data_7H58 # _model_server_result.job_id zm9af6bvjeFLCx0HjOfHng _model_server_result.datetime_utc '2024-11-24 06:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 7H58 # _exptl.entry_id 7H58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.48 _cell.angle_gamma 90 _cell.entry_id 7H58 _cell.length_a 45.178 _cell.length_b 73.482 _cell.length_c 51.999 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H58 _atom_sites.fract_transf_matrix[1][1] 0.022135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007398 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 501 501 DMS DMS . C 2 DMS A 1 502 601 DMS DMS . D 2 DMS A 1 503 701 DMS DMS . E 2 DMS A 1 504 702 DMS DMS . F 2 DMS A 1 505 801 DMS DMS . G 2 DMS A 1 506 901 DMS DMS . H 2 DMS A 1 507 1101 DMS DMS . I 2 DMS A 1 508 1201 DMS DMS . J 2 DMS A 1 509 1601 DMS DMS . K 2 DMS A 1 510 1701 DMS DMS . L 2 DMS A 1 511 1801 DMS DMS . M 2 DMS A 1 512 1901 DMS DMS . N 2 DMS A 1 513 2001 DMS DMS . O 2 DMS A 1 514 2101 DMS DMS . P 2 DMS A 1 515 2201 DMS DMS . Q 2 DMS A 1 516 2301 DMS DMS . R 2 DMS A 1 517 2401 DMS DMS . S 2 DMS A 1 518 2501 DMS DMS . T 3 HOH A 1 601 13 HOH HOH . T 3 HOH A 2 602 40 HOH HOH . T 3 HOH A 3 603 70 HOH HOH . T 3 HOH A 4 604 37 HOH HOH . T 3 HOH A 5 605 25 HOH HOH . T 3 HOH A 6 606 11 HOH HOH . T 3 HOH A 7 607 4 HOH HOH . T 3 HOH A 8 608 63 HOH HOH . T 3 HOH A 9 609 58 HOH HOH . T 3 HOH A 10 610 31 HOH HOH . T 3 HOH A 11 611 6 HOH HOH . T 3 HOH A 12 612 55 HOH HOH . T 3 HOH A 13 613 2 HOH HOH . T 3 HOH A 14 614 8 HOH HOH . T 3 HOH A 15 615 12 HOH HOH . T 3 HOH A 16 616 45 HOH HOH . T 3 HOH A 17 617 35 HOH HOH . T 3 HOH A 18 618 43 HOH HOH . T 3 HOH A 19 619 54 HOH HOH . T 3 HOH A 20 620 20 HOH HOH . T 3 HOH A 21 621 18 HOH HOH . T 3 HOH A 22 622 60 HOH HOH . T 3 HOH A 23 623 51 HOH HOH . T 3 HOH A 24 624 74 HOH HOH . T 3 HOH A 25 625 46 HOH HOH . T 3 HOH A 26 626 53 HOH HOH . T 3 HOH A 27 627 15 HOH HOH . T 3 HOH A 28 628 10 HOH HOH . T 3 HOH A 29 629 57 HOH HOH . T 3 HOH A 30 630 77 HOH HOH . T 3 HOH A 31 631 21 HOH HOH . T 3 HOH A 32 632 9 HOH HOH . T 3 HOH A 33 633 65 HOH HOH . T 3 HOH A 34 634 1 HOH HOH . T 3 HOH A 35 635 23 HOH HOH . T 3 HOH A 36 636 49 HOH HOH . T 3 HOH A 37 637 5 HOH HOH . T 3 HOH A 38 638 26 HOH HOH . T 3 HOH A 39 639 41 HOH HOH . T 3 HOH A 40 640 7 HOH HOH . T 3 HOH A 41 641 34 HOH HOH . T 3 HOH A 42 642 50 HOH HOH . T 3 HOH A 43 643 3 HOH HOH . T 3 HOH A 44 644 86 HOH HOH . T 3 HOH A 45 645 33 HOH HOH . T 3 HOH A 46 646 29 HOH HOH . T 3 HOH A 47 647 48 HOH HOH . T 3 HOH A 48 648 39 HOH HOH . T 3 HOH A 49 649 28 HOH HOH . T 3 HOH A 50 650 56 HOH HOH . T 3 HOH A 51 651 24 HOH HOH . T 3 HOH A 52 652 38 HOH HOH . T 3 HOH A 53 653 27 HOH HOH . T 3 HOH A 54 654 22 HOH HOH . T 3 HOH A 55 655 69 HOH HOH . T 3 HOH A 56 656 17 HOH HOH . T 3 HOH A 57 657 68 HOH HOH . T 3 HOH A 58 658 47 HOH HOH . T 3 HOH A 59 659 82 HOH HOH . T 3 HOH A 60 660 19 HOH HOH . T 3 HOH A 61 661 73 HOH HOH . T 3 HOH A 62 662 84 HOH HOH . T 3 HOH A 63 663 76 HOH HOH . T 3 HOH A 64 664 52 HOH HOH . T 3 HOH A 65 665 32 HOH HOH . T 3 HOH A 66 666 44 HOH HOH . T 3 HOH A 67 667 36 HOH HOH . T 3 HOH A 68 668 16 HOH HOH . T 3 HOH A 69 669 59 HOH HOH . T 3 HOH A 70 670 71 HOH HOH . T 3 HOH A 71 671 78 HOH HOH . T 3 HOH A 72 672 64 HOH HOH . T 3 HOH A 73 673 75 HOH HOH . T 3 HOH A 74 674 14 HOH HOH . T 3 HOH A 75 675 30 HOH HOH . T 3 HOH A 76 676 85 HOH HOH . T 3 HOH A 77 677 42 HOH HOH . T 3 HOH A 78 678 79 HOH HOH . T 3 HOH A 79 679 72 HOH HOH . T 3 HOH A 80 680 67 HOH HOH . T 3 HOH A 81 681 80 HOH HOH . T 3 HOH A 82 682 66 HOH HOH . T 3 HOH A 83 683 61 HOH HOH . T 3 HOH A 84 684 83 HOH HOH . T 3 HOH A 85 685 62 HOH HOH . T 3 HOH A 86 686 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . L 2 9.734 -22.791 20.288 1 107.1 ? S DMS 511 A 1 HETATM 2 O O DMS . . . L 2 8.345 -22.476 20.629 1 107.05 ? O DMS 511 A 1 HETATM 3 C C1 DMS . . . L 2 10.766 -22.035 21.577 1 107.17 ? C1 DMS 511 A 1 HETATM 4 C C2 DMS . . . L 2 9.994 -24.531 20.748 1 107.04 ? C2 DMS 511 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #