data_7H9Y # _model_server_result.job_id StWMj_AZFDtGeWuUi0UMmQ _model_server_result.datetime_utc '2025-07-19 21:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7h9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7H9Y # _exptl.entry_id 7H9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.672 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7H9Y _cell.length_a 66.94 _cell.length_b 91.35 _cell.length_c 99.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Cl F2 N3' _chem_comp.formula_weight 247.672 _chem_comp.id A1AXF _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C1 A1AXF sing 1 n n C1 F2 A1AXF sing 2 n n C1 C2 A1AXF sing 3 n n C2 C3 A1AXF doub 4 n y C2 C10 A1AXF sing 5 n y C3 C4 A1AXF sing 6 n y C4 N1 A1AXF sing 7 n n C4 N3 A1AXF doub 8 n y N1 C5 A1AXF sing 9 n n N1 C8 A1AXF sing 10 n n C5 C6 A1AXF sing 11 n n C6 N2 A1AXF sing 12 n n N2 C7 A1AXF sing 13 n n C7 C8 A1AXF sing 14 n n N3 C9 A1AXF sing 15 n y C9 C10 A1AXF doub 16 n y C10 CL1 A1AXF sing 17 n n C7 H73 A1AXF sing 18 n n C7 H72 A1AXF sing 19 n n C8 H82 A1AXF sing 20 n n C8 H83 A1AXF sing 21 n n C9 H9 A1AXF sing 22 n n C1 H1 A1AXF sing 23 n n C3 H3 A1AXF sing 24 n n C5 H53 A1AXF sing 25 n n C5 H52 A1AXF sing 26 n n C6 H63 A1AXF sing 27 n n C6 H62 A1AXF sing 28 n n N2 H23 A1AXF sing 29 n n # _atom_sites.entry_id 7H9Y _atom_sites.fract_transf_matrix[1][1] 0.014939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AXF A 1 301 301 A1AXF D5S . C 3 HOH A 1 401 72 HOH HOH . C 3 HOH A 2 402 137 HOH HOH . C 3 HOH A 3 403 18 HOH HOH . C 3 HOH A 4 404 134 HOH HOH . C 3 HOH A 5 405 23 HOH HOH . C 3 HOH A 6 406 75 HOH HOH . C 3 HOH A 7 407 14 HOH HOH . C 3 HOH A 8 408 12 HOH HOH . C 3 HOH A 9 409 68 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 132 HOH HOH . C 3 HOH A 12 412 36 HOH HOH . C 3 HOH A 13 413 22 HOH HOH . C 3 HOH A 14 414 2 HOH HOH . C 3 HOH A 15 415 19 HOH HOH . C 3 HOH A 16 416 66 HOH HOH . C 3 HOH A 17 417 1 HOH HOH . C 3 HOH A 18 418 15 HOH HOH . C 3 HOH A 19 419 60 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 65 HOH HOH . C 3 HOH A 22 422 64 HOH HOH . C 3 HOH A 23 423 32 HOH HOH . C 3 HOH A 24 424 59 HOH HOH . C 3 HOH A 25 425 63 HOH HOH . C 3 HOH A 26 426 6 HOH HOH . C 3 HOH A 27 427 10 HOH HOH . C 3 HOH A 28 428 77 HOH HOH . C 3 HOH A 29 429 92 HOH HOH . C 3 HOH A 30 430 55 HOH HOH . C 3 HOH A 31 431 89 HOH HOH . C 3 HOH A 32 432 25 HOH HOH . C 3 HOH A 33 433 17 HOH HOH . C 3 HOH A 34 434 8 HOH HOH . C 3 HOH A 35 435 42 HOH HOH . C 3 HOH A 36 436 100 HOH HOH . C 3 HOH A 37 437 45 HOH HOH . C 3 HOH A 38 438 26 HOH HOH . C 3 HOH A 39 439 7 HOH HOH . C 3 HOH A 40 440 96 HOH HOH . C 3 HOH A 41 441 35 HOH HOH . C 3 HOH A 42 442 13 HOH HOH . C 3 HOH A 43 443 21 HOH HOH . C 3 HOH A 44 444 9 HOH HOH . C 3 HOH A 45 445 28 HOH HOH . C 3 HOH A 46 446 84 HOH HOH . C 3 HOH A 47 447 124 HOH HOH . C 3 HOH A 48 448 82 HOH HOH . C 3 HOH A 49 449 105 HOH HOH . C 3 HOH A 50 450 30 HOH HOH . C 3 HOH A 51 451 136 HOH HOH . C 3 HOH A 52 452 39 HOH HOH . C 3 HOH A 53 453 70 HOH HOH . C 3 HOH A 54 454 104 HOH HOH . C 3 HOH A 55 455 113 HOH HOH . C 3 HOH A 56 456 85 HOH HOH . C 3 HOH A 57 457 5 HOH HOH . C 3 HOH A 58 458 47 HOH HOH . C 3 HOH A 59 459 50 HOH HOH . C 3 HOH A 60 460 54 HOH HOH . C 3 HOH A 61 461 33 HOH HOH . C 3 HOH A 62 462 24 HOH HOH . C 3 HOH A 63 463 62 HOH HOH . C 3 HOH A 64 464 31 HOH HOH . C 3 HOH A 65 465 53 HOH HOH . C 3 HOH A 66 466 34 HOH HOH . C 3 HOH A 67 467 57 HOH HOH . C 3 HOH A 68 468 51 HOH HOH . C 3 HOH A 69 469 49 HOH HOH . C 3 HOH A 70 470 16 HOH HOH . C 3 HOH A 71 471 52 HOH HOH . C 3 HOH A 72 472 91 HOH HOH . C 3 HOH A 73 473 58 HOH HOH . C 3 HOH A 74 474 37 HOH HOH . C 3 HOH A 75 475 94 HOH HOH . C 3 HOH A 76 476 76 HOH HOH . C 3 HOH A 77 477 3 HOH HOH . C 3 HOH A 78 478 29 HOH HOH . C 3 HOH A 79 479 27 HOH HOH . C 3 HOH A 80 480 88 HOH HOH . C 3 HOH A 81 481 46 HOH HOH . C 3 HOH A 82 482 73 HOH HOH . C 3 HOH A 83 483 119 HOH HOH . C 3 HOH A 84 484 79 HOH HOH . C 3 HOH A 85 485 90 HOH HOH . C 3 HOH A 86 486 71 HOH HOH . C 3 HOH A 87 487 74 HOH HOH . C 3 HOH A 88 488 48 HOH HOH . C 3 HOH A 89 489 4 HOH HOH . C 3 HOH A 90 490 78 HOH HOH . C 3 HOH A 91 491 121 HOH HOH . C 3 HOH A 92 492 43 HOH HOH . C 3 HOH A 93 493 118 HOH HOH . C 3 HOH A 94 494 101 HOH HOH . C 3 HOH A 95 495 80 HOH HOH . C 3 HOH A 96 496 114 HOH HOH . C 3 HOH A 97 497 130 HOH HOH . C 3 HOH A 98 498 128 HOH HOH . C 3 HOH A 99 499 99 HOH HOH . C 3 HOH A 100 500 102 HOH HOH . C 3 HOH A 101 501 67 HOH HOH . C 3 HOH A 102 502 123 HOH HOH . C 3 HOH A 103 503 56 HOH HOH . C 3 HOH A 104 504 44 HOH HOH . C 3 HOH A 105 505 127 HOH HOH . C 3 HOH A 106 506 122 HOH HOH . C 3 HOH A 107 507 135 HOH HOH . C 3 HOH A 108 508 115 HOH HOH . C 3 HOH A 109 509 81 HOH HOH . C 3 HOH A 110 510 111 HOH HOH . C 3 HOH A 111 511 131 HOH HOH . C 3 HOH A 112 512 97 HOH HOH . C 3 HOH A 113 513 110 HOH HOH . C 3 HOH A 114 514 109 HOH HOH . C 3 HOH A 115 515 125 HOH HOH . C 3 HOH A 116 516 41 HOH HOH . C 3 HOH A 117 517 98 HOH HOH . C 3 HOH A 118 518 107 HOH HOH . C 3 HOH A 119 519 108 HOH HOH . C 3 HOH A 120 520 93 HOH HOH . C 3 HOH A 121 521 38 HOH HOH . C 3 HOH A 122 522 106 HOH HOH . C 3 HOH A 123 523 40 HOH HOH . C 3 HOH A 124 524 61 HOH HOH . C 3 HOH A 125 525 83 HOH HOH . C 3 HOH A 126 526 126 HOH HOH . C 3 HOH A 127 527 87 HOH HOH . C 3 HOH A 128 528 117 HOH HOH . C 3 HOH A 129 529 138 HOH HOH . C 3 HOH A 130 530 86 HOH HOH . C 3 HOH A 131 531 69 HOH HOH . C 3 HOH A 132 532 120 HOH HOH . C 3 HOH A 133 533 116 HOH HOH . C 3 HOH A 134 534 133 HOH HOH . C 3 HOH A 135 535 129 HOH HOH . C 3 HOH A 136 536 103 HOH HOH . C 3 HOH A 137 537 112 HOH HOH . C 3 HOH A 138 538 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AXF . . . B 2 4.886 -14.567 -25.313 0.81 45.32 ? C10 A1AXF 301 A 1 HETATM 2 C C7 A1AXF . . . B 2 4.647 -8.871 -22.73 0.81 53.45 ? C7 A1AXF 301 A 1 HETATM 3 C C8 A1AXF . . . B 2 4.681 -9.75 -23.958 0.81 31.48 ? C8 A1AXF 301 A 1 HETATM 4 C C9 A1AXF . . . B 2 3.883 -13.679 -24.985 0.81 36.12 ? C9 A1AXF 301 A 1 HETATM 5 C C1 A1AXF . . . B 2 7.318 -15.174 -25.477 0.81 56.1 ? C1 A1AXF 301 A 1 HETATM 6 C C2 A1AXF . . . B 2 6.213 -14.215 -25.118 0.81 48.49 ? C2 A1AXF 301 A 1 HETATM 7 C C3 A1AXF . . . B 2 6.48 -12.958 -24.594 0.81 42.05 ? C3 A1AXF 301 A 1 HETATM 8 C C4 A1AXF . . . B 2 5.417 -12.101 -24.288 0.81 35.47 ? C4 A1AXF 301 A 1 HETATM 9 C C5 A1AXF . . . B 2 6.825 -10.511 -23.006 0.81 32.63 ? C5 A1AXF 301 A 1 HETATM 10 C C6 A1AXF . . . B 2 7.089 -9.024 -23.085 0.81 46.35 ? C6 A1AXF 301 A 1 HETATM 11 F F1 A1AXF . . . B 2 7.83 -14.871 -26.698 0.81 61.91 ? F1 A1AXF 301 A 1 HETATM 12 F F2 A1AXF . . . B 2 8.354 -15.089 -24.604 0.81 57.06 ? F2 A1AXF 301 A 1 HETATM 13 N N1 A1AXF . . . B 2 5.626 -10.847 -23.77 0.81 35.84 ? N1 A1AXF 301 A 1 HETATM 14 N N2 A1AXF . . . B 2 5.974 -8.249 -22.476 0.81 47.16 ? N2 A1AXF 301 A 1 HETATM 15 N N3 A1AXF . . . B 2 4.139 -12.463 -24.483 0.81 37.79 ? N3 A1AXF 301 A 1 HETATM 16 CL CL1 A1AXF . . . B 2 4.468 -16.129 -25.959 0.81 43.74 ? CL1 A1AXF 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #