data_7HG2 # _model_server_result.job_id n9nzJyzxqYk6WV5mu5AuZQ _model_server_result.datetime_utc '2024-11-07 04:36:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":103}' # _entry.id 7HG2 # _exptl.entry_id 7HG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.256 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-7-(pyrazin-2-yl)-2-oxa-7-azaspiro[4.4]nonane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HG2 _cell.length_a 41.561 _cell.length_b 42.068 _cell.length_c 158.698 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,N 1 1 B,I,J,K,O 2 1 C,L,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N3 O' _chem_comp.formula_weight 205.256 _chem_comp.id U0S _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-7-(pyrazin-2-yl)-2-oxa-7-azaspiro[4.4]nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 U0S doub 403 n y N03 C02 U0S sing 404 n y C04 N03 U0S doub 405 n y C06 N05 U0S sing 406 n n C07 C06 U0S sing 407 n n C08 C07 U0S sing 408 n n C10 C09 U0S sing 409 n n O11 C10 U0S sing 410 n n C12 O11 U0S sing 411 n n C09 C08 U0S sing 412 n n C13 C08 U0S sing 413 n n N05 C04 U0S sing 414 n n C14 C04 U0S sing 415 n y N15 C14 U0S doub 416 n y C01 N15 U0S sing 417 n y N05 C13 U0S sing 418 n n C08 C12 U0S sing 419 n n C10 H102 U0S sing 420 n n C10 H101 U0S sing 421 n n C13 H131 U0S sing 422 n n C13 H132 U0S sing 423 n n C01 H011 U0S sing 424 n n C02 H021 U0S sing 425 n n C06 H061 U0S sing 426 n n C06 H062 U0S sing 427 n n C07 H072 U0S sing 428 n n C07 H071 U0S sing 429 n n C09 H091 U0S sing 430 n n C09 H092 U0S sing 431 n n C12 H122 U0S sing 432 n n C12 H121 U0S sing 433 n n C14 H141 U0S sing 434 n n # _atom_sites.entry_id 7HG2 _atom_sites.fract_transf_matrix[1][1] 0.024061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 101 95 SO4 SO4 . E 2 SO4 A 1 102 96 SO4 SO4 . F 3 EDO A 1 103 97 EDO EDO . G 4 A1H97 A 1 104 101 A1H97 LIG . H 2 SO4 A 1 105 4 SO4 SO4 . I 2 SO4 B 1 101 1 SO4 SO4 . J 2 SO4 B 1 102 3 SO4 SO4 . K 5 U0S B 1 103 101 U0S LIG . L 3 EDO C 1 101 101 EDO EDO . M 2 SO4 C 1 102 5 SO4 SO4 . N 6 HOH A 1 201 307 HOH HOH . N 6 HOH A 2 202 304 HOH HOH . N 6 HOH A 3 203 202 HOH HOH . N 6 HOH A 4 204 84 HOH HOH . N 6 HOH A 5 205 208 HOH HOH . N 6 HOH A 6 206 71 HOH HOH . N 6 HOH A 7 207 55 HOH HOH . N 6 HOH A 8 208 85 HOH HOH . N 6 HOH A 9 209 289 HOH HOH . N 6 HOH A 10 210 66 HOH HOH . N 6 HOH A 11 211 91 HOH HOH . N 6 HOH A 12 212 86 HOH HOH . N 6 HOH A 13 213 23 HOH HOH . N 6 HOH A 14 214 8 HOH HOH . N 6 HOH A 15 215 87 HOH HOH . N 6 HOH A 16 216 97 HOH HOH . N 6 HOH A 17 217 259 HOH HOH . N 6 HOH A 18 218 199 HOH HOH . N 6 HOH A 19 219 32 HOH HOH . N 6 HOH A 20 220 139 HOH HOH . N 6 HOH A 21 221 26 HOH HOH . N 6 HOH A 22 222 188 HOH HOH . N 6 HOH A 23 223 290 HOH HOH . N 6 HOH A 24 224 37 HOH HOH . N 6 HOH A 25 225 167 HOH HOH . N 6 HOH A 26 226 78 HOH HOH . N 6 HOH A 27 227 27 HOH HOH . N 6 HOH A 28 228 60 HOH HOH . N 6 HOH A 29 229 93 HOH HOH . N 6 HOH A 30 230 111 HOH HOH . N 6 HOH A 31 231 292 HOH HOH . N 6 HOH A 32 232 260 HOH HOH . N 6 HOH A 33 233 94 HOH HOH . N 6 HOH A 34 234 95 HOH HOH . N 6 HOH A 35 235 293 HOH HOH . N 6 HOH A 36 236 7 HOH HOH . N 6 HOH A 37 237 34 HOH HOH . N 6 HOH A 38 238 38 HOH HOH . N 6 HOH A 39 239 28 HOH HOH . N 6 HOH A 40 240 12 HOH HOH . N 6 HOH A 41 241 116 HOH HOH . N 6 HOH A 42 242 1 HOH HOH . N 6 HOH A 43 243 2 HOH HOH . N 6 HOH A 44 244 190 HOH HOH . N 6 HOH A 45 245 287 HOH HOH . N 6 HOH A 46 246 145 HOH HOH . N 6 HOH A 47 247 203 HOH HOH . N 6 HOH A 48 248 288 HOH HOH . N 6 HOH A 49 249 41 HOH HOH . N 6 HOH A 50 250 274 HOH HOH . N 6 HOH A 51 251 99 HOH HOH . N 6 HOH A 52 252 300 HOH HOH . N 6 HOH A 53 253 152 HOH HOH . N 6 HOH A 54 254 109 HOH HOH . N 6 HOH A 55 255 301 HOH HOH . N 6 HOH A 56 256 267 HOH HOH . N 6 HOH A 57 257 297 HOH HOH . N 6 HOH A 58 258 18 HOH HOH . N 6 HOH A 59 259 299 HOH HOH . N 6 HOH A 60 260 165 HOH HOH . N 6 HOH A 61 261 20 HOH HOH . N 6 HOH A 62 262 164 HOH HOH . N 6 HOH A 63 263 58 HOH HOH . N 6 HOH A 64 264 42 HOH HOH . N 6 HOH A 65 265 21 HOH HOH . N 6 HOH A 66 266 115 HOH HOH . N 6 HOH A 67 267 47 HOH HOH . N 6 HOH A 68 268 179 HOH HOH . N 6 HOH A 69 269 143 HOH HOH . N 6 HOH A 70 270 222 HOH HOH . N 6 HOH A 71 271 14 HOH HOH . N 6 HOH A 72 272 16 HOH HOH . N 6 HOH A 73 273 211 HOH HOH . N 6 HOH A 74 274 281 HOH HOH . N 6 HOH A 75 275 19 HOH HOH . N 6 HOH A 76 276 9 HOH HOH . N 6 HOH A 77 277 77 HOH HOH . N 6 HOH A 78 278 218 HOH HOH . N 6 HOH A 79 279 31 HOH HOH . N 6 HOH A 80 280 318 HOH HOH . N 6 HOH A 81 281 22 HOH HOH . N 6 HOH A 82 282 113 HOH HOH . N 6 HOH A 83 283 73 HOH HOH . N 6 HOH A 84 284 327 HOH HOH . N 6 HOH A 85 285 64 HOH HOH . N 6 HOH A 86 286 83 HOH HOH . N 6 HOH A 87 287 210 HOH HOH . N 6 HOH A 88 288 108 HOH HOH . N 6 HOH A 89 289 185 HOH HOH . N 6 HOH A 90 290 75 HOH HOH . N 6 HOH A 91 291 63 HOH HOH . N 6 HOH A 92 292 219 HOH HOH . N 6 HOH A 93 293 283 HOH HOH . N 6 HOH A 94 294 156 HOH HOH . N 6 HOH A 95 295 205 HOH HOH . N 6 HOH A 96 296 57 HOH HOH . N 6 HOH A 97 297 35 HOH HOH . N 6 HOH A 98 298 125 HOH HOH . N 6 HOH A 99 299 313 HOH HOH . N 6 HOH A 100 300 332 HOH HOH . O 6 HOH B 1 201 333 HOH HOH . O 6 HOH B 2 202 184 HOH HOH . O 6 HOH B 3 203 258 HOH HOH . O 6 HOH B 4 204 123 HOH HOH . O 6 HOH B 5 205 272 HOH HOH . O 6 HOH B 6 206 247 HOH HOH . O 6 HOH B 7 207 249 HOH HOH . O 6 HOH B 8 208 89 HOH HOH . O 6 HOH B 9 209 331 HOH HOH . O 6 HOH B 10 210 329 HOH HOH . O 6 HOH B 11 211 69 HOH HOH . O 6 HOH B 12 212 215 HOH HOH . O 6 HOH B 13 213 54 HOH HOH . O 6 HOH B 14 214 98 HOH HOH . O 6 HOH B 15 215 172 HOH HOH . O 6 HOH B 16 216 119 HOH HOH . O 6 HOH B 17 217 117 HOH HOH . O 6 HOH B 18 218 137 HOH HOH . O 6 HOH B 19 219 242 HOH HOH . O 6 HOH B 20 220 101 HOH HOH . O 6 HOH B 21 221 157 HOH HOH . O 6 HOH B 22 222 169 HOH HOH . O 6 HOH B 23 223 153 HOH HOH . O 6 HOH B 24 224 6 HOH HOH . O 6 HOH B 25 225 261 HOH HOH . O 6 HOH B 26 226 150 HOH HOH . O 6 HOH B 27 227 224 HOH HOH . O 6 HOH B 28 228 59 HOH HOH . O 6 HOH B 29 229 17 HOH HOH . O 6 HOH B 30 230 223 HOH HOH . O 6 HOH B 31 231 10 HOH HOH . O 6 HOH B 32 232 24 HOH HOH . O 6 HOH B 33 233 279 HOH HOH . O 6 HOH B 34 234 68 HOH HOH . O 6 HOH B 35 235 5 HOH HOH . O 6 HOH B 36 236 315 HOH HOH . O 6 HOH B 37 237 96 HOH HOH . O 6 HOH B 38 238 25 HOH HOH . O 6 HOH B 39 239 168 HOH HOH . O 6 HOH B 40 240 320 HOH HOH . O 6 HOH B 41 241 61 HOH HOH . O 6 HOH B 42 242 175 HOH HOH . O 6 HOH B 43 243 280 HOH HOH . O 6 HOH B 44 244 36 HOH HOH . O 6 HOH B 45 245 214 HOH HOH . O 6 HOH B 46 246 197 HOH HOH . O 6 HOH B 47 247 79 HOH HOH . O 6 HOH B 48 248 74 HOH HOH . O 6 HOH B 49 249 44 HOH HOH . O 6 HOH B 50 250 120 HOH HOH . O 6 HOH B 51 251 13 HOH HOH . O 6 HOH B 52 252 76 HOH HOH . O 6 HOH B 53 253 303 HOH HOH . O 6 HOH B 54 254 72 HOH HOH . O 6 HOH B 55 255 217 HOH HOH . O 6 HOH B 56 256 46 HOH HOH . O 6 HOH B 57 257 104 HOH HOH . O 6 HOH B 58 258 316 HOH HOH . O 6 HOH B 59 259 177 HOH HOH . O 6 HOH B 60 260 170 HOH HOH . O 6 HOH B 61 261 201 HOH HOH . O 6 HOH B 62 262 160 HOH HOH . O 6 HOH B 63 263 163 HOH HOH . O 6 HOH B 64 264 291 HOH HOH . O 6 HOH B 65 265 182 HOH HOH . O 6 HOH B 66 266 70 HOH HOH . O 6 HOH B 67 267 322 HOH HOH . O 6 HOH B 68 268 314 HOH HOH . O 6 HOH B 69 269 107 HOH HOH . O 6 HOH B 70 270 92 HOH HOH . O 6 HOH B 71 271 312 HOH HOH . P 6 HOH C 1 201 323 HOH HOH . P 6 HOH C 2 202 321 HOH HOH . P 6 HOH C 3 203 226 HOH HOH . P 6 HOH C 4 204 161 HOH HOH . P 6 HOH C 5 205 317 HOH HOH . P 6 HOH C 6 206 254 HOH HOH . P 6 HOH C 7 207 49 HOH HOH . P 6 HOH C 8 208 173 HOH HOH . P 6 HOH C 9 209 151 HOH HOH . P 6 HOH C 10 210 126 HOH HOH . P 6 HOH C 11 211 269 HOH HOH . P 6 HOH C 12 212 209 HOH HOH . P 6 HOH C 13 213 142 HOH HOH . P 6 HOH C 14 214 284 HOH HOH . P 6 HOH C 15 215 15 HOH HOH . P 6 HOH C 16 216 118 HOH HOH . P 6 HOH C 17 217 90 HOH HOH . P 6 HOH C 18 218 134 HOH HOH . P 6 HOH C 19 219 56 HOH HOH . P 6 HOH C 20 220 189 HOH HOH . P 6 HOH C 21 221 45 HOH HOH . P 6 HOH C 22 222 149 HOH HOH . P 6 HOH C 23 223 302 HOH HOH . P 6 HOH C 24 224 53 HOH HOH . P 6 HOH C 25 225 4 HOH HOH . P 6 HOH C 26 226 271 HOH HOH . P 6 HOH C 27 227 102 HOH HOH . P 6 HOH C 28 228 325 HOH HOH . P 6 HOH C 29 229 132 HOH HOH . P 6 HOH C 30 230 298 HOH HOH . P 6 HOH C 31 231 40 HOH HOH . P 6 HOH C 32 232 48 HOH HOH . P 6 HOH C 33 233 122 HOH HOH . P 6 HOH C 34 234 82 HOH HOH . P 6 HOH C 35 235 43 HOH HOH . P 6 HOH C 36 236 148 HOH HOH . P 6 HOH C 37 237 130 HOH HOH . P 6 HOH C 38 238 309 HOH HOH . P 6 HOH C 39 239 67 HOH HOH . P 6 HOH C 40 240 62 HOH HOH . P 6 HOH C 41 241 275 HOH HOH . P 6 HOH C 42 242 328 HOH HOH . P 6 HOH C 43 243 294 HOH HOH . P 6 HOH C 44 244 135 HOH HOH . P 6 HOH C 45 245 326 HOH HOH . P 6 HOH C 46 246 295 HOH HOH . P 6 HOH C 47 247 65 HOH HOH . P 6 HOH C 48 248 198 HOH HOH . P 6 HOH C 49 249 146 HOH HOH . P 6 HOH C 50 250 131 HOH HOH . P 6 HOH C 51 251 241 HOH HOH . P 6 HOH C 52 252 171 HOH HOH . P 6 HOH C 53 253 330 HOH HOH . P 6 HOH C 54 254 305 HOH HOH . P 6 HOH C 55 255 270 HOH HOH . P 6 HOH C 56 256 324 HOH HOH . P 6 HOH C 57 257 103 HOH HOH . P 6 HOH C 58 258 246 HOH HOH . P 6 HOH C 59 259 319 HOH HOH . P 6 HOH C 60 260 206 HOH HOH . P 6 HOH C 61 261 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U0S . . . K 5 16.667 -14.427 -25.766 0.64 25.64 ? C10 U0S 103 B 1 HETATM 2 C C13 U0S . . . K 5 18.702 -17.262 -24.151 0.64 31.39 ? C13 U0S 103 B 1 HETATM 3 C C01 U0S . . . K 5 20.823 -20.186 -20.651 0.64 46.67 ? C01 U0S 103 B 1 HETATM 4 C C02 U0S . . . K 5 20.19 -19.143 -20.001 0.64 46.77 ? C02 U0S 103 B 1 HETATM 5 C C04 U0S . . . K 5 19.715 -18.151 -22.01 0.64 41.68 ? C04 U0S 103 B 1 HETATM 6 C C06 U0S . . . K 5 18.04 -16.296 -22.03 0.64 33.26 ? C06 U0S 103 B 1 HETATM 7 C C07 U0S . . . K 5 17.017 -15.966 -23.103 0.64 32.16 ? C07 U0S 103 B 1 HETATM 8 C C08 U0S . . . K 5 17.865 -15.994 -24.391 0.64 29.47 ? C08 U0S 103 B 1 HETATM 9 C C09 U0S . . . K 5 16.951 -15.913 -25.628 0.64 28.95 ? C09 U0S 103 B 1 HETATM 10 C C12 U0S . . . K 5 18.666 -14.757 -24.623 0.64 29.46 ? C12 U0S 103 B 1 HETATM 11 C C14 U0S . . . K 5 20.417 -19.193 -22.662 0.64 42.29 ? C14 U0S 103 B 1 HETATM 12 N N03 U0S . . . K 5 19.637 -18.114 -20.672 0.64 46.94 ? N03 U0S 103 B 1 HETATM 13 N N05 U0S . . . K 5 18.909 -17.265 -22.695 0.64 34.55 ? N05 U0S 103 B 1 HETATM 14 N N15 U0S . . . K 5 20.955 -20.21 -21.981 0.64 45.06 ? N15 U0S 103 B 1 HETATM 15 O O11 U0S . . . K 5 17.732 -13.775 -25.061 0.64 27.84 ? O11 U0S 103 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #