data_7H5K # _model_server_result.job_id ljMuxf4F3HQIsSPFGMgvaQ _model_server_result.datetime_utc '2024-11-07 13:40:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":917}' # _entry.id 7H5K # _exptl.entry_id 7H5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.76 _cell.angle_gamma 90 _cell.entry_id 7H5K _cell.length_a 45.96 _cell.length_b 74.11 _cell.length_c 53.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 7H5K _atom_sites.fract_transf_matrix[1][1] 0.021758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007816 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 901 901 ACT ACT . C 3 DMS A 1 902 2501 DMS DMS . D 3 DMS A 1 903 3001 DMS DMS . E 3 DMS A 1 904 3101 DMS DMS . F 4 EMR A 1 905 3301 EMR LIG . G 3 DMS A 1 906 3501 DMS DMS . H 3 DMS A 1 907 3503 DMS DMS . I 3 DMS A 1 908 3504 DMS DMS . J 3 DMS A 1 909 3601 DMS DMS . K 3 DMS A 1 910 3701 DMS DMS . L 3 DMS A 1 911 3801 DMS DMS . M 3 DMS A 1 912 3901 DMS DMS . N 3 DMS A 1 913 4001 DMS DMS . O 3 DMS A 1 914 4101 DMS DMS . P 3 DMS A 1 915 4201 DMS DMS . Q 3 DMS A 1 916 4301 DMS DMS . R 3 DMS A 1 917 4401 DMS DMS . S 5 HOH A 1 1001 2 HOH HOH . S 5 HOH A 2 1002 81 HOH HOH . S 5 HOH A 3 1003 26 HOH HOH . S 5 HOH A 4 1004 104 HOH HOH . S 5 HOH A 5 1005 24 HOH HOH . S 5 HOH A 6 1006 40 HOH HOH . S 5 HOH A 7 1007 23 HOH HOH . S 5 HOH A 8 1008 29 HOH HOH . S 5 HOH A 9 1009 43 HOH HOH . S 5 HOH A 10 1010 41 HOH HOH . S 5 HOH A 11 1011 140 HOH HOH . S 5 HOH A 12 1012 35 HOH HOH . S 5 HOH A 13 1013 20 HOH HOH . S 5 HOH A 14 1014 77 HOH HOH . S 5 HOH A 15 1015 17 HOH HOH . S 5 HOH A 16 1016 49 HOH HOH . S 5 HOH A 17 1017 76 HOH HOH . S 5 HOH A 18 1018 100 HOH HOH . S 5 HOH A 19 1019 28 HOH HOH . S 5 HOH A 20 1020 12 HOH HOH . S 5 HOH A 21 1021 129 HOH HOH . S 5 HOH A 22 1022 32 HOH HOH . S 5 HOH A 23 1023 102 HOH HOH . S 5 HOH A 24 1024 16 HOH HOH . S 5 HOH A 25 1025 8 HOH HOH . S 5 HOH A 26 1026 10 HOH HOH . S 5 HOH A 27 1027 84 HOH HOH . S 5 HOH A 28 1028 67 HOH HOH . S 5 HOH A 29 1029 89 HOH HOH . S 5 HOH A 30 1030 54 HOH HOH . S 5 HOH A 31 1031 9 HOH HOH . S 5 HOH A 32 1032 14 HOH HOH . S 5 HOH A 33 1033 22 HOH HOH . S 5 HOH A 34 1034 86 HOH HOH . S 5 HOH A 35 1035 116 HOH HOH . S 5 HOH A 36 1036 27 HOH HOH . S 5 HOH A 37 1037 58 HOH HOH . S 5 HOH A 38 1038 15 HOH HOH . S 5 HOH A 39 1039 50 HOH HOH . S 5 HOH A 40 1040 99 HOH HOH . S 5 HOH A 41 1041 34 HOH HOH . S 5 HOH A 42 1042 13 HOH HOH . S 5 HOH A 43 1043 135 HOH HOH . S 5 HOH A 44 1044 61 HOH HOH . S 5 HOH A 45 1045 69 HOH HOH . S 5 HOH A 46 1046 11 HOH HOH . S 5 HOH A 47 1047 118 HOH HOH . S 5 HOH A 48 1048 78 HOH HOH . S 5 HOH A 49 1049 66 HOH HOH . S 5 HOH A 50 1050 115 HOH HOH . S 5 HOH A 51 1051 4 HOH HOH . S 5 HOH A 52 1052 47 HOH HOH . S 5 HOH A 53 1053 133 HOH HOH . S 5 HOH A 54 1054 149 HOH HOH . S 5 HOH A 55 1055 51 HOH HOH . S 5 HOH A 56 1056 1 HOH HOH . S 5 HOH A 57 1057 7 HOH HOH . S 5 HOH A 58 1058 155 HOH HOH . S 5 HOH A 59 1059 107 HOH HOH . S 5 HOH A 60 1060 38 HOH HOH . S 5 HOH A 61 1061 6 HOH HOH . S 5 HOH A 62 1062 18 HOH HOH . S 5 HOH A 63 1063 55 HOH HOH . S 5 HOH A 64 1064 3 HOH HOH . S 5 HOH A 65 1065 72 HOH HOH . S 5 HOH A 66 1066 30 HOH HOH . S 5 HOH A 67 1067 60 HOH HOH . S 5 HOH A 68 1068 45 HOH HOH . S 5 HOH A 69 1069 63 HOH HOH . S 5 HOH A 70 1070 113 HOH HOH . S 5 HOH A 71 1071 36 HOH HOH . S 5 HOH A 72 1072 144 HOH HOH . S 5 HOH A 73 1073 65 HOH HOH . S 5 HOH A 74 1074 19 HOH HOH . S 5 HOH A 75 1075 56 HOH HOH . S 5 HOH A 76 1076 46 HOH HOH . S 5 HOH A 77 1077 33 HOH HOH . S 5 HOH A 78 1078 88 HOH HOH . S 5 HOH A 79 1079 145 HOH HOH . S 5 HOH A 80 1080 25 HOH HOH . S 5 HOH A 81 1081 117 HOH HOH . S 5 HOH A 82 1082 142 HOH HOH . S 5 HOH A 83 1083 93 HOH HOH . S 5 HOH A 84 1084 153 HOH HOH . S 5 HOH A 85 1085 44 HOH HOH . S 5 HOH A 86 1086 146 HOH HOH . S 5 HOH A 87 1087 132 HOH HOH . S 5 HOH A 88 1088 108 HOH HOH . S 5 HOH A 89 1089 57 HOH HOH . S 5 HOH A 90 1090 80 HOH HOH . S 5 HOH A 91 1091 31 HOH HOH . S 5 HOH A 92 1092 97 HOH HOH . S 5 HOH A 93 1093 136 HOH HOH . S 5 HOH A 94 1094 39 HOH HOH . S 5 HOH A 95 1095 91 HOH HOH . S 5 HOH A 96 1096 82 HOH HOH . S 5 HOH A 97 1097 5 HOH HOH . S 5 HOH A 98 1098 71 HOH HOH . S 5 HOH A 99 1099 48 HOH HOH . S 5 HOH A 100 1100 147 HOH HOH . S 5 HOH A 101 1101 124 HOH HOH . S 5 HOH A 102 1102 105 HOH HOH . S 5 HOH A 103 1103 85 HOH HOH . S 5 HOH A 104 1104 73 HOH HOH . S 5 HOH A 105 1105 127 HOH HOH . S 5 HOH A 106 1106 139 HOH HOH . S 5 HOH A 107 1107 52 HOH HOH . S 5 HOH A 108 1108 62 HOH HOH . S 5 HOH A 109 1109 42 HOH HOH . S 5 HOH A 110 1110 87 HOH HOH . S 5 HOH A 111 1111 64 HOH HOH . S 5 HOH A 112 1112 74 HOH HOH . S 5 HOH A 113 1113 92 HOH HOH . S 5 HOH A 114 1114 59 HOH HOH . S 5 HOH A 115 1115 150 HOH HOH . S 5 HOH A 116 1116 114 HOH HOH . S 5 HOH A 117 1117 106 HOH HOH . S 5 HOH A 118 1118 53 HOH HOH . S 5 HOH A 119 1119 156 HOH HOH . S 5 HOH A 120 1120 101 HOH HOH . S 5 HOH A 121 1121 37 HOH HOH . S 5 HOH A 122 1122 151 HOH HOH . S 5 HOH A 123 1123 134 HOH HOH . S 5 HOH A 124 1124 152 HOH HOH . S 5 HOH A 125 1125 70 HOH HOH . S 5 HOH A 126 1126 131 HOH HOH . S 5 HOH A 127 1127 83 HOH HOH . S 5 HOH A 128 1128 121 HOH HOH . S 5 HOH A 129 1129 126 HOH HOH . S 5 HOH A 130 1130 21 HOH HOH . S 5 HOH A 131 1131 123 HOH HOH . S 5 HOH A 132 1132 119 HOH HOH . S 5 HOH A 133 1133 103 HOH HOH . S 5 HOH A 134 1134 90 HOH HOH . S 5 HOH A 135 1135 148 HOH HOH . S 5 HOH A 136 1136 68 HOH HOH . S 5 HOH A 137 1137 130 HOH HOH . S 5 HOH A 138 1138 79 HOH HOH . S 5 HOH A 139 1139 111 HOH HOH . S 5 HOH A 140 1140 138 HOH HOH . S 5 HOH A 141 1141 128 HOH HOH . S 5 HOH A 142 1142 75 HOH HOH . S 5 HOH A 143 1143 109 HOH HOH . S 5 HOH A 144 1144 122 HOH HOH . S 5 HOH A 145 1145 95 HOH HOH . S 5 HOH A 146 1146 98 HOH HOH . S 5 HOH A 147 1147 110 HOH HOH . S 5 HOH A 148 1148 94 HOH HOH . S 5 HOH A 149 1149 125 HOH HOH . S 5 HOH A 150 1150 154 HOH HOH . S 5 HOH A 151 1151 120 HOH HOH . S 5 HOH A 152 1152 141 HOH HOH . S 5 HOH A 153 1153 96 HOH HOH . S 5 HOH A 154 1154 112 HOH HOH . S 5 HOH A 155 1155 137 HOH HOH . S 5 HOH A 156 1156 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . R 3 -10.126 16.833 -12.299 1 106.13 ? S DMS 917 A 1 HETATM 2 O O DMS . . . R 3 -8.908 17.481 -11.799 1 106.04 ? O DMS 917 A 1 HETATM 3 C C1 DMS . . . R 3 -11.528 17.733 -11.584 1 105.98 ? C1 DMS 917 A 1 HETATM 4 C C2 DMS . . . R 3 -10.334 17.367 -14.023 1 106.15 ? C2 DMS 917 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #