data_7H5Z # _model_server_result.job_id 4lwSoADVtdGkBAielTwrSw _model_server_result.datetime_utc '2024-11-27 21:52:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7H5Z # _exptl.entry_id 7H5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.86 _cell.angle_gamma 90 _cell.entry_id 7H5Z _cell.length_a 46.01 _cell.length_b 74.07 _cell.length_c 53.81 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7H5Z _atom_sites.fract_transf_matrix[1][1] 0.021734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 401 DMS DMS . C 3 PHN A 1 402 402 PHN LIG . D 2 DMS A 1 403 405 DMS DMS . E 2 DMS A 1 404 406 DMS DMS . F 2 DMS A 1 405 501 DMS DMS . G 2 DMS A 1 406 701 DMS DMS . H 2 DMS A 1 407 801 DMS DMS . I 2 DMS A 1 408 901 DMS DMS . J 2 DMS A 1 409 1001 DMS DMS . K 2 DMS A 1 410 1102 DMS DMS . L 2 DMS A 1 411 1104 DMS DMS . M 2 DMS A 1 412 1105 DMS DMS . N 2 DMS A 1 413 1201 DMS DMS . O 2 DMS A 1 414 1202 DMS DMS . P 2 DMS A 1 415 1301 DMS DMS . Q 2 DMS A 1 416 1401 DMS DMS . R 2 DMS A 1 417 1501 DMS DMS . S 2 DMS A 1 418 1701 DMS DMS . T 4 HOH A 1 501 16 HOH HOH . T 4 HOH A 2 502 148 HOH HOH . T 4 HOH A 3 503 151 HOH HOH . T 4 HOH A 4 504 59 HOH HOH . T 4 HOH A 5 505 121 HOH HOH . T 4 HOH A 6 506 53 HOH HOH . T 4 HOH A 7 507 147 HOH HOH . T 4 HOH A 8 508 12 HOH HOH . T 4 HOH A 9 509 26 HOH HOH . T 4 HOH A 10 510 60 HOH HOH . T 4 HOH A 11 511 19 HOH HOH . T 4 HOH A 12 512 68 HOH HOH . T 4 HOH A 13 513 94 HOH HOH . T 4 HOH A 14 514 5 HOH HOH . T 4 HOH A 15 515 24 HOH HOH . T 4 HOH A 16 516 82 HOH HOH . T 4 HOH A 17 517 39 HOH HOH . T 4 HOH A 18 518 69 HOH HOH . T 4 HOH A 19 519 36 HOH HOH . T 4 HOH A 20 520 80 HOH HOH . T 4 HOH A 21 521 66 HOH HOH . T 4 HOH A 22 522 109 HOH HOH . T 4 HOH A 23 523 97 HOH HOH . T 4 HOH A 24 524 112 HOH HOH . T 4 HOH A 25 525 70 HOH HOH . T 4 HOH A 26 526 11 HOH HOH . T 4 HOH A 27 527 17 HOH HOH . T 4 HOH A 28 528 54 HOH HOH . T 4 HOH A 29 529 40 HOH HOH . T 4 HOH A 30 530 18 HOH HOH . T 4 HOH A 31 531 138 HOH HOH . T 4 HOH A 32 532 4 HOH HOH . T 4 HOH A 33 533 34 HOH HOH . T 4 HOH A 34 534 62 HOH HOH . T 4 HOH A 35 535 55 HOH HOH . T 4 HOH A 36 536 6 HOH HOH . T 4 HOH A 37 537 47 HOH HOH . T 4 HOH A 38 538 2 HOH HOH . T 4 HOH A 39 539 31 HOH HOH . T 4 HOH A 40 540 67 HOH HOH . T 4 HOH A 41 541 72 HOH HOH . T 4 HOH A 42 542 25 HOH HOH . T 4 HOH A 43 543 83 HOH HOH . T 4 HOH A 44 544 15 HOH HOH . T 4 HOH A 45 545 30 HOH HOH . T 4 HOH A 46 546 1 HOH HOH . T 4 HOH A 47 547 14 HOH HOH . T 4 HOH A 48 548 37 HOH HOH . T 4 HOH A 49 549 134 HOH HOH . T 4 HOH A 50 550 51 HOH HOH . T 4 HOH A 51 551 32 HOH HOH . T 4 HOH A 52 552 86 HOH HOH . T 4 HOH A 53 553 23 HOH HOH . T 4 HOH A 54 554 52 HOH HOH . T 4 HOH A 55 555 10 HOH HOH . T 4 HOH A 56 556 120 HOH HOH . T 4 HOH A 57 557 96 HOH HOH . T 4 HOH A 58 558 21 HOH HOH . T 4 HOH A 59 559 27 HOH HOH . T 4 HOH A 60 560 89 HOH HOH . T 4 HOH A 61 561 22 HOH HOH . T 4 HOH A 62 562 124 HOH HOH . T 4 HOH A 63 563 87 HOH HOH . T 4 HOH A 64 564 64 HOH HOH . T 4 HOH A 65 565 3 HOH HOH . T 4 HOH A 66 566 117 HOH HOH . T 4 HOH A 67 567 50 HOH HOH . T 4 HOH A 68 568 114 HOH HOH . T 4 HOH A 69 569 155 HOH HOH . T 4 HOH A 70 570 7 HOH HOH . T 4 HOH A 71 571 28 HOH HOH . T 4 HOH A 72 572 42 HOH HOH . T 4 HOH A 73 573 108 HOH HOH . T 4 HOH A 74 574 8 HOH HOH . T 4 HOH A 75 575 13 HOH HOH . T 4 HOH A 76 576 84 HOH HOH . T 4 HOH A 77 577 29 HOH HOH . T 4 HOH A 78 578 135 HOH HOH . T 4 HOH A 79 579 33 HOH HOH . T 4 HOH A 80 580 20 HOH HOH . T 4 HOH A 81 581 115 HOH HOH . T 4 HOH A 82 582 154 HOH HOH . T 4 HOH A 83 583 77 HOH HOH . T 4 HOH A 84 584 91 HOH HOH . T 4 HOH A 85 585 71 HOH HOH . T 4 HOH A 86 586 9 HOH HOH . T 4 HOH A 87 587 57 HOH HOH . T 4 HOH A 88 588 130 HOH HOH . T 4 HOH A 89 589 107 HOH HOH . T 4 HOH A 90 590 56 HOH HOH . T 4 HOH A 91 591 140 HOH HOH . T 4 HOH A 92 592 158 HOH HOH . T 4 HOH A 93 593 76 HOH HOH . T 4 HOH A 94 594 106 HOH HOH . T 4 HOH A 95 595 126 HOH HOH . T 4 HOH A 96 596 92 HOH HOH . T 4 HOH A 97 597 150 HOH HOH . T 4 HOH A 98 598 73 HOH HOH . T 4 HOH A 99 599 81 HOH HOH . T 4 HOH A 100 600 43 HOH HOH . T 4 HOH A 101 601 90 HOH HOH . T 4 HOH A 102 602 129 HOH HOH . T 4 HOH A 103 603 38 HOH HOH . T 4 HOH A 104 604 105 HOH HOH . T 4 HOH A 105 605 75 HOH HOH . T 4 HOH A 106 606 85 HOH HOH . T 4 HOH A 107 607 98 HOH HOH . T 4 HOH A 108 608 61 HOH HOH . T 4 HOH A 109 609 118 HOH HOH . T 4 HOH A 110 610 78 HOH HOH . T 4 HOH A 111 611 46 HOH HOH . T 4 HOH A 112 612 127 HOH HOH . T 4 HOH A 113 613 45 HOH HOH . T 4 HOH A 114 614 48 HOH HOH . T 4 HOH A 115 615 95 HOH HOH . T 4 HOH A 116 616 35 HOH HOH . T 4 HOH A 117 617 111 HOH HOH . T 4 HOH A 118 618 141 HOH HOH . T 4 HOH A 119 619 104 HOH HOH . T 4 HOH A 120 620 103 HOH HOH . T 4 HOH A 121 621 44 HOH HOH . T 4 HOH A 122 622 49 HOH HOH . T 4 HOH A 123 623 110 HOH HOH . T 4 HOH A 124 624 163 HOH HOH . T 4 HOH A 125 625 153 HOH HOH . T 4 HOH A 126 626 142 HOH HOH . T 4 HOH A 127 627 65 HOH HOH . T 4 HOH A 128 628 145 HOH HOH . T 4 HOH A 129 629 159 HOH HOH . T 4 HOH A 130 630 79 HOH HOH . T 4 HOH A 131 631 102 HOH HOH . T 4 HOH A 132 632 128 HOH HOH . T 4 HOH A 133 633 119 HOH HOH . T 4 HOH A 134 634 88 HOH HOH . T 4 HOH A 135 635 152 HOH HOH . T 4 HOH A 136 636 41 HOH HOH . T 4 HOH A 137 637 113 HOH HOH . T 4 HOH A 138 638 133 HOH HOH . T 4 HOH A 139 639 123 HOH HOH . T 4 HOH A 140 640 136 HOH HOH . T 4 HOH A 141 641 162 HOH HOH . T 4 HOH A 142 642 101 HOH HOH . T 4 HOH A 143 643 149 HOH HOH . T 4 HOH A 144 644 161 HOH HOH . T 4 HOH A 145 645 122 HOH HOH . T 4 HOH A 146 646 125 HOH HOH . T 4 HOH A 147 647 157 HOH HOH . T 4 HOH A 148 648 137 HOH HOH . T 4 HOH A 149 649 63 HOH HOH . T 4 HOH A 150 650 156 HOH HOH . T 4 HOH A 151 651 100 HOH HOH . T 4 HOH A 152 652 131 HOH HOH . T 4 HOH A 153 653 144 HOH HOH . T 4 HOH A 154 654 143 HOH HOH . T 4 HOH A 155 655 99 HOH HOH . T 4 HOH A 156 656 139 HOH HOH . T 4 HOH A 157 657 74 HOH HOH . T 4 HOH A 158 658 58 HOH HOH . T 4 HOH A 159 659 146 HOH HOH . T 4 HOH A 160 660 116 HOH HOH . T 4 HOH A 161 661 160 HOH HOH . T 4 HOH A 162 662 132 HOH HOH . T 4 HOH A 163 663 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 2 -10.154 16.759 -11.982 1 99.73 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 2 -8.844 17.337 -11.658 1 99.56 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 2 -11.391 17.9 -11.311 1 99.6 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 2 -10.459 17.102 -13.739 1 99.7 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 4 #