data_7HA8 # _model_server_result.job_id 6CYiPTuhzHDe7nRaxNEuLw _model_server_result.datetime_utc '2025-07-27 06:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ha8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7HA8 # _exptl.entry_id 7HA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(1R,2S,4R)-bicyclo[2.2.1]heptan-2-yl]-N'-[2-(pyridin-2-yl)ethyl]thiourea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HA8 _cell.length_a 70.14 _cell.length_b 89.3 _cell.length_c 97.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H21 N3 S' _chem_comp.formula_weight 275.412 _chem_comp.id A1AXY _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(1R,2S,4R)-bicyclo[2.2.1]heptan-2-yl]-N'-[2-(pyridin-2-yl)ethyl]thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 A1AXY doub 1 n n C1 N1 A1AXY sing 2 n n N1 C2 A1AXY sing 3 n n C2 C3 A1AXY sing 4 n n C3 C4 A1AXY sing 5 n n C4 C5 A1AXY doub 6 n y C5 C6 A1AXY sing 7 n y C6 C7 A1AXY doub 8 n y C7 C8 A1AXY sing 9 n y C8 N2 A1AXY doub 10 n y C1 N3 A1AXY sing 11 n n N3 C9 A1AXY sing 12 n n C9 C10 A1AXY sing 13 n n C10 C11 A1AXY sing 14 n n C11 C12 A1AXY sing 15 n n C12 C13 A1AXY sing 16 n n C13 C14 A1AXY sing 17 n n C14 C15 A1AXY sing 18 n n C4 N2 A1AXY sing 19 n y C9 C14 A1AXY sing 20 n n C11 C15 A1AXY sing 21 n n C7 H8 A1AXY sing 22 n n C14 H19 A1AXY sing 23 n n C15 H20 A1AXY sing 24 n n C15 H21 A1AXY sing 25 n n C2 H2 A1AXY sing 26 n n C2 H3 A1AXY sing 27 n n C6 H7 A1AXY sing 28 n n C5 H6 A1AXY sing 29 n n C3 H4 A1AXY sing 30 n n C3 H5 A1AXY sing 31 n n C10 H12 A1AXY sing 32 n n C10 H13 A1AXY sing 33 n n C11 H14 A1AXY sing 34 n n C12 H15 A1AXY sing 35 n n C12 H16 A1AXY sing 36 n n C13 H17 A1AXY sing 37 n n C13 H18 A1AXY sing 38 n n C8 H9 A1AXY sing 39 n n C9 H11 A1AXY sing 40 n n N1 H1 A1AXY sing 41 n n N3 H10 A1AXY sing 42 n n # _atom_sites.entry_id 7HA8 _atom_sites.fract_transf_matrix[1][1] 0.014257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AXY A 1 301 301 A1AXY DVI . C 3 HOH A 1 401 71 HOH HOH . C 3 HOH A 2 402 9 HOH HOH . C 3 HOH A 3 403 67 HOH HOH . C 3 HOH A 4 404 23 HOH HOH . C 3 HOH A 5 405 63 HOH HOH . C 3 HOH A 6 406 33 HOH HOH . C 3 HOH A 7 407 45 HOH HOH . C 3 HOH A 8 408 11 HOH HOH . C 3 HOH A 9 409 54 HOH HOH . C 3 HOH A 10 410 30 HOH HOH . C 3 HOH A 11 411 14 HOH HOH . C 3 HOH A 12 412 22 HOH HOH . C 3 HOH A 13 413 69 HOH HOH . C 3 HOH A 14 414 4 HOH HOH . C 3 HOH A 15 415 51 HOH HOH . C 3 HOH A 16 416 52 HOH HOH . C 3 HOH A 17 417 1 HOH HOH . C 3 HOH A 18 418 35 HOH HOH . C 3 HOH A 19 419 56 HOH HOH . C 3 HOH A 20 420 19 HOH HOH . C 3 HOH A 21 421 8 HOH HOH . C 3 HOH A 22 422 68 HOH HOH . C 3 HOH A 23 423 7 HOH HOH . C 3 HOH A 24 424 37 HOH HOH . C 3 HOH A 25 425 2 HOH HOH . C 3 HOH A 26 426 20 HOH HOH . C 3 HOH A 27 427 47 HOH HOH . C 3 HOH A 28 428 18 HOH HOH . C 3 HOH A 29 429 53 HOH HOH . C 3 HOH A 30 430 36 HOH HOH . C 3 HOH A 31 431 6 HOH HOH . C 3 HOH A 32 432 21 HOH HOH . C 3 HOH A 33 433 65 HOH HOH . C 3 HOH A 34 434 3 HOH HOH . C 3 HOH A 35 435 24 HOH HOH . C 3 HOH A 36 436 27 HOH HOH . C 3 HOH A 37 437 26 HOH HOH . C 3 HOH A 38 438 55 HOH HOH . C 3 HOH A 39 439 66 HOH HOH . C 3 HOH A 40 440 15 HOH HOH . C 3 HOH A 41 441 5 HOH HOH . C 3 HOH A 42 442 25 HOH HOH . C 3 HOH A 43 443 57 HOH HOH . C 3 HOH A 44 444 29 HOH HOH . C 3 HOH A 45 445 16 HOH HOH . C 3 HOH A 46 446 31 HOH HOH . C 3 HOH A 47 447 48 HOH HOH . C 3 HOH A 48 448 42 HOH HOH . C 3 HOH A 49 449 17 HOH HOH . C 3 HOH A 50 450 41 HOH HOH . C 3 HOH A 51 451 43 HOH HOH . C 3 HOH A 52 452 70 HOH HOH . C 3 HOH A 53 453 46 HOH HOH . C 3 HOH A 54 454 58 HOH HOH . C 3 HOH A 55 455 60 HOH HOH . C 3 HOH A 56 456 32 HOH HOH . C 3 HOH A 57 457 10 HOH HOH . C 3 HOH A 58 458 40 HOH HOH . C 3 HOH A 59 459 64 HOH HOH . C 3 HOH A 60 460 50 HOH HOH . C 3 HOH A 61 461 72 HOH HOH . C 3 HOH A 62 462 28 HOH HOH . C 3 HOH A 63 463 62 HOH HOH . C 3 HOH A 64 464 59 HOH HOH . C 3 HOH A 65 465 12 HOH HOH . C 3 HOH A 66 466 49 HOH HOH . C 3 HOH A 67 467 39 HOH HOH . C 3 HOH A 68 468 13 HOH HOH . C 3 HOH A 69 469 34 HOH HOH . C 3 HOH A 70 470 44 HOH HOH . C 3 HOH A 71 471 61 HOH HOH . C 3 HOH A 72 472 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 A1AXY . . . B 2 2.192 38.365 26.297 0.98 59.16 ? C7 A1AXY 301 A 1 HETATM 2 C C14 A1AXY . . . B 2 8.039 31.093 23.669 0.98 60.18 ? C14 A1AXY 301 A 1 HETATM 3 C C15 A1AXY . . . B 2 7.579 30.417 22.379 0.98 45.81 ? C15 A1AXY 301 A 1 HETATM 4 C C2 A1AXY . . . B 2 6.706 36.184 26.551 0.98 55.78 ? C2 A1AXY 301 A 1 HETATM 5 C C1 A1AXY . . . B 2 7.343 34.123 25.399 0.98 57.1 ? C1 A1AXY 301 A 1 HETATM 6 C C6 A1AXY . . . B 2 3.258 39.01 26.879 0.98 70.12 ? C6 A1AXY 301 A 1 HETATM 7 C C5 A1AXY . . . B 2 4.54 38.58 26.6 0.98 77.09 ? C5 A1AXY 301 A 1 HETATM 8 C C4 A1AXY . . . B 2 4.722 37.498 25.742 0.98 76.08 ? C4 A1AXY 301 A 1 HETATM 9 C C3 A1AXY . . . B 2 6.102 36.995 25.416 0.98 71.24 ? C3 A1AXY 301 A 1 HETATM 10 N N2 A1AXY . . . B 2 3.683 36.862 25.168 0.98 66.22 ? N2 A1AXY 301 A 1 HETATM 11 C C10 A1AXY . . . B 2 5.858 31.876 22.971 0.98 55.89 ? C10 A1AXY 301 A 1 HETATM 12 C C11 A1AXY . . . B 2 6.108 30.388 22.783 0.98 55.19 ? C11 A1AXY 301 A 1 HETATM 13 C C12 A1AXY . . . B 2 6.138 29.732 24.169 0.98 53.72 ? C12 A1AXY 301 A 1 HETATM 14 C C13 A1AXY . . . B 2 7.55 30.064 24.693 0.98 49.61 ? C13 A1AXY 301 A 1 HETATM 15 C C8 A1AXY . . . B 2 2.447 37.303 25.455 0.98 74.13 ? C8 A1AXY 301 A 1 HETATM 16 C C9 A1AXY . . . B 2 7.147 32.361 23.686 0.98 54.42 ? C9 A1AXY 301 A 1 HETATM 17 N N1 A1AXY . . . B 2 6.614 34.753 26.313 0.98 65.52 ? N1 A1AXY 301 A 1 HETATM 18 N N3 A1AXY . . . B 2 6.865 32.929 24.997 0.98 68.8 ? N3 A1AXY 301 A 1 HETATM 19 S S1 A1AXY . . . B 2 8.616 34.872 24.619 0.98 110.99 ? S1 A1AXY 301 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #