data_7H5B # _model_server_result.job_id F2cpmXC1LmAfWOgIehQKQg _model_server_result.datetime_utc '2024-11-24 05:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":415}' # _entry.id 7H5B # _exptl.entry_id 7H5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.86 _cell.angle_gamma 90 _cell.entry_id 7H5B _cell.length_a 46.03 _cell.length_b 74.28 _cell.length_c 54 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.04 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H5B _atom_sites.fract_transf_matrix[1][1] 0.021725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007847 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 402 DMS DMS . C 3 U1Q A 1 402 403 U1Q LIG . D 2 DMS A 1 403 501 DMS DMS . E 2 DMS A 1 404 601 DMS DMS . F 2 DMS A 1 405 701 DMS DMS . G 2 DMS A 1 406 702 DMS DMS . H 2 DMS A 1 407 801 DMS DMS . I 2 DMS A 1 408 901 DMS DMS . J 2 DMS A 1 409 1101 DMS DMS . K 2 DMS A 1 410 1201 DMS DMS . L 2 DMS A 1 411 1301 DMS DMS . M 2 DMS A 1 412 1401 DMS DMS . N 2 DMS A 1 413 1501 DMS DMS . O 2 DMS A 1 414 1601 DMS DMS . P 2 DMS A 1 415 1701 DMS DMS . Q 2 DMS A 1 416 1901 DMS DMS . R 2 DMS A 1 417 2001 DMS DMS . S 2 DMS A 1 418 2101 DMS DMS . T 2 DMS A 1 419 2201 DMS DMS . U 4 HOH A 1 501 40 HOH HOH . U 4 HOH A 2 502 149 HOH HOH . U 4 HOH A 3 503 25 HOH HOH . U 4 HOH A 4 504 61 HOH HOH . U 4 HOH A 5 505 5 HOH HOH . U 4 HOH A 6 506 27 HOH HOH . U 4 HOH A 7 507 37 HOH HOH . U 4 HOH A 8 508 38 HOH HOH . U 4 HOH A 9 509 123 HOH HOH . U 4 HOH A 10 510 50 HOH HOH . U 4 HOH A 11 511 136 HOH HOH . U 4 HOH A 12 512 42 HOH HOH . U 4 HOH A 13 513 7 HOH HOH . U 4 HOH A 14 514 142 HOH HOH . U 4 HOH A 15 515 59 HOH HOH . U 4 HOH A 16 516 39 HOH HOH . U 4 HOH A 17 517 9 HOH HOH . U 4 HOH A 18 518 33 HOH HOH . U 4 HOH A 19 519 45 HOH HOH . U 4 HOH A 20 520 62 HOH HOH . U 4 HOH A 21 521 84 HOH HOH . U 4 HOH A 22 522 31 HOH HOH . U 4 HOH A 23 523 41 HOH HOH . U 4 HOH A 24 524 99 HOH HOH . U 4 HOH A 25 525 105 HOH HOH . U 4 HOH A 26 526 140 HOH HOH . U 4 HOH A 27 527 48 HOH HOH . U 4 HOH A 28 528 46 HOH HOH . U 4 HOH A 29 529 13 HOH HOH . U 4 HOH A 30 530 20 HOH HOH . U 4 HOH A 31 531 57 HOH HOH . U 4 HOH A 32 532 98 HOH HOH . U 4 HOH A 33 533 2 HOH HOH . U 4 HOH A 34 534 121 HOH HOH . U 4 HOH A 35 535 21 HOH HOH . U 4 HOH A 36 536 18 HOH HOH . U 4 HOH A 37 537 8 HOH HOH . U 4 HOH A 38 538 58 HOH HOH . U 4 HOH A 39 539 125 HOH HOH . U 4 HOH A 40 540 78 HOH HOH . U 4 HOH A 41 541 15 HOH HOH . U 4 HOH A 42 542 17 HOH HOH . U 4 HOH A 43 543 43 HOH HOH . U 4 HOH A 44 544 16 HOH HOH . U 4 HOH A 45 545 6 HOH HOH . U 4 HOH A 46 546 111 HOH HOH . U 4 HOH A 47 547 74 HOH HOH . U 4 HOH A 48 548 44 HOH HOH . U 4 HOH A 49 549 35 HOH HOH . U 4 HOH A 50 550 14 HOH HOH . U 4 HOH A 51 551 22 HOH HOH . U 4 HOH A 52 552 4 HOH HOH . U 4 HOH A 53 553 19 HOH HOH . U 4 HOH A 54 554 3 HOH HOH . U 4 HOH A 55 555 89 HOH HOH . U 4 HOH A 56 556 23 HOH HOH . U 4 HOH A 57 557 11 HOH HOH . U 4 HOH A 58 558 12 HOH HOH . U 4 HOH A 59 559 119 HOH HOH . U 4 HOH A 60 560 67 HOH HOH . U 4 HOH A 61 561 91 HOH HOH . U 4 HOH A 62 562 10 HOH HOH . U 4 HOH A 63 563 139 HOH HOH . U 4 HOH A 64 564 49 HOH HOH . U 4 HOH A 65 565 1 HOH HOH . U 4 HOH A 66 566 76 HOH HOH . U 4 HOH A 67 567 63 HOH HOH . U 4 HOH A 68 568 150 HOH HOH . U 4 HOH A 69 569 56 HOH HOH . U 4 HOH A 70 570 71 HOH HOH . U 4 HOH A 71 571 52 HOH HOH . U 4 HOH A 72 572 153 HOH HOH . U 4 HOH A 73 573 94 HOH HOH . U 4 HOH A 74 574 137 HOH HOH . U 4 HOH A 75 575 113 HOH HOH . U 4 HOH A 76 576 92 HOH HOH . U 4 HOH A 77 577 90 HOH HOH . U 4 HOH A 78 578 34 HOH HOH . U 4 HOH A 79 579 24 HOH HOH . U 4 HOH A 80 580 36 HOH HOH . U 4 HOH A 81 581 110 HOH HOH . U 4 HOH A 82 582 51 HOH HOH . U 4 HOH A 83 583 73 HOH HOH . U 4 HOH A 84 584 32 HOH HOH . U 4 HOH A 85 585 141 HOH HOH . U 4 HOH A 86 586 95 HOH HOH . U 4 HOH A 87 587 70 HOH HOH . U 4 HOH A 88 588 96 HOH HOH . U 4 HOH A 89 589 115 HOH HOH . U 4 HOH A 90 590 55 HOH HOH . U 4 HOH A 91 591 69 HOH HOH . U 4 HOH A 92 592 120 HOH HOH . U 4 HOH A 93 593 87 HOH HOH . U 4 HOH A 94 594 117 HOH HOH . U 4 HOH A 95 595 101 HOH HOH . U 4 HOH A 96 596 128 HOH HOH . U 4 HOH A 97 597 97 HOH HOH . U 4 HOH A 98 598 102 HOH HOH . U 4 HOH A 99 599 88 HOH HOH . U 4 HOH A 100 600 30 HOH HOH . U 4 HOH A 101 601 122 HOH HOH . U 4 HOH A 102 602 109 HOH HOH . U 4 HOH A 103 603 118 HOH HOH . U 4 HOH A 104 604 124 HOH HOH . U 4 HOH A 105 605 29 HOH HOH . U 4 HOH A 106 606 83 HOH HOH . U 4 HOH A 107 607 104 HOH HOH . U 4 HOH A 108 608 144 HOH HOH . U 4 HOH A 109 609 72 HOH HOH . U 4 HOH A 110 610 103 HOH HOH . U 4 HOH A 111 611 81 HOH HOH . U 4 HOH A 112 612 107 HOH HOH . U 4 HOH A 113 613 54 HOH HOH . U 4 HOH A 114 614 47 HOH HOH . U 4 HOH A 115 615 66 HOH HOH . U 4 HOH A 116 616 116 HOH HOH . U 4 HOH A 117 617 133 HOH HOH . U 4 HOH A 118 618 26 HOH HOH . U 4 HOH A 119 619 151 HOH HOH . U 4 HOH A 120 620 126 HOH HOH . U 4 HOH A 121 621 80 HOH HOH . U 4 HOH A 122 622 132 HOH HOH . U 4 HOH A 123 623 82 HOH HOH . U 4 HOH A 124 624 53 HOH HOH . U 4 HOH A 125 625 106 HOH HOH . U 4 HOH A 126 626 148 HOH HOH . U 4 HOH A 127 627 138 HOH HOH . U 4 HOH A 128 628 130 HOH HOH . U 4 HOH A 129 629 100 HOH HOH . U 4 HOH A 130 630 143 HOH HOH . U 4 HOH A 131 631 129 HOH HOH . U 4 HOH A 132 632 131 HOH HOH . U 4 HOH A 133 633 85 HOH HOH . U 4 HOH A 134 634 28 HOH HOH . U 4 HOH A 135 635 86 HOH HOH . U 4 HOH A 136 636 114 HOH HOH . U 4 HOH A 137 637 146 HOH HOH . U 4 HOH A 138 638 127 HOH HOH . U 4 HOH A 139 639 112 HOH HOH . U 4 HOH A 140 640 134 HOH HOH . U 4 HOH A 141 641 79 HOH HOH . U 4 HOH A 142 642 147 HOH HOH . U 4 HOH A 143 643 135 HOH HOH . U 4 HOH A 144 644 64 HOH HOH . U 4 HOH A 145 645 77 HOH HOH . U 4 HOH A 146 646 145 HOH HOH . U 4 HOH A 147 647 65 HOH HOH . U 4 HOH A 148 648 75 HOH HOH . U 4 HOH A 149 649 68 HOH HOH . U 4 HOH A 150 650 60 HOH HOH . U 4 HOH A 151 651 93 HOH HOH . U 4 HOH A 152 652 108 HOH HOH . U 4 HOH A 153 653 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . P 2 10.395 -20.34 12.102 1 110.14 ? S DMS 415 A 1 HETATM 2 O O DMS . . . P 2 11.078 -19.418 11.19 1 110.07 ? O DMS 415 A 1 HETATM 3 C C1 DMS . . . P 2 11.018 -19.972 13.769 1 110.15 ? C1 DMS 415 A 1 HETATM 4 C C2 DMS . . . P 2 8.713 -19.698 12.335 1 110.02 ? C2 DMS 415 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #