data_7H4X # _model_server_result.job_id V2NSq5pxJ0j13kzJXqxw0g _model_server_result.datetime_utc '2024-11-29 01:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7H4X # _exptl.entry_id 7H4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.261 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (3R)-3-[(4-fluorophenyl)methyl]piperidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 7H4X _cell.length_a 72.783 _cell.length_b 60.484 _cell.length_c 32.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A SG CYS 58 A CYS 58 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 A SG CYS 116 A CYS 116 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A ND1 HIS 118 A HIS 118 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C12 H16 F N' _chem_comp.formula_weight 193.261 _chem_comp.id A1ANG _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-[(4-fluorophenyl)methyl]piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C F A1ANG sing 1 n n C C1 A1ANG sing 2 n y C1 C2 A1ANG doub 3 n y C2 C3 A1ANG sing 4 n y C4 C3 A1ANG sing 5 n n C5 C4 A1ANG sing 6 n n C5 C6 A1ANG sing 7 n n C6 C7 A1ANG sing 8 n n C7 C8 A1ANG sing 9 n n C8 N A1ANG sing 10 n n N C9 A1ANG sing 11 n n C9 C5 A1ANG sing 12 n n C3 C10 A1ANG doub 13 n y C10 C11 A1ANG sing 14 n y C11 C A1ANG doub 15 n y C4 H2 A1ANG sing 16 n n C4 H3 A1ANG sing 17 n n C5 H4 A1ANG sing 18 n n C6 H5 A1ANG sing 19 n n C6 H6 A1ANG sing 20 n n C7 H8 A1ANG sing 21 n n C7 H7 A1ANG sing 22 n n C8 H10 A1ANG sing 23 n n C8 H9 A1ANG sing 24 n n C10 H14 A1ANG sing 25 n n N H11 A1ANG sing 26 n n C1 H A1ANG sing 27 n n C11 H15 A1ANG sing 28 n n C2 H1 A1ANG sing 29 n n C9 H13 A1ANG sing 30 n n C9 H12 A1ANG sing 31 n n # _atom_sites.entry_id 7H4X _atom_sites.fract_transf_matrix[1][1] 0.013739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000705 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ANG A 1 201 147 A1ANG LIG . C 2 A1ANG A 1 202 201 A1ANG LIG . D 3 ZN A 1 203 1 ZN ZN . E 4 DMS A 1 204 0 DMS DMS . F 4 DMS A 1 205 1 DMS DMS . G 4 DMS A 1 206 3 DMS DMS . H 5 SO4 A 1 207 1 SO4 SO4 . I 6 HOH A 1 301 20 HOH HOH . I 6 HOH A 2 302 5 HOH HOH . I 6 HOH A 3 303 15 HOH HOH . I 6 HOH A 4 304 29 HOH HOH . I 6 HOH A 5 305 18 HOH HOH . I 6 HOH A 6 306 11 HOH HOH . I 6 HOH A 7 307 34 HOH HOH . I 6 HOH A 8 308 7 HOH HOH . I 6 HOH A 9 309 25 HOH HOH . I 6 HOH A 10 310 32 HOH HOH . I 6 HOH A 11 311 4 HOH HOH . I 6 HOH A 12 312 45 HOH HOH . I 6 HOH A 13 313 48 HOH HOH . I 6 HOH A 14 314 1 HOH HOH . I 6 HOH A 15 315 21 HOH HOH . I 6 HOH A 16 316 8 HOH HOH . I 6 HOH A 17 317 24 HOH HOH . I 6 HOH A 18 318 6 HOH HOH . I 6 HOH A 19 319 9 HOH HOH . I 6 HOH A 20 320 41 HOH HOH . I 6 HOH A 21 321 33 HOH HOH . I 6 HOH A 22 322 46 HOH HOH . I 6 HOH A 23 323 42 HOH HOH . I 6 HOH A 24 324 51 HOH HOH . I 6 HOH A 25 325 16 HOH HOH . I 6 HOH A 26 326 27 HOH HOH . I 6 HOH A 27 327 19 HOH HOH . I 6 HOH A 28 328 30 HOH HOH . I 6 HOH A 29 329 35 HOH HOH . I 6 HOH A 30 330 49 HOH HOH . I 6 HOH A 31 331 17 HOH HOH . I 6 HOH A 32 332 10 HOH HOH . I 6 HOH A 33 333 31 HOH HOH . I 6 HOH A 34 334 39 HOH HOH . I 6 HOH A 35 335 36 HOH HOH . I 6 HOH A 36 336 26 HOH HOH . I 6 HOH A 37 337 28 HOH HOH . I 6 HOH A 38 338 3 HOH HOH . I 6 HOH A 39 339 40 HOH HOH . I 6 HOH A 40 340 2 HOH HOH . I 6 HOH A 41 341 14 HOH HOH . I 6 HOH A 42 342 22 HOH HOH . I 6 HOH A 43 343 38 HOH HOH . I 6 HOH A 44 344 52 HOH HOH . I 6 HOH A 45 345 47 HOH HOH . I 6 HOH A 46 346 23 HOH HOH . I 6 HOH A 47 347 50 HOH HOH . I 6 HOH A 48 348 43 HOH HOH . I 6 HOH A 49 349 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1ANG . . . B 2 28.341 22.352 17.943 0.77 48.61 ? C4 A1ANG 201 A 1 HETATM 2 C C5 A1ANG . . . B 2 27.654 22.306 19.314 0.77 50.22 ? C5 A1ANG 201 A 1 HETATM 3 C C6 A1ANG . . . B 2 26.277 21.641 19.215 0.77 49.14 ? C6 A1ANG 201 A 1 HETATM 4 C C7 A1ANG . . . B 2 25.403 21.849 20.448 0.77 49.66 ? C7 A1ANG 201 A 1 HETATM 5 C C8 A1ANG . . . B 2 25.278 23.294 20.757 0.77 49.45 ? C8 A1ANG 201 A 1 HETATM 6 C C10 A1ANG . . . B 2 30.774 21.998 17.412 0.77 50.58 ? C10 A1ANG 201 A 1 HETATM 7 N N A1ANG . . . B 2 26.608 23.79 21.058 0.77 50.38 ? N A1ANG 201 A 1 HETATM 8 C C A1ANG . . . B 2 32.295 23.805 17.378 0.77 54.13 ? C A1ANG 201 A 1 HETATM 9 C C1 A1ANG . . . B 2 31.362 24.654 17.897 0.77 51.22 ? C1 A1ANG 201 A 1 HETATM 10 C C11 A1ANG . . . B 2 32.042 22.482 17.138 0.77 52.67 ? C11 A1ANG 201 A 1 HETATM 11 C C2 A1ANG . . . B 2 30.095 24.159 18.15 0.77 50.75 ? C2 A1ANG 201 A 1 HETATM 12 C C3 A1ANG . . . B 2 29.774 22.83 17.896 0.77 50.06 ? C3 A1ANG 201 A 1 HETATM 13 C C9 A1ANG . . . B 2 27.489 23.712 19.891 0.77 50.82 ? C9 A1ANG 201 A 1 HETATM 14 F F A1ANG . . . B 2 33.511 24.311 17.034 0.77 59.4 ? F A1ANG 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #