data_7HH8 # _model_server_result.job_id daoUffS0HofB2yrFmIzlvw _model_server_result.datetime_utc '2025-02-16 12:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7hh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":104}' # _entry.id 7HH8 # _exptl.entry_id 7HH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.268 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-piperidin-3-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7HH8 _cell.length_a 41.61 _cell.length_b 42.34 _cell.length_c 159.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,N 1 1 B,I,J,K,O 2 1 C,L,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N2 O' _chem_comp.formula_weight 204.268 _chem_comp.id KF8 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-piperidin-3-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 KF8 sing 182 n n C05 C04 KF8 sing 183 n n C15 C14 KF8 doub 184 n y C15 C10 KF8 sing 185 n y C06 C07 KF8 sing 186 n n O01 C02 KF8 doub 187 n n C14 C13 KF8 sing 188 n y C02 N03 KF8 sing 189 n n C02 C10 KF8 sing 190 n n C07 N08 KF8 sing 191 n n N03 C04 KF8 sing 192 n n C10 C11 KF8 doub 193 n y C04 C09 KF8 sing 194 n n C09 N08 KF8 sing 195 n n C13 C12 KF8 doub 196 n y C11 C12 KF8 sing 197 n y C13 H1 KF8 sing 198 n n C15 H2 KF8 sing 199 n n N03 H3 KF8 sing 200 n n C04 H4 KF8 sing 201 n n C05 H5 KF8 sing 202 n n C05 H6 KF8 sing 203 n n C06 H7 KF8 sing 204 n n C06 H8 KF8 sing 205 n n C07 H9 KF8 sing 206 n n C07 H10 KF8 sing 207 n n N08 H11 KF8 sing 208 n n C09 H13 KF8 sing 209 n n C09 H14 KF8 sing 210 n n C11 H15 KF8 sing 211 n n C12 H16 KF8 sing 212 n n C14 H17 KF8 sing 213 n n # _atom_sites.entry_id 7HH8 _atom_sites.fract_transf_matrix[1][1] 0.024033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 101 95 SO4 SO4 . E 2 SO4 A 1 102 96 SO4 SO4 . F 3 EDO A 1 103 97 EDO EDO . G 4 KF8 A 1 104 101 KF8 LIG . H 2 SO4 A 1 105 4 SO4 SO4 . I 3 EDO B 1 101 101 EDO EDO . J 2 SO4 B 1 102 1 SO4 SO4 . K 2 SO4 B 1 103 3 SO4 SO4 . L 3 EDO C 1 101 101 EDO EDO . M 2 SO4 C 1 102 5 SO4 SO4 . N 5 HOH A 1 201 307 HOH HOH . N 5 HOH A 2 202 304 HOH HOH . N 5 HOH A 3 203 202 HOH HOH . N 5 HOH A 4 204 84 HOH HOH . N 5 HOH A 5 205 139 HOH HOH . N 5 HOH A 6 206 37 HOH HOH . N 5 HOH A 7 207 55 HOH HOH . N 5 HOH A 8 208 97 HOH HOH . N 5 HOH A 9 209 87 HOH HOH . N 5 HOH A 10 210 91 HOH HOH . N 5 HOH A 11 211 94 HOH HOH . N 5 HOH A 12 212 289 HOH HOH . N 5 HOH A 13 213 188 HOH HOH . N 5 HOH A 14 214 95 HOH HOH . N 5 HOH A 15 215 26 HOH HOH . N 5 HOH A 16 216 32 HOH HOH . N 5 HOH A 17 217 208 HOH HOH . N 5 HOH A 18 218 111 HOH HOH . N 5 HOH A 19 219 41 HOH HOH . N 5 HOH A 20 220 7 HOH HOH . N 5 HOH A 21 221 23 HOH HOH . N 5 HOH A 22 222 260 HOH HOH . N 5 HOH A 23 223 66 HOH HOH . N 5 HOH A 24 224 274 HOH HOH . N 5 HOH A 25 225 12 HOH HOH . N 5 HOH A 26 226 143 HOH HOH . N 5 HOH A 27 227 8 HOH HOH . N 5 HOH A 28 228 38 HOH HOH . N 5 HOH A 29 229 86 HOH HOH . N 5 HOH A 30 230 296 HOH HOH . N 5 HOH A 31 231 85 HOH HOH . N 5 HOH A 32 232 78 HOH HOH . N 5 HOH A 33 233 28 HOH HOH . N 5 HOH A 34 234 203 HOH HOH . N 5 HOH A 35 235 2 HOH HOH . N 5 HOH A 36 236 71 HOH HOH . N 5 HOH A 37 237 34 HOH HOH . N 5 HOH A 38 238 199 HOH HOH . N 5 HOH A 39 239 293 HOH HOH . N 5 HOH A 40 240 301 HOH HOH . N 5 HOH A 41 241 1 HOH HOH . N 5 HOH A 42 242 99 HOH HOH . N 5 HOH A 43 243 267 HOH HOH . N 5 HOH A 44 244 167 HOH HOH . N 5 HOH A 45 245 60 HOH HOH . N 5 HOH A 46 246 145 HOH HOH . N 5 HOH A 47 247 299 HOH HOH . N 5 HOH A 48 248 31 HOH HOH . N 5 HOH A 49 249 18 HOH HOH . N 5 HOH A 50 250 297 HOH HOH . N 5 HOH A 51 251 58 HOH HOH . N 5 HOH A 52 252 116 HOH HOH . N 5 HOH A 53 253 21 HOH HOH . N 5 HOH A 54 254 47 HOH HOH . N 5 HOH A 55 255 27 HOH HOH . N 5 HOH A 56 256 179 HOH HOH . N 5 HOH A 57 257 22 HOH HOH . N 5 HOH A 58 258 20 HOH HOH . N 5 HOH A 59 259 93 HOH HOH . N 5 HOH A 60 260 222 HOH HOH . N 5 HOH A 61 261 292 HOH HOH . N 5 HOH A 62 262 300 HOH HOH . N 5 HOH A 63 263 14 HOH HOH . N 5 HOH A 64 264 152 HOH HOH . N 5 HOH A 65 265 42 HOH HOH . N 5 HOH A 66 266 288 HOH HOH . N 5 HOH A 67 267 164 HOH HOH . N 5 HOH A 68 268 287 HOH HOH . N 5 HOH A 69 269 190 HOH HOH . N 5 HOH A 70 270 19 HOH HOH . N 5 HOH A 71 271 115 HOH HOH . N 5 HOH A 72 272 218 HOH HOH . N 5 HOH A 73 273 109 HOH HOH . N 5 HOH A 74 274 77 HOH HOH . N 5 HOH A 75 275 318 HOH HOH . N 5 HOH A 76 276 64 HOH HOH . N 5 HOH A 77 277 131 HOH HOH . N 5 HOH A 78 278 9 HOH HOH . N 5 HOH A 79 279 73 HOH HOH . N 5 HOH A 80 280 211 HOH HOH . N 5 HOH A 81 281 16 HOH HOH . N 5 HOH A 82 282 281 HOH HOH . N 5 HOH A 83 283 165 HOH HOH . N 5 HOH A 84 284 113 HOH HOH . N 5 HOH A 85 285 63 HOH HOH . N 5 HOH A 86 286 327 HOH HOH . N 5 HOH A 87 287 270 HOH HOH . N 5 HOH A 88 288 210 HOH HOH . N 5 HOH A 89 289 83 HOH HOH . N 5 HOH A 90 290 259 HOH HOH . N 5 HOH A 91 291 219 HOH HOH . N 5 HOH A 92 292 185 HOH HOH . N 5 HOH A 93 293 57 HOH HOH . N 5 HOH A 94 294 205 HOH HOH . N 5 HOH A 95 295 35 HOH HOH . N 5 HOH A 96 296 283 HOH HOH . N 5 HOH A 97 297 125 HOH HOH . N 5 HOH A 98 298 75 HOH HOH . N 5 HOH A 99 299 156 HOH HOH . N 5 HOH A 100 300 332 HOH HOH . O 5 HOH B 1 201 272 HOH HOH . O 5 HOH B 2 202 89 HOH HOH . O 5 HOH B 3 203 331 HOH HOH . O 5 HOH B 4 204 258 HOH HOH . O 5 HOH B 5 205 247 HOH HOH . O 5 HOH B 6 206 123 HOH HOH . O 5 HOH B 7 207 224 HOH HOH . O 5 HOH B 8 208 69 HOH HOH . O 5 HOH B 9 209 98 HOH HOH . O 5 HOH B 10 210 117 HOH HOH . O 5 HOH B 11 211 242 HOH HOH . O 5 HOH B 12 212 172 HOH HOH . O 5 HOH B 13 213 137 HOH HOH . O 5 HOH B 14 214 153 HOH HOH . O 5 HOH B 15 215 24 HOH HOH . O 5 HOH B 16 216 10 HOH HOH . O 5 HOH B 17 217 101 HOH HOH . O 5 HOH B 18 218 280 HOH HOH . O 5 HOH B 19 219 6 HOH HOH . O 5 HOH B 20 220 169 HOH HOH . O 5 HOH B 21 221 17 HOH HOH . O 5 HOH B 22 222 150 HOH HOH . O 5 HOH B 23 223 184 HOH HOH . O 5 HOH B 24 224 320 HOH HOH . O 5 HOH B 25 225 76 HOH HOH . O 5 HOH B 26 226 68 HOH HOH . O 5 HOH B 27 227 119 HOH HOH . O 5 HOH B 28 228 315 HOH HOH . O 5 HOH B 29 229 54 HOH HOH . O 5 HOH B 30 230 5 HOH HOH . O 5 HOH B 31 231 25 HOH HOH . O 5 HOH B 32 232 223 HOH HOH . O 5 HOH B 33 233 170 HOH HOH . O 5 HOH B 34 234 261 HOH HOH . O 5 HOH B 35 235 175 HOH HOH . O 5 HOH B 36 236 177 HOH HOH . O 5 HOH B 37 237 329 HOH HOH . O 5 HOH B 38 238 249 HOH HOH . O 5 HOH B 39 239 215 HOH HOH . O 5 HOH B 40 240 120 HOH HOH . O 5 HOH B 41 241 61 HOH HOH . O 5 HOH B 42 242 72 HOH HOH . O 5 HOH B 43 243 96 HOH HOH . O 5 HOH B 44 244 214 HOH HOH . O 5 HOH B 45 245 59 HOH HOH . O 5 HOH B 46 246 157 HOH HOH . O 5 HOH B 47 247 36 HOH HOH . O 5 HOH B 48 248 279 HOH HOH . O 5 HOH B 49 249 46 HOH HOH . O 5 HOH B 50 250 182 HOH HOH . O 5 HOH B 51 251 197 HOH HOH . O 5 HOH B 52 252 13 HOH HOH . O 5 HOH B 53 253 79 HOH HOH . O 5 HOH B 54 254 217 HOH HOH . O 5 HOH B 55 255 168 HOH HOH . O 5 HOH B 56 256 303 HOH HOH . O 5 HOH B 57 257 74 HOH HOH . O 5 HOH B 58 258 44 HOH HOH . O 5 HOH B 59 259 104 HOH HOH . O 5 HOH B 60 260 291 HOH HOH . O 5 HOH B 61 261 322 HOH HOH . O 5 HOH B 62 262 160 HOH HOH . O 5 HOH B 63 263 163 HOH HOH . O 5 HOH B 64 264 316 HOH HOH . O 5 HOH B 65 265 201 HOH HOH . O 5 HOH B 66 266 314 HOH HOH . O 5 HOH B 67 267 107 HOH HOH . O 5 HOH B 68 268 312 HOH HOH . P 5 HOH C 1 201 290 HOH HOH . P 5 HOH C 2 202 321 HOH HOH . P 5 HOH C 3 203 323 HOH HOH . P 5 HOH C 4 204 254 HOH HOH . P 5 HOH C 5 205 271 HOH HOH . P 5 HOH C 6 206 209 HOH HOH . P 5 HOH C 7 207 90 HOH HOH . P 5 HOH C 8 208 132 HOH HOH . P 5 HOH C 9 209 189 HOH HOH . P 5 HOH C 10 210 148 HOH HOH . P 5 HOH C 11 211 118 HOH HOH . P 5 HOH C 12 212 49 HOH HOH . P 5 HOH C 13 213 269 HOH HOH . P 5 HOH C 14 214 142 HOH HOH . P 5 HOH C 15 215 173 HOH HOH . P 5 HOH C 16 216 317 HOH HOH . P 5 HOH C 17 217 134 HOH HOH . P 5 HOH C 18 218 302 HOH HOH . P 5 HOH C 19 219 198 HOH HOH . P 5 HOH C 20 220 126 HOH HOH . P 5 HOH C 21 221 325 HOH HOH . P 5 HOH C 22 222 43 HOH HOH . P 5 HOH C 23 223 82 HOH HOH . P 5 HOH C 24 224 15 HOH HOH . P 5 HOH C 25 225 298 HOH HOH . P 5 HOH C 26 226 102 HOH HOH . P 5 HOH C 27 227 309 HOH HOH . P 5 HOH C 28 228 45 HOH HOH . P 5 HOH C 29 229 67 HOH HOH . P 5 HOH C 30 230 161 HOH HOH . P 5 HOH C 31 231 295 HOH HOH . P 5 HOH C 32 232 275 HOH HOH . P 5 HOH C 33 233 4 HOH HOH . P 5 HOH C 34 234 122 HOH HOH . P 5 HOH C 35 235 40 HOH HOH . P 5 HOH C 36 236 53 HOH HOH . P 5 HOH C 37 237 284 HOH HOH . P 5 HOH C 38 238 326 HOH HOH . P 5 HOH C 39 239 48 HOH HOH . P 5 HOH C 40 240 171 HOH HOH . P 5 HOH C 41 241 62 HOH HOH . P 5 HOH C 42 242 56 HOH HOH . P 5 HOH C 43 243 226 HOH HOH . P 5 HOH C 44 244 294 HOH HOH . P 5 HOH C 45 245 151 HOH HOH . P 5 HOH C 46 246 305 HOH HOH . P 5 HOH C 47 247 65 HOH HOH . P 5 HOH C 48 248 130 HOH HOH . P 5 HOH C 49 249 135 HOH HOH . P 5 HOH C 50 250 328 HOH HOH . P 5 HOH C 51 251 149 HOH HOH . P 5 HOH C 52 252 146 HOH HOH . P 5 HOH C 53 253 241 HOH HOH . P 5 HOH C 54 254 330 HOH HOH . P 5 HOH C 55 255 108 HOH HOH . P 5 HOH C 56 256 324 HOH HOH . P 5 HOH C 57 257 70 HOH HOH . P 5 HOH C 58 258 246 HOH HOH . P 5 HOH C 59 259 103 HOH HOH . P 5 HOH C 60 260 319 HOH HOH . P 5 HOH C 61 261 92 HOH HOH . P 5 HOH C 62 262 313 HOH HOH . P 5 HOH C 63 263 310 HOH HOH . P 5 HOH C 64 264 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KF8 . . . G 4 2.23 -26.239 -7.845 0.64 57.94 ? C10 KF8 104 A 1 HETATM 2 C C13 KF8 . . . G 4 3.806 -26.736 -10.095 0.64 47.88 ? C13 KF8 104 A 1 HETATM 3 C C15 KF8 . . . G 4 2.711 -27.522 -8.113 0.64 59.74 ? C15 KF8 104 A 1 HETATM 4 O O01 KF8 . . . G 4 0.169 -26.402 -6.683 0.64 62.27 ? O01 KF8 104 A 1 HETATM 5 C C02 KF8 . . . G 4 1.338 -26.025 -6.663 0.64 60.76 ? C02 KF8 104 A 1 HETATM 6 N N03 KF8 . . . G 4 1.873 -25.429 -5.587 0.64 53.23 ? N03 KF8 104 A 1 HETATM 7 C C04 KF8 . . . G 4 1.314 -25.606 -4.243 0.64 50.78 ? C04 KF8 104 A 1 HETATM 8 C C05 KF8 . . . G 4 1.885 -26.862 -3.594 0.64 49.19 ? C05 KF8 104 A 1 HETATM 9 C C06 KF8 . . . G 4 2.241 -26.623 -2.126 0.64 50.5 ? C06 KF8 104 A 1 HETATM 10 C C07 KF8 . . . G 4 3.231 -25.481 -1.992 0.64 39.15 ? C07 KF8 104 A 1 HETATM 11 N N08 KF8 . . . G 4 3.043 -24.477 -3 0.64 46.5 ? N08 KF8 104 A 1 HETATM 12 C C09 KF8 . . . G 4 1.634 -24.383 -3.403 0.64 51.46 ? C09 KF8 104 A 1 HETATM 13 C C11 KF8 . . . G 4 2.548 -25.208 -8.725 0.64 54.25 ? C11 KF8 104 A 1 HETATM 14 C C12 KF8 . . . G 4 3.319 -25.46 -9.852 0.64 41.57 ? C12 KF8 104 A 1 HETATM 15 C C14 KF8 . . . G 4 3.502 -27.761 -9.229 0.64 49.72 ? C14 KF8 104 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #