data_7HGA # _model_server_result.job_id H_f2EaRXp3TZfiEd06ukIw _model_server_result.datetime_utc '2024-11-06 16:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":103}' # _entry.id 7HGA # _exptl.entry_id 7HGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.272 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-methyl-6-(piperidin-1-yl)pyrimidin-2-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HGA _cell.length_a 41.66 _cell.length_b 41.949 _cell.length_c 158.053 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,M 1 1 B,H,I,J,N 2 1 C,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N3 O' _chem_comp.formula_weight 207.272 _chem_comp.id TU6 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-methyl-6-(piperidin-1-yl)pyrimidin-2-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TU6 sing 347 n n C2 C1 TU6 doub 348 n y C2 C3 TU6 sing 349 n y C1 N1 TU6 sing 350 n y C10 C9 TU6 sing 351 n n C10 N2 TU6 sing 352 n n C9 C8 TU6 sing 353 n n N1 C4 TU6 doub 354 n y C3 N2 TU6 sing 355 n n C3 N TU6 doub 356 n y N2 C6 TU6 sing 357 n n C4 N TU6 sing 358 n y C4 C5 TU6 sing 359 n n C8 C7 TU6 sing 360 n n C6 C7 TU6 sing 361 n n C5 O TU6 sing 362 n n C5 H1 TU6 sing 363 n n C5 H2 TU6 sing 364 n n C6 H3 TU6 sing 365 n n C6 H4 TU6 sing 366 n n C7 H5 TU6 sing 367 n n C7 H6 TU6 sing 368 n n C8 H7 TU6 sing 369 n n C8 H8 TU6 sing 370 n n C10 H9 TU6 sing 371 n n C10 H10 TU6 sing 372 n n C H11 TU6 sing 373 n n C H12 TU6 sing 374 n n C H13 TU6 sing 375 n n O H14 TU6 sing 376 n n C2 H15 TU6 sing 377 n n C9 H16 TU6 sing 378 n n C9 H17 TU6 sing 379 n n # _atom_sites.entry_id 7HGA _atom_sites.fract_transf_matrix[1][1] 0.024004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 101 95 SO4 SO4 . E 2 SO4 A 1 102 96 SO4 SO4 . F 3 EDO A 1 103 97 EDO EDO . G 2 SO4 A 1 104 4 SO4 SO4 . H 2 SO4 B 1 101 1 SO4 SO4 . I 2 SO4 B 1 102 3 SO4 SO4 . J 4 TU6 B 1 103 101 TU6 LIG . K 3 EDO C 1 101 101 EDO EDO . L 2 SO4 C 1 102 5 SO4 SO4 . M 5 HOH A 1 201 339 HOH HOH . M 5 HOH A 2 202 202 HOH HOH . M 5 HOH A 3 203 304 HOH HOH . M 5 HOH A 4 204 278 HOH HOH . M 5 HOH A 5 205 343 HOH HOH . M 5 HOH A 6 206 259 HOH HOH . M 5 HOH A 7 207 292 HOH HOH . M 5 HOH A 8 208 85 HOH HOH . M 5 HOH A 9 209 139 HOH HOH . M 5 HOH A 10 210 293 HOH HOH . M 5 HOH A 11 211 301 HOH HOH . M 5 HOH A 12 212 55 HOH HOH . M 5 HOH A 13 213 185 HOH HOH . M 5 HOH A 14 214 208 HOH HOH . M 5 HOH A 15 215 66 HOH HOH . M 5 HOH A 16 216 86 HOH HOH . M 5 HOH A 17 217 34 HOH HOH . M 5 HOH A 18 218 93 HOH HOH . M 5 HOH A 19 219 28 HOH HOH . M 5 HOH A 20 220 167 HOH HOH . M 5 HOH A 21 221 26 HOH HOH . M 5 HOH A 22 222 91 HOH HOH . M 5 HOH A 23 223 8 HOH HOH . M 5 HOH A 24 224 94 HOH HOH . M 5 HOH A 25 225 115 HOH HOH . M 5 HOH A 26 226 95 HOH HOH . M 5 HOH A 27 227 71 HOH HOH . M 5 HOH A 28 228 97 HOH HOH . M 5 HOH A 29 229 260 HOH HOH . M 5 HOH A 30 230 2 HOH HOH . M 5 HOH A 31 231 289 HOH HOH . M 5 HOH A 32 232 290 HOH HOH . M 5 HOH A 33 233 23 HOH HOH . M 5 HOH A 34 234 18 HOH HOH . M 5 HOH A 35 235 337 HOH HOH . M 5 HOH A 36 236 7 HOH HOH . M 5 HOH A 37 237 1 HOH HOH . M 5 HOH A 38 238 111 HOH HOH . M 5 HOH A 39 239 199 HOH HOH . M 5 HOH A 40 240 27 HOH HOH . M 5 HOH A 41 241 42 HOH HOH . M 5 HOH A 42 242 12 HOH HOH . M 5 HOH A 43 243 179 HOH HOH . M 5 HOH A 44 244 203 HOH HOH . M 5 HOH A 45 245 345 HOH HOH . M 5 HOH A 46 246 41 HOH HOH . M 5 HOH A 47 247 267 HOH HOH . M 5 HOH A 48 248 37 HOH HOH . M 5 HOH A 49 249 32 HOH HOH . M 5 HOH A 50 250 274 HOH HOH . M 5 HOH A 51 251 188 HOH HOH . M 5 HOH A 52 252 84 HOH HOH . M 5 HOH A 53 253 288 HOH HOH . M 5 HOH A 54 254 60 HOH HOH . M 5 HOH A 55 255 318 HOH HOH . M 5 HOH A 56 256 87 HOH HOH . M 5 HOH A 57 257 38 HOH HOH . M 5 HOH A 58 258 58 HOH HOH . M 5 HOH A 59 259 145 HOH HOH . M 5 HOH A 60 260 152 HOH HOH . M 5 HOH A 61 261 190 HOH HOH . M 5 HOH A 62 262 77 HOH HOH . M 5 HOH A 63 263 47 HOH HOH . M 5 HOH A 64 264 20 HOH HOH . M 5 HOH A 65 265 218 HOH HOH . M 5 HOH A 66 266 300 HOH HOH . M 5 HOH A 67 267 21 HOH HOH . M 5 HOH A 68 268 109 HOH HOH . M 5 HOH A 69 269 78 HOH HOH . M 5 HOH A 70 270 297 HOH HOH . M 5 HOH A 71 271 116 HOH HOH . M 5 HOH A 72 272 14 HOH HOH . M 5 HOH A 73 273 165 HOH HOH . M 5 HOH A 74 274 222 HOH HOH . M 5 HOH A 75 275 131 HOH HOH . M 5 HOH A 76 276 16 HOH HOH . M 5 HOH A 77 277 9 HOH HOH . M 5 HOH A 78 278 143 HOH HOH . M 5 HOH A 79 279 73 HOH HOH . M 5 HOH A 80 280 164 HOH HOH . M 5 HOH A 81 281 327 HOH HOH . M 5 HOH A 82 282 19 HOH HOH . M 5 HOH A 83 283 22 HOH HOH . M 5 HOH A 84 284 281 HOH HOH . M 5 HOH A 85 285 113 HOH HOH . M 5 HOH A 86 286 99 HOH HOH . M 5 HOH A 87 287 307 HOH HOH . M 5 HOH A 88 288 31 HOH HOH . M 5 HOH A 89 289 64 HOH HOH . M 5 HOH A 90 290 210 HOH HOH . M 5 HOH A 91 291 324 HOH HOH . M 5 HOH A 92 292 63 HOH HOH . M 5 HOH A 93 293 83 HOH HOH . M 5 HOH A 94 294 75 HOH HOH . M 5 HOH A 95 295 211 HOH HOH . M 5 HOH A 96 296 108 HOH HOH . M 5 HOH A 97 297 219 HOH HOH . M 5 HOH A 98 298 57 HOH HOH . M 5 HOH A 99 299 156 HOH HOH . M 5 HOH A 100 300 358 HOH HOH . M 5 HOH A 101 301 332 HOH HOH . M 5 HOH A 102 302 283 HOH HOH . M 5 HOH A 103 303 205 HOH HOH . M 5 HOH A 104 304 35 HOH HOH . M 5 HOH A 105 305 206 HOH HOH . M 5 HOH A 106 306 125 HOH HOH . N 5 HOH B 1 201 352 HOH HOH . N 5 HOH B 2 202 355 HOH HOH . N 5 HOH B 3 203 354 HOH HOH . N 5 HOH B 4 204 247 HOH HOH . N 5 HOH B 5 205 168 HOH HOH . N 5 HOH B 6 206 69 HOH HOH . N 5 HOH B 7 207 356 HOH HOH . N 5 HOH B 8 208 331 HOH HOH . N 5 HOH B 9 209 258 HOH HOH . N 5 HOH B 10 210 89 HOH HOH . N 5 HOH B 11 211 123 HOH HOH . N 5 HOH B 12 212 344 HOH HOH . N 5 HOH B 13 213 347 HOH HOH . N 5 HOH B 14 214 98 HOH HOH . N 5 HOH B 15 215 54 HOH HOH . N 5 HOH B 16 216 272 HOH HOH . N 5 HOH B 17 217 153 HOH HOH . N 5 HOH B 18 218 201 HOH HOH . N 5 HOH B 19 219 261 HOH HOH . N 5 HOH B 20 220 17 HOH HOH . N 5 HOH B 21 221 340 HOH HOH . N 5 HOH B 22 222 334 HOH HOH . N 5 HOH B 23 223 117 HOH HOH . N 5 HOH B 24 224 249 HOH HOH . N 5 HOH B 25 225 5 HOH HOH . N 5 HOH B 26 226 68 HOH HOH . N 5 HOH B 27 227 169 HOH HOH . N 5 HOH B 28 228 96 HOH HOH . N 5 HOH B 29 229 137 HOH HOH . N 5 HOH B 30 230 242 HOH HOH . N 5 HOH B 31 231 223 HOH HOH . N 5 HOH B 32 232 24 HOH HOH . N 5 HOH B 33 233 74 HOH HOH . N 5 HOH B 34 234 6 HOH HOH . N 5 HOH B 35 235 150 HOH HOH . N 5 HOH B 36 236 10 HOH HOH . N 5 HOH B 37 237 101 HOH HOH . N 5 HOH B 38 238 172 HOH HOH . N 5 HOH B 39 239 215 HOH HOH . N 5 HOH B 40 240 359 HOH HOH . N 5 HOH B 41 241 319 HOH HOH . N 5 HOH B 42 242 320 HOH HOH . N 5 HOH B 43 243 120 HOH HOH . N 5 HOH B 44 244 303 HOH HOH . N 5 HOH B 45 245 329 HOH HOH . N 5 HOH B 46 246 61 HOH HOH . N 5 HOH B 47 247 25 HOH HOH . N 5 HOH B 48 248 197 HOH HOH . N 5 HOH B 49 249 214 HOH HOH . N 5 HOH B 50 250 13 HOH HOH . N 5 HOH B 51 251 315 HOH HOH . N 5 HOH B 52 252 76 HOH HOH . N 5 HOH B 53 253 217 HOH HOH . N 5 HOH B 54 254 72 HOH HOH . N 5 HOH B 55 255 59 HOH HOH . N 5 HOH B 56 256 280 HOH HOH . N 5 HOH B 57 257 36 HOH HOH . N 5 HOH B 58 258 184 HOH HOH . N 5 HOH B 59 259 279 HOH HOH . N 5 HOH B 60 260 182 HOH HOH . N 5 HOH B 61 261 175 HOH HOH . N 5 HOH B 62 262 44 HOH HOH . N 5 HOH B 63 263 46 HOH HOH . N 5 HOH B 64 264 350 HOH HOH . N 5 HOH B 65 265 104 HOH HOH . N 5 HOH B 66 266 170 HOH HOH . N 5 HOH B 67 267 335 HOH HOH . N 5 HOH B 68 268 349 HOH HOH . N 5 HOH B 69 269 157 HOH HOH . N 5 HOH B 70 270 291 HOH HOH . N 5 HOH B 71 271 119 HOH HOH . N 5 HOH B 72 272 177 HOH HOH . N 5 HOH B 73 273 338 HOH HOH . N 5 HOH B 74 274 163 HOH HOH . N 5 HOH B 75 275 160 HOH HOH . N 5 HOH B 76 276 309 HOH HOH . N 5 HOH B 77 277 322 HOH HOH . N 5 HOH B 78 278 333 HOH HOH . N 5 HOH B 79 279 313 HOH HOH . N 5 HOH B 80 280 348 HOH HOH . N 5 HOH B 81 281 314 HOH HOH . N 5 HOH B 82 282 92 HOH HOH . N 5 HOH B 83 283 312 HOH HOH . N 5 HOH B 84 284 107 HOH HOH . N 5 HOH B 85 285 310 HOH HOH . N 5 HOH B 86 286 316 HOH HOH . O 5 HOH C 1 201 346 HOH HOH . O 5 HOH C 2 202 321 HOH HOH . O 5 HOH C 3 203 254 HOH HOH . O 5 HOH C 4 204 161 HOH HOH . O 5 HOH C 5 205 151 HOH HOH . O 5 HOH C 6 206 118 HOH HOH . O 5 HOH C 7 207 323 HOH HOH . O 5 HOH C 8 208 149 HOH HOH . O 5 HOH C 9 209 173 HOH HOH . O 5 HOH C 10 210 269 HOH HOH . O 5 HOH C 11 211 271 HOH HOH . O 5 HOH C 12 212 341 HOH HOH . O 5 HOH C 13 213 294 HOH HOH . O 5 HOH C 14 214 134 HOH HOH . O 5 HOH C 15 215 142 HOH HOH . O 5 HOH C 16 216 90 HOH HOH . O 5 HOH C 17 217 325 HOH HOH . O 5 HOH C 18 218 226 HOH HOH . O 5 HOH C 19 219 102 HOH HOH . O 5 HOH C 20 220 298 HOH HOH . O 5 HOH C 21 221 317 HOH HOH . O 5 HOH C 22 222 171 HOH HOH . O 5 HOH C 23 223 296 HOH HOH . O 5 HOH C 24 224 326 HOH HOH . O 5 HOH C 25 225 284 HOH HOH . O 5 HOH C 26 226 189 HOH HOH . O 5 HOH C 27 227 45 HOH HOH . O 5 HOH C 28 228 302 HOH HOH . O 5 HOH C 29 229 4 HOH HOH . O 5 HOH C 30 230 15 HOH HOH . O 5 HOH C 31 231 122 HOH HOH . O 5 HOH C 32 232 146 HOH HOH . O 5 HOH C 33 233 49 HOH HOH . O 5 HOH C 34 234 62 HOH HOH . O 5 HOH C 35 235 82 HOH HOH . O 5 HOH C 36 236 126 HOH HOH . O 5 HOH C 37 237 43 HOH HOH . O 5 HOH C 38 238 40 HOH HOH . O 5 HOH C 39 239 67 HOH HOH . O 5 HOH C 40 240 198 HOH HOH . O 5 HOH C 41 241 287 HOH HOH . O 5 HOH C 42 242 148 HOH HOH . O 5 HOH C 43 243 132 HOH HOH . O 5 HOH C 44 244 275 HOH HOH . O 5 HOH C 45 245 299 HOH HOH . O 5 HOH C 46 246 48 HOH HOH . O 5 HOH C 47 247 56 HOH HOH . O 5 HOH C 48 248 328 HOH HOH . O 5 HOH C 49 249 336 HOH HOH . O 5 HOH C 50 250 357 HOH HOH . O 5 HOH C 51 251 246 HOH HOH . O 5 HOH C 52 252 53 HOH HOH . O 5 HOH C 53 253 130 HOH HOH . O 5 HOH C 54 254 65 HOH HOH . O 5 HOH C 55 255 330 HOH HOH . O 5 HOH C 56 256 305 HOH HOH . O 5 HOH C 57 257 135 HOH HOH . O 5 HOH C 58 258 241 HOH HOH . O 5 HOH C 59 259 342 HOH HOH . O 5 HOH C 60 260 270 HOH HOH . O 5 HOH C 61 261 103 HOH HOH . O 5 HOH C 62 262 209 HOH HOH . O 5 HOH C 63 263 70 HOH HOH . O 5 HOH C 64 264 351 HOH HOH . O 5 HOH C 65 265 353 HOH HOH . O 5 HOH C 66 266 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TU6 . . . J 4 19.11 -16.693 -19.734 0.82 30.5 ? N1 TU6 103 B 1 HETATM 2 C C4 TU6 . . . J 4 18.161 -15.799 -20.037 0.82 32.79 ? C4 TU6 103 B 1 HETATM 3 C C5 TU6 . . . J 4 17.539 -14.935 -18.932 0.82 33.86 ? C5 TU6 103 B 1 HETATM 4 C C6 TU6 . . . J 4 18.701 -16.103 -24.75 0.82 27.75 ? C6 TU6 103 B 1 HETATM 5 C C7 TU6 . . . J 4 17.69 -16.907 -25.552 0.82 28.32 ? C7 TU6 103 B 1 HETATM 6 C C8 TU6 . . . J 4 16.401 -16.131 -25.801 0.82 29.8 ? C8 TU6 103 B 1 HETATM 7 C C10 TU6 . . . J 4 16.919 -14.739 -23.778 0.82 28.17 ? C10 TU6 103 B 1 HETATM 8 N N TU6 . . . J 4 17.746 -15.468 -21.266 0.82 30.13 ? N TU6 103 B 1 HETATM 9 C C TU6 . . . J 4 20.76 -18.328 -20.419 0.82 40.06 ? C TU6 103 B 1 HETATM 10 O O TU6 . . . J 4 17.719 -15.543 -17.67 0.82 38.79 ? O TU6 103 B 1 HETATM 11 C C1 TU6 . . . J 4 19.705 -17.317 -20.762 0.82 33.52 ? C1 TU6 103 B 1 HETATM 12 C C2 TU6 . . . J 4 19.362 -17.033 -22.069 0.82 29.96 ? C2 TU6 103 B 1 HETATM 13 C C3 TU6 . . . J 4 18.38 -16.065 -22.277 0.82 28.34 ? C3 TU6 103 B 1 HETATM 14 C C9 TU6 . . . J 4 15.841 -15.53 -24.509 0.82 27.46 ? C9 TU6 103 B 1 HETATM 15 N N2 TU6 . . . J 4 18.078 -15.6 -23.526 0.82 27.97 ? N2 TU6 103 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #