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7H4J # _exptl.entry_id 7H4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.07 _cell.angle_gamma 90 _cell.entry_id 7H4J _cell.length_a 72.729 _cell.length_b 60.911 _cell.length_c 32.396 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H4J _atom_sites.fract_transf_matrix[1][1] 0.01375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000737 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TE0 A 1 201 147 TE0 LIG . C 2 TE0 A 1 202 201 TE0 LIG . D 3 ZN A 1 203 1 ZN ZN . E 4 DMS A 1 204 3 DMS DMS . F 5 HOH A 1 301 20 HOH HOH . F 5 HOH A 2 302 31 HOH HOH . F 5 HOH A 3 303 25 HOH HOH . F 5 HOH A 4 304 30 HOH HOH . F 5 HOH A 5 305 39 HOH HOH . F 5 HOH A 6 306 34 HOH HOH . F 5 HOH A 7 307 7 HOH HOH . F 5 HOH A 8 308 33 HOH HOH . F 5 HOH A 9 309 11 HOH HOH . F 5 HOH A 10 310 29 HOH HOH . F 5 HOH A 11 311 45 HOH HOH . F 5 HOH A 12 312 8 HOH HOH . F 5 HOH A 13 313 13 HOH HOH . F 5 HOH A 14 314 55 HOH HOH . F 5 HOH A 15 315 19 HOH HOH . F 5 HOH A 16 316 9 HOH HOH . F 5 HOH A 17 317 40 HOH HOH . F 5 HOH A 18 318 60 HOH HOH . F 5 HOH A 19 319 56 HOH HOH . F 5 HOH A 20 320 41 HOH HOH . F 5 HOH A 21 321 3 HOH HOH . F 5 HOH A 22 322 53 HOH HOH . F 5 HOH A 23 323 32 HOH HOH . F 5 HOH A 24 324 15 HOH HOH . F 5 HOH A 25 325 57 HOH HOH . F 5 HOH A 26 326 14 HOH HOH . F 5 HOH A 27 327 47 HOH HOH . F 5 HOH A 28 328 51 HOH HOH . F 5 HOH A 29 329 1 HOH HOH . F 5 HOH A 30 330 10 HOH HOH . F 5 HOH A 31 331 26 HOH HOH . F 5 HOH A 32 332 4 HOH HOH . F 5 HOH A 33 333 6 HOH HOH . F 5 HOH A 34 334 35 HOH HOH . F 5 HOH A 35 335 18 HOH HOH . F 5 HOH A 36 336 54 HOH HOH . F 5 HOH A 37 337 21 HOH HOH . F 5 HOH A 38 338 59 HOH HOH . F 5 HOH A 39 339 17 HOH HOH . F 5 HOH A 40 340 36 HOH HOH . F 5 HOH A 41 341 28 HOH HOH . F 5 HOH A 42 342 16 HOH HOH . F 5 HOH A 43 343 2 HOH HOH . F 5 HOH A 44 344 46 HOH HOH . F 5 HOH A 45 345 22 HOH HOH . F 5 HOH A 46 346 12 HOH HOH . F 5 HOH A 47 347 48 HOH HOH . F 5 HOH A 48 348 52 HOH HOH . F 5 HOH A 49 349 50 HOH HOH . F 5 HOH A 50 350 24 HOH HOH . F 5 HOH A 51 351 49 HOH HOH . F 5 HOH A 52 352 23 HOH HOH . F 5 HOH A 53 353 38 HOH HOH . F 5 HOH A 54 354 58 HOH HOH . F 5 HOH A 55 355 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 0.112 -1.33 23.262 1 71.01 ? S DMS 204 A 1 HETATM 2 O O DMS . . . E 4 0.227 0.153 23.581 1 51.76 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . E 4 0.539 -2.211 24.756 1 65.83 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . E 4 -1.629 -1.74 23.22 1 59.29 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #